Wall clock time and date at job start Tue Mar 31 2020 12:10:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86808 * 119.99580 * 2 1
4 4 H 1.48498 * 109.46831 * 269.99840 * 3 2 1
5 5 H 1.48502 * 109.46896 * 29.99585 * 3 2 1
6 6 H 1.48498 * 109.47308 * 149.99550 * 3 2 1
7 7 C 1.37872 * 120.00645 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00081 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99885 * 0.02562 * 7 2 1
10 10 N 1.46900 * 109.47144 * 185.11685 * 9 7 2
11 11 C 1.46899 * 110.99978 * 62.67923 * 10 9 7
12 12 C 1.52999 * 109.46880 * 66.04790 * 11 10 9
13 13 C 1.53006 * 109.46897 * 179.97438 * 12 11 10
14 14 C 1.52995 * 109.47165 * 179.97438 * 13 12 11
15 15 C 1.53005 * 109.47181 * 64.99876 * 14 13 12
16 16 C 1.52995 * 109.47181 * 180.02562 * 15 14 13
17 17 C 1.53001 * 109.47172 * 300.00110 * 16 15 14
18 18 C 1.52996 * 109.47340 * 60.00250 * 17 16 15
19 19 C 1.53001 * 109.47172 * 184.99986 * 14 13 12
20 20 C 1.46901 * 110.99951 * 298.72599 * 10 9 7
21 21 C 1.50704 * 109.47180 * 287.87728 * 20 10 9
22 22 C 1.38675 * 120.41685 * 275.52108 * 21 20 10
23 23 C 1.38622 * 118.41505 * 179.78026 * 22 21 20
24 24 C 1.38225 * 119.16495 * 0.51838 * 23 22 21
25 25 N 1.31850 * 120.76393 * 359.71923 * 24 23 22
26 26 C 1.31887 * 121.72702 * 0.02562 * 25 24 23
27 27 H 0.96993 * 120.00605 * 0.02562 * 1 2 3
28 28 H 1.09003 * 109.46926 * 65.11399 * 9 7 2
29 29 H 1.09005 * 109.46919 * 305.11759 * 9 7 2
30 30 H 1.08997 * 109.47171 * 306.04841 * 11 10 9
31 31 H 1.08998 * 109.46936 * 186.04792 * 11 10 9
32 32 H 1.08997 * 109.47177 * 60.00055 * 12 11 10
33 33 H 1.08998 * 109.47106 * 299.99255 * 12 11 10
34 34 H 1.08997 * 109.47115 * 60.00075 * 13 12 11
35 35 H 1.08998 * 109.46974 * 300.00036 * 13 12 11
36 36 H 1.09002 * 109.47348 * 305.00185 * 14 13 12
37 37 H 1.08996 * 109.47172 * 300.00067 * 15 14 13
38 38 H 1.09002 * 109.46727 * 59.99929 * 15 14 13
39 39 H 1.09007 * 109.47107 * 180.02562 * 16 15 14
40 40 H 1.09002 * 109.47348 * 60.00310 * 16 15 14
41 41 H 1.09001 * 109.46844 * 299.99871 * 17 16 15
42 42 H 1.09001 * 109.47356 * 180.02562 * 17 16 15
43 43 H 1.08996 * 109.47354 * 180.02562 * 18 17 16
44 44 H 1.09000 * 109.46984 * 59.99396 * 18 17 16
45 45 H 1.09001 * 109.46844 * 299.99871 * 19 14 13
46 46 H 1.08993 * 109.47319 * 60.00331 * 19 14 13
47 47 H 1.09002 * 109.47380 * 47.87909 * 20 10 9
48 48 H 1.09002 * 109.47013 * 167.87516 * 20 10 9
49 49 H 1.07995 * 120.78871 * 0.02562 * 22 21 20
50 50 H 1.08005 * 120.41821 * 180.21830 * 23 22 21
51 51 H 1.08004 * 119.61930 * 179.74813 * 24 23 22
52 52 H 1.07992 * 119.62330 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4463 2.6527 0.7000
6 1 3.5466 1.4405 0.7001
7 6 2.0046 -1.1939 0.0005
8 1 3.0846 -1.1938 0.0001
9 6 1.2512 -2.4991 0.0005
10 7 2.2011 -3.6128 0.1247
11 6 2.9246 -3.5478 1.4015
12 6 1.9450 -3.7746 2.5547
13 6 2.6987 -3.7075 3.8846
14 6 1.7191 -3.9337 5.0379
15 6 1.1600 -5.3558 4.9608
16 6 0.1800 -5.5818 6.1137
17 6 0.9074 -5.3913 7.4462
18 6 1.4664 -3.9692 7.5234
19 6 2.4471 -3.7435 6.3701
20 6 3.1351 -3.6370 -1.0090
21 6 2.4094 -4.0944 -2.2480
22 6 2.2528 -5.4469 -2.5109
23 6 1.5743 -5.8213 -3.6604
24 6 1.0894 -4.8411 -4.5057
25 7 1.2612 -3.5640 -4.2263
26 6 1.8970 -3.1713 -3.1396
27 1 -0.4851 0.8399 -0.0004
28 1 0.6954 -2.5978 -0.9319
29 1 0.5573 -2.5180 0.8409
30 1 3.3888 -2.5672 1.5066
31 1 3.6950 -4.3186 1.4222
32 1 1.4808 -4.7552 2.4497
33 1 1.1747 -3.0037 2.5341
34 1 3.1632 -2.7272 3.9900
35 1 3.4688 -4.4786 3.9050
36 1 0.9009 -3.2172 4.9655
37 1 0.6414 -5.4913 4.0117
38 1 1.9783 -6.0723 5.0332
39 1 -0.2180 -6.5951 6.0590
40 1 -0.6382 -4.8653 6.0408
41 1 1.7256 -6.1079 7.5191
42 1 0.2093 -5.5527 8.2676
43 1 1.9850 -3.8337 8.4724
44 1 0.6482 -3.2528 7.4504
45 1 3.2653 -4.4600 6.4426
46 1 2.8454 -2.7304 6.4251
47 1 3.5357 -2.6363 -1.1711
48 1 3.9523 -4.3247 -0.7918
49 1 2.6465 -6.1908 -1.8343
50 1 1.4306 -6.8657 -3.8949
51 1 0.5632 -5.1245 -5.4054
52 1 2.0180 -2.1162 -2.9439
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000347656545.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:07
Heat of formation + Delta-G solvation = -18.186336 kcal
Electronic energy + Delta-G solvation = -26745.845185 eV
Core-core repulsion = 23321.688602 eV
Total energy + Delta-G solvation = -3424.156582 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.04254 -39.79228 -38.59386 -35.20153 -34.63559 -33.34992 -32.43689 -31.59815
-30.61000 -29.00308 -27.02614 -25.79972 -24.44656 -24.20651 -23.43358 -22.46172
-21.43000 -21.12963 -20.53441 -18.53481 -17.79860 -17.24721 -16.77349 -16.58079
-16.18645 -16.13126 -15.93505 -15.29138 -15.05512 -14.77922 -14.75944 -14.63731
-14.28119 -14.16638 -13.83222 -13.74964 -13.37885 -13.13352 -12.96180 -12.93634
-12.73447 -12.57662 -12.49342 -12.27990 -12.21188 -11.96110 -11.86918 -11.82990
-11.68944 -11.66299 -11.27617 -11.23555 -10.80287 -10.70935 -10.62346 -10.52015
-10.25640 -9.81421 -8.97017 -8.12361 -6.30371 0.30157 0.49597 1.34342
1.35698 1.44357 2.36837 2.92378 3.13243 3.48245 3.67741 3.81529
3.87873 3.93646 4.02764 4.09391 4.18208 4.24326 4.28488 4.34268
4.41114 4.43533 4.55839 4.64093 4.65391 4.70419 4.71379 4.74493
4.86404 4.87211 4.89003 4.97803 4.99795 5.02407 5.11577 5.16463
5.20205 5.27716 5.29237 5.30689 5.35757 5.39562 5.40055 5.45180
5.48340 5.52793 5.55128 5.63793 5.69365 5.80314 5.93650 6.08991
6.28661 6.58017 6.90914 7.15788 7.40216 8.89632
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.009956 B = 0.003667 C = 0.002887
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2811.617994 B = 7633.401055 C = 9696.237426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.016 3.984
3 Si 0.945 3.055
4 H -0.277 1.277
5 H -0.285 1.285
6 H -0.265 1.265
7 C -0.543 4.543
8 H 0.057 0.943
9 C 0.207 3.793
10 N -0.534 5.534
11 C 0.065 3.935
12 C -0.100 4.100
13 C -0.102 4.102
14 C -0.084 4.084
15 C -0.111 4.111
16 C -0.121 4.121
17 C -0.115 4.115
18 C -0.120 4.120
19 C -0.111 4.111
20 C 0.099 3.901
21 C -0.120 4.120
22 C -0.063 4.063
23 C -0.168 4.168
24 C 0.074 3.926
25 N -0.521 5.521
26 C 0.091 3.909
27 H 0.262 0.738
28 H -0.003 1.003
29 H 0.007 0.993
30 H 0.019 0.981
31 H 0.081 0.919
32 H 0.066 0.934
33 H 0.028 0.972
34 H 0.048 0.952
35 H 0.076 0.924
36 H 0.044 0.956
37 H 0.052 0.948
38 H 0.071 0.929
39 H 0.068 0.932
40 H 0.048 0.952
41 H 0.068 0.932
42 H 0.067 0.933
43 H 0.071 0.929
44 H 0.050 0.950
45 H 0.071 0.929
46 H 0.054 0.946
47 H 0.034 0.966
48 H 0.095 0.905
49 H 0.157 0.843
50 H 0.172 0.828
51 H 0.179 0.821
52 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.115 -15.139 7.864 18.123
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.183 4.183
3 Si 0.771 3.229
4 H -0.202 1.202
5 H -0.210 1.210
6 H -0.190 1.190
7 C -0.582 4.582
8 H 0.076 0.924
9 C 0.080 3.920
10 N -0.257 5.257
11 C -0.062 4.062
12 C -0.138 4.138
13 C -0.140 4.140
14 C -0.103 4.103
15 C -0.148 4.148
16 C -0.159 4.159
17 C -0.152 4.152
18 C -0.158 4.158
19 C -0.148 4.148
20 C -0.029 4.029
21 C -0.123 4.123
22 C -0.089 4.089
23 C -0.187 4.187
24 C -0.083 4.083
25 N -0.230 5.230
26 C -0.065 4.065
27 H 0.071 0.929
28 H 0.015 0.985
29 H 0.025 0.975
30 H 0.037 0.963
31 H 0.099 0.901
32 H 0.085 0.915
33 H 0.047 0.953
34 H 0.067 0.933
35 H 0.095 0.905
36 H 0.063 0.937
37 H 0.071 0.929
38 H 0.089 0.911
39 H 0.087 0.913
40 H 0.067 0.933
41 H 0.087 0.913
42 H 0.085 0.915
43 H 0.090 0.910
44 H 0.069 0.931
45 H 0.090 0.910
46 H 0.073 0.927
47 H 0.052 0.948
48 H 0.113 0.887
49 H 0.174 0.826
50 H 0.189 0.811
51 H 0.196 0.804
52 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 5.375 -14.828 7.299 17.379
hybrid contribution 0.554 1.947 0.311 2.048
sum 5.929 -12.881 7.609 16.093
Atomic orbital electron populations
1.70066 1.07543 1.27480 1.51469 1.25688 0.95366 1.02375 0.94877
0.85752 0.78955 0.79974 0.78250 1.20241 1.21045 1.18973 1.21888
0.93186 0.92744 1.50423 0.92447 1.19323 0.91379 0.86485 0.94832
1.62499 1.17187 1.44543 1.01487 1.21993 0.95931 0.99301 0.89010
1.21435 0.97804 1.00819 0.93749 1.21503 0.98031 1.01399 0.93042
1.21109 0.97326 0.97249 0.94625 1.21578 0.99090 0.95973 0.98180
1.21556 0.97897 1.01424 0.95007 1.21514 1.00071 0.96725 0.96899
1.21554 0.98682 0.97206 0.98321 1.21569 0.98239 1.01433 0.93591
1.20880 0.93772 0.99863 0.88366 1.20856 0.99913 0.94940 0.96556
1.21756 0.95696 0.94846 0.96645 1.22474 0.98859 1.02400 0.94947
1.23289 0.97120 0.87623 1.00287 1.67621 1.14775 1.20959 1.19647
1.22538 0.93921 0.99816 0.90267 0.92939 0.98539 0.97514 0.96256
0.90051 0.91539 0.95311 0.93338 0.90496 0.93723 0.92925 0.91070
0.91281 0.93294 0.91288 0.91454 0.91014 0.93126 0.91008 0.92689
0.94756 0.88703 0.82553 0.81080 0.80359 0.85753
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16
2 C 0.02 0.92 5.46 84.65 0.46 1.38 16
3 Si 0.94 44.40 29.54 68.60 2.03 46.42 16
4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16
5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16
7 C -0.54 -29.50 7.33 25.60 0.19 -29.31 16
8 H 0.06 3.05 5.95 -2.91 -0.02 3.04 16
9 C 0.21 10.70 4.72 85.56 0.40 11.10 16
10 N -0.53 -21.83 4.66 -905.35 -4.22 -26.05 16
11 C 0.07 2.36 4.77 86.30 0.41 2.77 16
12 C -0.10 -3.44 4.90 30.60 0.15 -3.29 16
13 C -0.10 -2.79 4.68 30.59 0.14 -2.65 16
14 C -0.08 -2.11 2.19 -10.79 -0.02 -2.14 16
15 C -0.11 -2.46 4.96 30.59 0.15 -2.31 16
16 C -0.12 -2.39 5.92 30.59 0.18 -2.20 16
17 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16
18 C -0.12 -2.21 5.93 30.61 0.18 -2.03 16
19 C -0.11 -2.30 5.21 30.61 0.16 -2.14 16
20 C 0.10 3.64 4.97 85.56 0.43 4.06 16
21 C -0.12 -4.32 4.91 -19.77 -0.10 -4.41 16
22 C -0.06 -1.77 9.88 22.47 0.22 -1.55 16
23 C -0.17 -4.09 10.11 22.36 0.23 -3.86 16
24 C 0.07 2.14 11.18 84.69 0.95 3.09 16
25 N -0.52 -20.01 10.36 -195.85 -2.03 -22.04 16
26 C 0.09 3.73 9.68 84.67 0.82 4.55 16
27 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16
28 H 0.00 -0.20 6.60 -2.39 -0.02 -0.22 16
29 H 0.01 0.39 6.35 -2.38 -0.02 0.38 16
30 H 0.02 0.79 6.58 -2.39 -0.02 0.77 16
31 H 0.08 2.40 7.86 -2.39 -0.02 2.38 16
32 H 0.07 2.17 6.57 -2.39 -0.02 2.15 16
33 H 0.03 1.22 6.50 -2.39 -0.02 1.20 16
34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16
35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
37 H 0.05 1.32 6.57 -2.39 -0.02 1.30 16
38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
39 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16
40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16
41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
47 H 0.03 1.42 6.08 -2.39 -0.01 1.41 16
48 H 0.09 2.80 7.79 -2.39 -0.02 2.78 16
49 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16
50 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16
51 H 0.18 3.80 8.06 -2.91 -0.02 3.77 16
52 H 0.12 5.80 8.06 -2.91 -0.02 5.78 16
Total: -1.00 -66.15 396.98 2.06 -64.09
By element:
Atomic # 1 Polarization: 23.06 SS G_CDS: 0.86 Total: 23.92 kcal
Atomic # 6 Polarization: -35.81 SS G_CDS: 5.13 Total: -30.68 kcal
Atomic # 7 Polarization: -97.79 SS G_CDS: -5.96 Total: -103.75 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal
Total: -66.15 2.06 -64.09 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000347656545.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.903 kcal
(2) G-P(sol) polarization free energy of solvation -66.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.186 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds