Wall clock time and date at job start Tue Mar 31 2020 12:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99580 * 2 1 4 4 H 1.48498 * 109.46831 * 269.99840 * 3 2 1 5 5 H 1.48502 * 109.46896 * 29.99585 * 3 2 1 6 6 H 1.48498 * 109.47308 * 149.99550 * 3 2 1 7 7 C 1.37872 * 120.00645 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99885 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47144 * 185.11685 * 9 7 2 11 11 C 1.46899 * 110.99978 * 62.67923 * 10 9 7 12 12 C 1.52999 * 109.46880 * 66.04790 * 11 10 9 13 13 C 1.53006 * 109.46897 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47165 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47181 * 64.99876 * 14 13 12 16 16 C 1.52995 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47172 * 300.00110 * 16 15 14 18 18 C 1.52996 * 109.47340 * 60.00250 * 17 16 15 19 19 C 1.53001 * 109.47172 * 184.99986 * 14 13 12 20 20 C 1.46901 * 110.99951 * 298.72599 * 10 9 7 21 21 C 1.50704 * 109.47180 * 287.87728 * 20 10 9 22 22 C 1.38675 * 120.41685 * 275.52108 * 21 20 10 23 23 C 1.38622 * 118.41505 * 179.78026 * 22 21 20 24 24 C 1.38225 * 119.16495 * 0.51838 * 23 22 21 25 25 N 1.31850 * 120.76393 * 359.71923 * 24 23 22 26 26 C 1.31887 * 121.72702 * 0.02562 * 25 24 23 27 27 H 0.96993 * 120.00605 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46926 * 65.11399 * 9 7 2 29 29 H 1.09005 * 109.46919 * 305.11759 * 9 7 2 30 30 H 1.08997 * 109.47171 * 306.04841 * 11 10 9 31 31 H 1.08998 * 109.46936 * 186.04792 * 11 10 9 32 32 H 1.08997 * 109.47177 * 60.00055 * 12 11 10 33 33 H 1.08998 * 109.47106 * 299.99255 * 12 11 10 34 34 H 1.08997 * 109.47115 * 60.00075 * 13 12 11 35 35 H 1.08998 * 109.46974 * 300.00036 * 13 12 11 36 36 H 1.09002 * 109.47348 * 305.00185 * 14 13 12 37 37 H 1.08996 * 109.47172 * 300.00067 * 15 14 13 38 38 H 1.09002 * 109.46727 * 59.99929 * 15 14 13 39 39 H 1.09007 * 109.47107 * 180.02562 * 16 15 14 40 40 H 1.09002 * 109.47348 * 60.00310 * 16 15 14 41 41 H 1.09001 * 109.46844 * 299.99871 * 17 16 15 42 42 H 1.09001 * 109.47356 * 180.02562 * 17 16 15 43 43 H 1.08996 * 109.47354 * 180.02562 * 18 17 16 44 44 H 1.09000 * 109.46984 * 59.99396 * 18 17 16 45 45 H 1.09001 * 109.46844 * 299.99871 * 19 14 13 46 46 H 1.08993 * 109.47319 * 60.00331 * 19 14 13 47 47 H 1.09002 * 109.47380 * 47.87909 * 20 10 9 48 48 H 1.09002 * 109.47013 * 167.87516 * 20 10 9 49 49 H 1.07995 * 120.78871 * 0.02562 * 22 21 20 50 50 H 1.08005 * 120.41821 * 180.21830 * 23 22 21 51 51 H 1.08004 * 119.61930 * 179.74813 * 24 23 22 52 52 H 1.07992 * 119.62330 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4405 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2011 -3.6128 0.1247 11 6 2.9246 -3.5478 1.4015 12 6 1.9450 -3.7746 2.5547 13 6 2.6987 -3.7075 3.8846 14 6 1.7191 -3.9337 5.0379 15 6 1.1600 -5.3558 4.9608 16 6 0.1800 -5.5818 6.1137 17 6 0.9074 -5.3913 7.4462 18 6 1.4664 -3.9692 7.5234 19 6 2.4471 -3.7435 6.3701 20 6 3.1351 -3.6370 -1.0090 21 6 2.4094 -4.0944 -2.2480 22 6 2.2528 -5.4469 -2.5109 23 6 1.5743 -5.8213 -3.6604 24 6 1.0894 -4.8411 -4.5057 25 7 1.2612 -3.5640 -4.2263 26 6 1.8970 -3.1713 -3.1396 27 1 -0.4851 0.8399 -0.0004 28 1 0.6954 -2.5978 -0.9319 29 1 0.5573 -2.5180 0.8409 30 1 3.3888 -2.5672 1.5066 31 1 3.6950 -4.3186 1.4222 32 1 1.4808 -4.7552 2.4497 33 1 1.1747 -3.0037 2.5341 34 1 3.1632 -2.7272 3.9900 35 1 3.4688 -4.4786 3.9050 36 1 0.9009 -3.2172 4.9655 37 1 0.6414 -5.4913 4.0117 38 1 1.9783 -6.0723 5.0332 39 1 -0.2180 -6.5951 6.0590 40 1 -0.6382 -4.8653 6.0408 41 1 1.7256 -6.1079 7.5191 42 1 0.2093 -5.5527 8.2676 43 1 1.9850 -3.8337 8.4724 44 1 0.6482 -3.2528 7.4504 45 1 3.2653 -4.4600 6.4426 46 1 2.8454 -2.7304 6.4251 47 1 3.5357 -2.6363 -1.1711 48 1 3.9523 -4.3247 -0.7918 49 1 2.6465 -6.1908 -1.8343 50 1 1.4306 -6.8657 -3.8949 51 1 0.5632 -5.1245 -5.4054 52 1 2.0180 -2.1162 -2.9439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347656545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:07 Heat of formation + Delta-G solvation = -18.186336 kcal Electronic energy + Delta-G solvation = -26745.845185 eV Core-core repulsion = 23321.688602 eV Total energy + Delta-G solvation = -3424.156582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.04254 -39.79228 -38.59386 -35.20153 -34.63559 -33.34992 -32.43689 -31.59815 -30.61000 -29.00308 -27.02614 -25.79972 -24.44656 -24.20651 -23.43358 -22.46172 -21.43000 -21.12963 -20.53441 -18.53481 -17.79860 -17.24721 -16.77349 -16.58079 -16.18645 -16.13126 -15.93505 -15.29138 -15.05512 -14.77922 -14.75944 -14.63731 -14.28119 -14.16638 -13.83222 -13.74964 -13.37885 -13.13352 -12.96180 -12.93634 -12.73447 -12.57662 -12.49342 -12.27990 -12.21188 -11.96110 -11.86918 -11.82990 -11.68944 -11.66299 -11.27617 -11.23555 -10.80287 -10.70935 -10.62346 -10.52015 -10.25640 -9.81421 -8.97017 -8.12361 -6.30371 0.30157 0.49597 1.34342 1.35698 1.44357 2.36837 2.92378 3.13243 3.48245 3.67741 3.81529 3.87873 3.93646 4.02764 4.09391 4.18208 4.24326 4.28488 4.34268 4.41114 4.43533 4.55839 4.64093 4.65391 4.70419 4.71379 4.74493 4.86404 4.87211 4.89003 4.97803 4.99795 5.02407 5.11577 5.16463 5.20205 5.27716 5.29237 5.30689 5.35757 5.39562 5.40055 5.45180 5.48340 5.52793 5.55128 5.63793 5.69365 5.80314 5.93650 6.08991 6.28661 6.58017 6.90914 7.15788 7.40216 8.89632 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.003667 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.617994 B = 7633.401055 C = 9696.237426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.016 3.984 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.207 3.793 10 N -0.534 5.534 11 C 0.065 3.935 12 C -0.100 4.100 13 C -0.102 4.102 14 C -0.084 4.084 15 C -0.111 4.111 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.111 4.111 20 C 0.099 3.901 21 C -0.120 4.120 22 C -0.063 4.063 23 C -0.168 4.168 24 C 0.074 3.926 25 N -0.521 5.521 26 C 0.091 3.909 27 H 0.262 0.738 28 H -0.003 1.003 29 H 0.007 0.993 30 H 0.019 0.981 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.034 0.966 48 H 0.095 0.905 49 H 0.157 0.843 50 H 0.172 0.828 51 H 0.179 0.821 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 -15.139 7.864 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.080 3.920 10 N -0.257 5.257 11 C -0.062 4.062 12 C -0.138 4.138 13 C -0.140 4.140 14 C -0.103 4.103 15 C -0.148 4.148 16 C -0.159 4.159 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.148 4.148 20 C -0.029 4.029 21 C -0.123 4.123 22 C -0.089 4.089 23 C -0.187 4.187 24 C -0.083 4.083 25 N -0.230 5.230 26 C -0.065 4.065 27 H 0.071 0.929 28 H 0.015 0.985 29 H 0.025 0.975 30 H 0.037 0.963 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.113 0.887 49 H 0.174 0.826 50 H 0.189 0.811 51 H 0.196 0.804 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.375 -14.828 7.299 17.379 hybrid contribution 0.554 1.947 0.311 2.048 sum 5.929 -12.881 7.609 16.093 Atomic orbital electron populations 1.70066 1.07543 1.27480 1.51469 1.25688 0.95366 1.02375 0.94877 0.85752 0.78955 0.79974 0.78250 1.20241 1.21045 1.18973 1.21888 0.93186 0.92744 1.50423 0.92447 1.19323 0.91379 0.86485 0.94832 1.62499 1.17187 1.44543 1.01487 1.21993 0.95931 0.99301 0.89010 1.21435 0.97804 1.00819 0.93749 1.21503 0.98031 1.01399 0.93042 1.21109 0.97326 0.97249 0.94625 1.21578 0.99090 0.95973 0.98180 1.21556 0.97897 1.01424 0.95007 1.21514 1.00071 0.96725 0.96899 1.21554 0.98682 0.97206 0.98321 1.21569 0.98239 1.01433 0.93591 1.20880 0.93772 0.99863 0.88366 1.20856 0.99913 0.94940 0.96556 1.21756 0.95696 0.94846 0.96645 1.22474 0.98859 1.02400 0.94947 1.23289 0.97120 0.87623 1.00287 1.67621 1.14775 1.20959 1.19647 1.22538 0.93921 0.99816 0.90267 0.92939 0.98539 0.97514 0.96256 0.90051 0.91539 0.95311 0.93338 0.90496 0.93723 0.92925 0.91070 0.91281 0.93294 0.91288 0.91454 0.91014 0.93126 0.91008 0.92689 0.94756 0.88703 0.82553 0.81080 0.80359 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 2 C 0.02 0.92 5.46 84.65 0.46 1.38 16 3 Si 0.94 44.40 29.54 68.60 2.03 46.42 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.54 -29.50 7.33 25.60 0.19 -29.31 16 8 H 0.06 3.05 5.95 -2.91 -0.02 3.04 16 9 C 0.21 10.70 4.72 85.56 0.40 11.10 16 10 N -0.53 -21.83 4.66 -905.35 -4.22 -26.05 16 11 C 0.07 2.36 4.77 86.30 0.41 2.77 16 12 C -0.10 -3.44 4.90 30.60 0.15 -3.29 16 13 C -0.10 -2.79 4.68 30.59 0.14 -2.65 16 14 C -0.08 -2.11 2.19 -10.79 -0.02 -2.14 16 15 C -0.11 -2.46 4.96 30.59 0.15 -2.31 16 16 C -0.12 -2.39 5.92 30.59 0.18 -2.20 16 17 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 18 C -0.12 -2.21 5.93 30.61 0.18 -2.03 16 19 C -0.11 -2.30 5.21 30.61 0.16 -2.14 16 20 C 0.10 3.64 4.97 85.56 0.43 4.06 16 21 C -0.12 -4.32 4.91 -19.77 -0.10 -4.41 16 22 C -0.06 -1.77 9.88 22.47 0.22 -1.55 16 23 C -0.17 -4.09 10.11 22.36 0.23 -3.86 16 24 C 0.07 2.14 11.18 84.69 0.95 3.09 16 25 N -0.52 -20.01 10.36 -195.85 -2.03 -22.04 16 26 C 0.09 3.73 9.68 84.67 0.82 4.55 16 27 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.00 -0.20 6.60 -2.39 -0.02 -0.22 16 29 H 0.01 0.39 6.35 -2.38 -0.02 0.38 16 30 H 0.02 0.79 6.58 -2.39 -0.02 0.77 16 31 H 0.08 2.40 7.86 -2.39 -0.02 2.38 16 32 H 0.07 2.17 6.57 -2.39 -0.02 2.15 16 33 H 0.03 1.22 6.50 -2.39 -0.02 1.20 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.32 6.57 -2.39 -0.02 1.30 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.03 1.42 6.08 -2.39 -0.01 1.41 16 48 H 0.09 2.80 7.79 -2.39 -0.02 2.78 16 49 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 50 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 51 H 0.18 3.80 8.06 -2.91 -0.02 3.77 16 52 H 0.12 5.80 8.06 -2.91 -0.02 5.78 16 Total: -1.00 -66.15 396.98 2.06 -64.09 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.86 Total: 23.92 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 5.13 Total: -30.68 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.96 Total: -103.75 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.15 2.06 -64.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347656545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.903 kcal (2) G-P(sol) polarization free energy of solvation -66.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds