Wall clock time and date at job start Tue Mar 31 2020 12:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99879 * 2 1 4 4 H 1.48491 * 109.47390 * 269.99545 * 3 2 1 5 5 H 1.48497 * 109.47111 * 29.99735 * 3 2 1 6 6 H 1.48510 * 109.46939 * 149.99609 * 3 2 1 7 7 C 1.37878 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00344 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47684 * 185.09256 * 9 7 2 11 11 C 1.46902 * 111.00051 * 297.73802 * 10 9 7 12 12 C 1.52998 * 109.47005 * 287.10537 * 11 10 9 13 13 C 1.53003 * 109.47058 * 184.80432 * 12 11 10 14 14 C 1.54243 * 108.89742 * 296.39516 * 13 12 11 15 15 C 1.50554 * 108.48295 * 159.17681 * 14 13 12 16 16 C 1.54066 * 112.41246 * 94.26704 * 15 14 13 17 17 C 1.54064 * 112.81516 * 318.27642 * 16 15 14 18 18 C 1.50468 * 112.49806 * 318.28578 * 17 16 15 19 19 C 1.45539 * 108.89443 * 173.60181 * 13 12 11 20 20 C 1.46908 * 110.99717 * 61.68761 * 10 9 7 21 21 C 1.50698 * 109.46750 * 66.05146 * 20 10 9 22 22 C 1.38223 * 119.62310 * 95.02420 * 21 20 10 23 23 C 1.38626 * 119.16673 * 179.70286 * 22 21 20 24 24 C 1.38674 * 118.41464 * 0.50922 * 23 22 21 25 25 C 1.38186 * 119.16593 * 359.50830 * 24 23 22 26 26 N 1.31863 * 119.61678 * 274.99829 * 21 20 10 27 27 H 0.96999 * 120.00095 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46897 * 65.09212 * 9 7 2 29 29 H 1.09002 * 109.46969 * 305.09768 * 9 7 2 30 30 H 1.09008 * 109.46639 * 47.10353 * 11 10 9 31 31 H 1.09000 * 109.46894 * 167.09820 * 11 10 9 32 32 H 1.08996 * 109.46758 * 304.80128 * 12 11 10 33 33 H 1.08996 * 109.47263 * 64.80568 * 12 11 10 34 34 H 1.09004 * 108.87170 * 54.99509 * 13 12 11 35 35 H 1.09004 * 109.62494 * 278.97462 * 14 13 12 36 36 H 1.09002 * 109.62612 * 39.55335 * 14 13 12 37 37 H 1.08993 * 108.92578 * 333.51024 * 15 14 13 38 38 H 1.08999 * 108.83504 * 214.96089 * 15 14 13 39 39 H 1.09000 * 108.80938 * 197.41352 * 16 15 14 40 40 H 1.09001 * 108.72800 * 79.07886 * 16 15 14 41 41 H 1.09000 * 108.87582 * 197.50791 * 17 16 15 42 42 H 1.09003 * 108.87772 * 79.06900 * 17 16 15 43 43 H 1.08997 * 109.62767 * 334.44244 * 18 17 16 44 44 H 1.09000 * 109.62784 * 213.86557 * 18 17 16 45 45 H 1.09004 * 108.89496 * 303.44256 * 19 13 12 46 46 H 1.08996 * 108.89429 * 62.03478 * 19 13 12 47 47 H 1.09000 * 109.47188 * 306.05089 * 20 10 9 48 48 H 1.09000 * 109.47163 * 186.04815 * 20 10 9 49 49 H 1.08003 * 120.41407 * 359.94536 * 22 21 20 50 50 H 1.07993 * 120.79616 * 180.27274 * 23 22 21 51 51 H 1.08004 * 120.41798 * 179.78615 * 24 23 22 52 52 H 1.07999 * 119.61420 * 180.24840 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2008 -3.6130 0.1241 11 6 3.1195 -3.6511 -1.0217 12 6 2.3698 -4.1463 -2.2601 13 6 3.3520 -4.3003 -3.4231 14 6 3.9289 -2.9142 -3.7766 15 6 5.2209 -3.1114 -4.5239 16 6 5.0234 -3.0998 -6.0518 17 6 3.7703 -3.8771 -6.4981 18 6 3.5955 -5.1684 -5.7459 19 6 2.6596 -4.9140 -4.5465 20 6 2.9416 -3.5351 1.3904 21 6 1.9918 -3.7445 2.5415 22 6 1.8444 -5.0070 3.0846 23 6 0.9728 -5.1877 4.1473 24 6 0.2709 -4.0887 4.6193 25 6 0.4698 -2.8569 4.0255 26 7 1.3114 -2.7211 3.0193 27 1 -0.4850 0.8400 -0.0004 28 1 0.6950 -2.5976 -0.9318 29 1 0.5574 -2.5182 0.8411 30 1 3.5088 -2.6502 -1.2086 31 1 3.9458 -4.3273 -0.8024 32 1 1.9084 -5.1099 -2.0442 33 1 1.5976 -3.4258 -2.5296 34 1 4.1676 -4.9530 -3.1117 35 1 3.2207 -2.3718 -4.4031 36 1 4.1180 -2.3522 -2.8620 37 1 5.6559 -4.0671 -4.2317 38 1 5.9105 -2.3124 -4.2514 39 1 5.8997 -3.5453 -6.5228 40 1 4.9332 -2.0660 -6.3852 41 1 3.8524 -4.0973 -7.5625 42 1 2.8917 -3.2527 -6.3360 43 1 4.5639 -5.5172 -5.3872 44 1 3.1536 -5.9178 -6.4026 45 1 2.2344 -5.8640 -4.2228 46 1 1.8511 -4.2560 -4.8649 47 1 3.4086 -2.5542 1.4784 48 1 3.7111 -4.3069 1.4092 49 1 2.4042 -5.8414 2.6886 50 1 0.8406 -6.1617 4.5946 51 1 -0.4192 -4.1934 5.4435 52 1 -0.0701 -1.9954 4.3899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347783019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:11 Heat of formation + Delta-G solvation = 14.758215 kcal Electronic energy + Delta-G solvation = -27328.388070 eV Core-core repulsion = 23905.660071 eV Total energy + Delta-G solvation = -3422.727999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.68625 -39.13786 -36.71016 -33.73282 -32.37199 -32.03711 -31.87606 -31.10639 -28.45375 -27.01873 -25.30532 -24.62511 -23.68820 -22.93954 -22.46796 -21.06203 -19.90749 -19.55505 -18.98356 -16.51806 -16.13683 -15.77942 -15.59499 -15.08588 -14.90081 -14.78444 -14.55707 -14.29772 -13.81771 -13.62038 -13.15018 -13.01624 -12.80402 -12.71612 -12.47757 -12.32761 -12.09767 -11.94681 -11.68741 -11.56685 -11.14679 -10.93004 -10.83748 -10.72485 -10.59501 -10.37294 -10.31858 -10.20070 -10.19681 -10.00055 -9.91178 -9.81530 -9.64528 -9.45452 -9.28530 -8.64498 -8.49299 -8.22687 -7.07546 -5.85591 -3.90134 1.62220 1.80689 3.35802 3.42721 3.45545 4.29974 4.54226 4.71096 4.82052 4.91550 4.94545 5.12871 5.21605 5.26691 5.30782 5.35930 5.43477 5.46695 5.47283 5.52829 5.55014 5.62174 5.66783 5.82609 5.89659 5.94969 5.98714 6.09439 6.14528 6.18059 6.20222 6.20729 6.26238 6.29430 6.33185 6.39842 6.45941 6.49013 6.53663 6.56833 6.59714 6.67563 6.71886 6.80703 6.99522 7.05017 7.21090 7.41387 7.72193 8.06996 8.15215 8.39921 8.44838 8.72982 9.15620 9.73431 11.20959 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011286 B = 0.004037 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.267064 B = 6934.037668 C = 8725.685830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.186 3.814 10 N -0.539 5.539 11 C 0.060 3.940 12 C -0.106 4.106 13 C -0.080 4.080 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.111 4.111 20 C 0.105 3.895 21 C 0.157 3.843 22 C -0.167 4.167 23 C -0.086 4.086 24 C -0.190 4.190 25 C 0.099 3.901 26 N -0.442 5.442 27 H 0.258 0.742 28 H 0.023 0.977 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.127 0.873 50 H 0.124 0.876 51 H 0.124 0.876 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 -11.349 -3.083 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.069 0.931 9 C 0.061 3.939 10 N -0.263 5.263 11 C -0.068 4.068 12 C -0.144 4.144 13 C -0.099 4.099 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.024 4.024 21 C 0.019 3.981 22 C -0.187 4.187 23 C -0.113 4.113 24 C -0.211 4.211 25 C -0.059 4.059 26 N -0.150 5.150 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.145 0.855 50 H 0.142 0.858 51 H 0.142 0.858 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.121 -10.839 -3.462 12.921 hybrid contribution 0.605 1.001 0.449 1.253 sum 6.727 -9.838 -3.014 12.293 Atomic orbital electron populations 1.69938 1.05886 1.26196 1.50933 1.24809 0.94559 0.98523 0.95208 0.86790 0.80062 0.84502 0.77746 1.21018 1.21383 1.20158 1.21498 0.92676 0.91958 1.50474 0.93075 1.19823 0.91219 0.85157 0.97730 1.62602 1.17058 1.47275 0.99344 1.22012 0.94068 0.99855 0.90824 1.21601 0.98026 1.01319 0.93425 1.20041 0.98226 0.96330 0.95310 1.21498 0.96372 0.97009 1.00576 1.21357 0.98269 1.01350 0.94437 1.21905 0.97428 0.99819 0.96157 1.21337 0.98601 0.96829 0.98843 1.21317 0.99980 0.96947 0.97074 1.20536 0.98390 1.00598 0.95309 1.20825 0.92712 1.01020 0.87844 1.21278 0.94031 0.88309 0.94502 1.21909 1.00723 0.98346 0.97753 1.21418 0.95360 0.98614 0.95859 1.22037 1.02046 0.94553 1.02438 1.22806 0.94851 0.96482 0.91716 1.67801 1.04840 1.33683 1.08691 0.93255 0.95947 0.93621 0.92962 0.93612 0.92404 0.91459 0.92169 0.91834 0.90723 0.92411 0.92747 0.92934 0.92626 0.93011 0.91921 0.91896 0.92530 0.92566 0.92147 0.91911 0.91784 0.85496 0.85769 0.85755 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.36 7.32 -34.44 -0.25 -14.62 16 8 H 0.05 1.39 5.97 -52.48 -0.31 1.08 16 9 C 0.19 4.78 4.70 -4.98 -0.02 4.76 16 10 N -0.54 -11.38 4.65 -237.51 -1.10 -12.48 16 11 C 0.06 1.12 4.48 -3.82 -0.02 1.10 16 12 C -0.11 -1.78 4.58 -26.73 -0.12 -1.90 16 13 C -0.08 -1.10 1.71 -93.49 -0.16 -1.26 16 14 C -0.12 -1.68 4.91 -27.30 -0.13 -1.81 16 15 C -0.12 -1.40 5.32 -27.40 -0.15 -1.55 16 16 C -0.12 -1.25 5.85 -25.62 -0.15 -1.40 16 17 C -0.12 -1.27 5.31 -27.44 -0.15 -1.42 16 18 C -0.12 -1.24 5.61 -27.35 -0.15 -1.39 16 19 C -0.11 -1.37 4.44 -29.60 -0.13 -1.50 16 20 C 0.10 2.06 5.08 -4.97 -0.03 2.04 16 21 C 0.16 3.07 5.70 -82.59 -0.47 2.59 16 22 C -0.17 -2.66 9.72 -39.44 -0.38 -3.05 16 23 C -0.09 -1.22 10.18 -39.28 -0.40 -1.62 16 24 C -0.19 -2.77 10.11 -39.44 -0.40 -3.17 16 25 C 0.10 1.77 11.18 -17.55 -0.20 1.57 16 26 N -0.44 -9.47 8.80 -9.47 -0.08 -9.56 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.02 0.63 6.76 -51.93 -0.35 0.27 16 29 H 0.05 1.30 6.25 -51.93 -0.32 0.98 16 30 H 0.05 1.08 4.43 -51.92 -0.23 0.85 16 31 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 32 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 33 H 0.07 1.32 6.95 -51.93 -0.36 0.96 16 34 H 0.06 0.79 7.46 -51.93 -0.39 0.41 16 35 H 0.06 0.96 6.97 -51.93 -0.36 0.60 16 36 H 0.07 1.22 5.90 -51.93 -0.31 0.91 16 37 H 0.06 0.66 6.63 -51.93 -0.34 0.32 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.73 6.62 -51.93 -0.34 0.39 16 43 H 0.06 0.66 6.98 -51.93 -0.36 0.30 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 46 H 0.06 0.80 7.46 -51.93 -0.39 0.41 16 47 H 0.06 1.40 6.51 -51.93 -0.34 1.06 16 48 H 0.06 1.06 7.75 -51.93 -0.40 0.66 16 49 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 50 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 51 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 52 H 0.15 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -30.41 387.04 -12.04 -42.45 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.99 Total: 3.35 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -3.41 Total: -20.71 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.45 Total: -47.86 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.41 -12.04 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347783019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.207 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds