Wall clock time and date at job start Tue Mar 31 2020 12:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99580 * 2 1 4 4 H 1.48498 * 109.46831 * 269.99840 * 3 2 1 5 5 H 1.48502 * 109.46896 * 29.99585 * 3 2 1 6 6 H 1.48498 * 109.47308 * 149.99550 * 3 2 1 7 7 C 1.37872 * 120.00645 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99885 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47144 * 185.11685 * 9 7 2 11 11 C 1.46899 * 110.99978 * 62.67923 * 10 9 7 12 12 C 1.52999 * 109.46880 * 66.04790 * 11 10 9 13 13 C 1.53006 * 109.46897 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47165 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47181 * 64.99876 * 14 13 12 16 16 C 1.52995 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47172 * 300.00110 * 16 15 14 18 18 C 1.52996 * 109.47340 * 60.00250 * 17 16 15 19 19 C 1.53001 * 109.47172 * 184.99986 * 14 13 12 20 20 C 1.46901 * 110.99951 * 298.72599 * 10 9 7 21 21 C 1.50704 * 109.47180 * 287.87728 * 20 10 9 22 22 C 1.38675 * 120.41685 * 275.52108 * 21 20 10 23 23 C 1.38622 * 118.41505 * 179.78026 * 22 21 20 24 24 C 1.38225 * 119.16495 * 0.51838 * 23 22 21 25 25 N 1.31850 * 120.76393 * 359.71923 * 24 23 22 26 26 C 1.31887 * 121.72702 * 0.02562 * 25 24 23 27 27 H 0.96993 * 120.00605 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46926 * 65.11399 * 9 7 2 29 29 H 1.09005 * 109.46919 * 305.11759 * 9 7 2 30 30 H 1.08997 * 109.47171 * 306.04841 * 11 10 9 31 31 H 1.08998 * 109.46936 * 186.04792 * 11 10 9 32 32 H 1.08997 * 109.47177 * 60.00055 * 12 11 10 33 33 H 1.08998 * 109.47106 * 299.99255 * 12 11 10 34 34 H 1.08997 * 109.47115 * 60.00075 * 13 12 11 35 35 H 1.08998 * 109.46974 * 300.00036 * 13 12 11 36 36 H 1.09002 * 109.47348 * 305.00185 * 14 13 12 37 37 H 1.08996 * 109.47172 * 300.00067 * 15 14 13 38 38 H 1.09002 * 109.46727 * 59.99929 * 15 14 13 39 39 H 1.09007 * 109.47107 * 180.02562 * 16 15 14 40 40 H 1.09002 * 109.47348 * 60.00310 * 16 15 14 41 41 H 1.09001 * 109.46844 * 299.99871 * 17 16 15 42 42 H 1.09001 * 109.47356 * 180.02562 * 17 16 15 43 43 H 1.08996 * 109.47354 * 180.02562 * 18 17 16 44 44 H 1.09000 * 109.46984 * 59.99396 * 18 17 16 45 45 H 1.09001 * 109.46844 * 299.99871 * 19 14 13 46 46 H 1.08993 * 109.47319 * 60.00331 * 19 14 13 47 47 H 1.09002 * 109.47380 * 47.87909 * 20 10 9 48 48 H 1.09002 * 109.47013 * 167.87516 * 20 10 9 49 49 H 1.07995 * 120.78871 * 0.02562 * 22 21 20 50 50 H 1.08005 * 120.41821 * 180.21830 * 23 22 21 51 51 H 1.08004 * 119.61930 * 179.74813 * 24 23 22 52 52 H 1.07992 * 119.62330 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4405 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2011 -3.6128 0.1247 11 6 2.9246 -3.5478 1.4015 12 6 1.9450 -3.7746 2.5547 13 6 2.6987 -3.7075 3.8846 14 6 1.7191 -3.9337 5.0379 15 6 1.1600 -5.3558 4.9608 16 6 0.1800 -5.5818 6.1137 17 6 0.9074 -5.3913 7.4462 18 6 1.4664 -3.9692 7.5234 19 6 2.4471 -3.7435 6.3701 20 6 3.1351 -3.6370 -1.0090 21 6 2.4094 -4.0944 -2.2480 22 6 2.2528 -5.4469 -2.5109 23 6 1.5743 -5.8213 -3.6604 24 6 1.0894 -4.8411 -4.5057 25 7 1.2612 -3.5640 -4.2263 26 6 1.8970 -3.1713 -3.1396 27 1 -0.4851 0.8399 -0.0004 28 1 0.6954 -2.5978 -0.9319 29 1 0.5573 -2.5180 0.8409 30 1 3.3888 -2.5672 1.5066 31 1 3.6950 -4.3186 1.4222 32 1 1.4808 -4.7552 2.4497 33 1 1.1747 -3.0037 2.5341 34 1 3.1632 -2.7272 3.9900 35 1 3.4688 -4.4786 3.9050 36 1 0.9009 -3.2172 4.9655 37 1 0.6414 -5.4913 4.0117 38 1 1.9783 -6.0723 5.0332 39 1 -0.2180 -6.5951 6.0590 40 1 -0.6382 -4.8653 6.0408 41 1 1.7256 -6.1079 7.5191 42 1 0.2093 -5.5527 8.2676 43 1 1.9850 -3.8337 8.4724 44 1 0.6482 -3.2528 7.4504 45 1 3.2653 -4.4600 6.4426 46 1 2.8454 -2.7304 6.4251 47 1 3.5357 -2.6363 -1.1711 48 1 3.9523 -4.3247 -0.7918 49 1 2.6465 -6.1908 -1.8343 50 1 1.4306 -6.8657 -3.8949 51 1 0.5632 -5.1245 -5.4054 52 1 2.0180 -2.1162 -2.9439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347656545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:08 Heat of formation + Delta-G solvation = -4.098223 kcal Electronic energy + Delta-G solvation = -26745.234278 eV Core-core repulsion = 23321.688602 eV Total energy + Delta-G solvation = -3423.545676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.70926 -38.80202 -37.04077 -33.97491 -32.69957 -31.95057 -31.18485 -30.72336 -29.32433 -27.12815 -25.72934 -24.09715 -23.12050 -22.88671 -22.39946 -21.29801 -20.24192 -19.66524 -19.42224 -16.70177 -16.35863 -15.82837 -15.44785 -15.13624 -14.78710 -14.71222 -14.54738 -14.18542 -14.01856 -13.68165 -13.39106 -13.23072 -12.94509 -12.61757 -12.59057 -12.38377 -12.24055 -12.06608 -11.59256 -11.40220 -11.24937 -11.09437 -11.05503 -10.85560 -10.81456 -10.78523 -10.60940 -10.36290 -10.21531 -10.07214 -9.98212 -9.80385 -9.66900 -9.55722 -9.29457 -8.93321 -8.47992 -8.41919 -7.19718 -6.03430 -4.12755 1.59679 1.76528 3.26194 3.34019 3.35243 4.25987 4.39134 4.68649 4.75193 4.80541 4.91468 5.06433 5.20183 5.21908 5.26903 5.28240 5.42219 5.45456 5.47001 5.50059 5.55322 5.56172 5.62465 5.66194 5.70116 5.84797 5.92278 6.01085 6.01636 6.04355 6.07513 6.09815 6.16973 6.23723 6.29996 6.30926 6.31821 6.40771 6.46120 6.51088 6.55118 6.60043 6.61410 6.86255 6.95789 6.98032 7.19970 7.28869 7.53878 7.90092 8.03122 8.25547 8.27575 8.47422 8.97349 9.53960 11.01377 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.003667 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.617994 B = 7633.401055 C = 9696.237426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.184 3.816 10 N -0.538 5.538 11 C 0.065 3.935 12 C -0.110 4.110 13 C -0.110 4.110 14 C -0.086 4.086 15 C -0.114 4.114 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.114 4.114 20 C 0.096 3.904 21 C -0.105 4.105 22 C -0.065 4.065 23 C -0.185 4.185 24 C 0.081 3.919 25 N -0.490 5.490 26 C 0.119 3.881 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.127 0.873 50 H 0.125 0.875 51 H 0.146 0.854 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 -12.202 7.157 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.711 3.289 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.074 0.926 9 C 0.059 3.941 10 N -0.261 5.261 11 C -0.064 4.064 12 C -0.148 4.148 13 C -0.148 4.148 14 C -0.104 4.104 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.033 4.033 21 C -0.108 4.108 22 C -0.092 4.092 23 C -0.205 4.205 24 C -0.076 4.076 25 N -0.198 5.198 26 C -0.038 4.038 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.145 0.855 50 H 0.143 0.857 51 H 0.163 0.837 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.655 -11.890 6.583 14.074 hybrid contribution 1.106 1.147 0.618 1.709 sum 4.761 -10.743 7.202 13.782 Atomic orbital electron populations 1.69933 1.05971 1.26802 1.49755 1.24907 0.94656 0.98903 0.94909 0.86742 0.79944 0.84016 0.78225 1.20557 1.21198 1.20017 1.21654 0.93111 0.92012 1.52008 0.92587 1.19809 0.91152 0.85271 0.97902 1.62564 1.16693 1.47075 0.99811 1.21894 0.95279 0.99459 0.89720 1.21549 0.98812 1.02108 0.92346 1.21570 0.97683 1.01254 0.94314 1.21153 0.98210 0.97048 0.94020 1.21619 0.98567 0.96619 0.98341 1.21551 0.98403 1.01106 0.94771 1.21526 0.99647 0.97040 0.97345 1.21546 0.99120 0.96944 0.98130 1.21600 0.97858 1.01311 0.94382 1.20855 0.93391 1.00239 0.88778 1.20888 0.99133 0.93687 0.97055 1.21396 0.96192 0.95842 0.95721 1.22004 1.01381 1.00491 0.96575 1.22621 0.97481 0.88584 0.98899 1.67707 1.14019 1.18541 1.19531 1.22925 0.91506 1.00825 0.88522 0.92804 0.95458 0.94452 0.93862 0.93550 0.92245 0.91002 0.92196 0.92784 0.91149 0.91375 0.92417 0.92440 0.92047 0.92320 0.92586 0.92530 0.92058 0.92324 0.92167 0.92252 0.92107 0.85460 0.85671 0.83700 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.88 20.92 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.55 -14.19 7.33 -34.44 -0.25 -14.44 16 8 H 0.06 1.43 5.95 -52.49 -0.31 1.12 16 9 C 0.18 4.50 4.72 -4.98 -0.02 4.47 16 10 N -0.54 -10.81 4.66 -237.51 -1.11 -11.92 16 11 C 0.06 1.17 4.77 -3.83 -0.02 1.16 16 12 C -0.11 -1.86 4.90 -26.73 -0.13 -1.99 16 13 C -0.11 -1.54 4.68 -26.73 -0.13 -1.66 16 14 C -0.09 -1.08 2.19 -90.62 -0.20 -1.28 16 15 C -0.11 -1.33 4.96 -26.73 -0.13 -1.46 16 16 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 17 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 18 C -0.12 -1.20 5.93 -26.70 -0.16 -1.36 16 19 C -0.11 -1.26 5.21 -26.70 -0.14 -1.40 16 20 C 0.10 1.76 4.97 -4.97 -0.02 1.73 16 21 C -0.11 -1.89 4.91 -104.48 -0.51 -2.40 16 22 C -0.06 -1.00 9.88 -39.28 -0.39 -1.39 16 23 C -0.18 -2.59 10.11 -39.44 -0.40 -2.99 16 24 C 0.08 1.26 11.18 -17.55 -0.20 1.06 16 25 N -0.49 -9.24 10.36 -13.25 -0.14 -9.37 16 26 C 0.12 2.33 9.68 -17.55 -0.17 2.16 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.03 0.74 6.60 -51.93 -0.34 0.39 16 29 H 0.04 1.00 6.35 -51.93 -0.33 0.67 16 30 H 0.04 0.88 6.58 -51.93 -0.34 0.53 16 31 H 0.05 0.74 7.86 -51.93 -0.41 0.34 16 32 H 0.06 0.97 6.57 -51.93 -0.34 0.63 16 33 H 0.07 1.43 6.50 -51.93 -0.34 1.10 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.86 6.57 -51.93 -0.34 0.52 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 1.19 6.08 -51.93 -0.32 0.87 16 48 H 0.06 0.97 7.79 -51.93 -0.40 0.56 16 49 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 50 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 51 H 0.15 1.77 8.06 -52.48 -0.42 1.34 16 52 H 0.16 3.36 8.06 -52.49 -0.42 2.93 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -28.37 396.98 -12.20 -40.58 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -9.37 Total: 4.27 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -3.28 Total: -20.70 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.51 Total: -46.02 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.37 -12.20 -40.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347656545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.479 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds