Wall clock time and date at job start Tue Mar 31 2020 12:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99879 * 2 1 4 4 H 1.48491 * 109.47390 * 269.99545 * 3 2 1 5 5 H 1.48497 * 109.47111 * 29.99735 * 3 2 1 6 6 H 1.48510 * 109.46939 * 149.99609 * 3 2 1 7 7 C 1.37878 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00344 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47684 * 185.09256 * 9 7 2 11 11 C 1.46902 * 111.00051 * 297.73802 * 10 9 7 12 12 C 1.52998 * 109.47005 * 287.10537 * 11 10 9 13 13 C 1.53003 * 109.47058 * 184.80432 * 12 11 10 14 14 C 1.54243 * 108.89742 * 296.39516 * 13 12 11 15 15 C 1.50554 * 108.48295 * 159.17681 * 14 13 12 16 16 C 1.54066 * 112.41246 * 94.26704 * 15 14 13 17 17 C 1.54064 * 112.81516 * 318.27642 * 16 15 14 18 18 C 1.50468 * 112.49806 * 318.28578 * 17 16 15 19 19 C 1.45539 * 108.89443 * 173.60181 * 13 12 11 20 20 C 1.46908 * 110.99717 * 61.68761 * 10 9 7 21 21 C 1.50698 * 109.46750 * 66.05146 * 20 10 9 22 22 C 1.38223 * 119.62310 * 95.02420 * 21 20 10 23 23 C 1.38626 * 119.16673 * 179.70286 * 22 21 20 24 24 C 1.38674 * 118.41464 * 0.50922 * 23 22 21 25 25 C 1.38186 * 119.16593 * 359.50830 * 24 23 22 26 26 N 1.31863 * 119.61678 * 274.99829 * 21 20 10 27 27 H 0.96999 * 120.00095 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46897 * 65.09212 * 9 7 2 29 29 H 1.09002 * 109.46969 * 305.09768 * 9 7 2 30 30 H 1.09008 * 109.46639 * 47.10353 * 11 10 9 31 31 H 1.09000 * 109.46894 * 167.09820 * 11 10 9 32 32 H 1.08996 * 109.46758 * 304.80128 * 12 11 10 33 33 H 1.08996 * 109.47263 * 64.80568 * 12 11 10 34 34 H 1.09004 * 108.87170 * 54.99509 * 13 12 11 35 35 H 1.09004 * 109.62494 * 278.97462 * 14 13 12 36 36 H 1.09002 * 109.62612 * 39.55335 * 14 13 12 37 37 H 1.08993 * 108.92578 * 333.51024 * 15 14 13 38 38 H 1.08999 * 108.83504 * 214.96089 * 15 14 13 39 39 H 1.09000 * 108.80938 * 197.41352 * 16 15 14 40 40 H 1.09001 * 108.72800 * 79.07886 * 16 15 14 41 41 H 1.09000 * 108.87582 * 197.50791 * 17 16 15 42 42 H 1.09003 * 108.87772 * 79.06900 * 17 16 15 43 43 H 1.08997 * 109.62767 * 334.44244 * 18 17 16 44 44 H 1.09000 * 109.62784 * 213.86557 * 18 17 16 45 45 H 1.09004 * 108.89496 * 303.44256 * 19 13 12 46 46 H 1.08996 * 108.89429 * 62.03478 * 19 13 12 47 47 H 1.09000 * 109.47188 * 306.05089 * 20 10 9 48 48 H 1.09000 * 109.47163 * 186.04815 * 20 10 9 49 49 H 1.08003 * 120.41407 * 359.94536 * 22 21 20 50 50 H 1.07993 * 120.79616 * 180.27274 * 23 22 21 51 51 H 1.08004 * 120.41798 * 179.78615 * 24 23 22 52 52 H 1.07999 * 119.61420 * 180.24840 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2008 -3.6130 0.1241 11 6 3.1195 -3.6511 -1.0217 12 6 2.3698 -4.1463 -2.2601 13 6 3.3520 -4.3003 -3.4231 14 6 3.9289 -2.9142 -3.7766 15 6 5.2209 -3.1114 -4.5239 16 6 5.0234 -3.0998 -6.0518 17 6 3.7703 -3.8771 -6.4981 18 6 3.5955 -5.1684 -5.7459 19 6 2.6596 -4.9140 -4.5465 20 6 2.9416 -3.5351 1.3904 21 6 1.9918 -3.7445 2.5415 22 6 1.8444 -5.0070 3.0846 23 6 0.9728 -5.1877 4.1473 24 6 0.2709 -4.0887 4.6193 25 6 0.4698 -2.8569 4.0255 26 7 1.3114 -2.7211 3.0193 27 1 -0.4850 0.8400 -0.0004 28 1 0.6950 -2.5976 -0.9318 29 1 0.5574 -2.5182 0.8411 30 1 3.5088 -2.6502 -1.2086 31 1 3.9458 -4.3273 -0.8024 32 1 1.9084 -5.1099 -2.0442 33 1 1.5976 -3.4258 -2.5296 34 1 4.1676 -4.9530 -3.1117 35 1 3.2207 -2.3718 -4.4031 36 1 4.1180 -2.3522 -2.8620 37 1 5.6559 -4.0671 -4.2317 38 1 5.9105 -2.3124 -4.2514 39 1 5.8997 -3.5453 -6.5228 40 1 4.9332 -2.0660 -6.3852 41 1 3.8524 -4.0973 -7.5625 42 1 2.8917 -3.2527 -6.3360 43 1 4.5639 -5.5172 -5.3872 44 1 3.1536 -5.9178 -6.4026 45 1 2.2344 -5.8640 -4.2228 46 1 1.8511 -4.2560 -4.8649 47 1 3.4086 -2.5542 1.4784 48 1 3.7111 -4.3069 1.4092 49 1 2.4042 -5.8414 2.6886 50 1 0.8406 -6.1617 4.5946 51 1 -0.4192 -4.1934 5.4435 52 1 -0.0701 -1.9954 4.3899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347783019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:10 Heat of formation + Delta-G solvation = -1.596856 kcal Electronic energy + Delta-G solvation = -27329.097279 eV Core-core repulsion = 23905.660071 eV Total energy + Delta-G solvation = -3423.437208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02403 -40.24688 -38.30566 -34.98097 -34.41441 -33.19454 -32.99190 -32.46785 -29.88597 -28.87985 -26.66615 -25.92900 -25.15672 -24.20892 -23.89377 -22.34635 -21.26342 -21.00050 -20.01646 -18.48460 -17.51859 -17.06686 -16.86277 -16.76559 -16.21349 -16.11715 -16.10325 -15.41742 -15.26320 -14.92218 -14.50603 -14.43700 -14.11808 -14.01060 -13.75821 -13.69734 -13.44945 -13.08302 -12.96822 -12.92769 -12.77710 -12.73670 -12.51911 -12.32841 -12.14749 -11.87277 -11.77954 -11.59727 -11.41290 -11.28738 -11.18925 -11.14901 -10.99958 -10.84671 -10.63406 -10.46338 -9.99412 -9.79587 -8.91304 -8.04345 -6.17297 0.33838 0.59191 1.33083 1.34438 1.43377 2.41426 2.94226 3.23170 3.49933 3.68477 3.75621 3.92821 3.97467 4.00093 4.13350 4.22999 4.26881 4.34667 4.37787 4.41934 4.47631 4.49214 4.53332 4.61009 4.65748 4.75897 4.85235 4.90145 4.93536 4.95352 5.00393 5.06865 5.08886 5.20049 5.24348 5.29676 5.34552 5.35943 5.38423 5.40941 5.41945 5.43329 5.44480 5.48733 5.54159 5.60935 5.70040 5.71940 5.88396 5.99207 6.17106 6.32716 6.62504 6.99095 7.40564 7.49719 8.99471 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011286 B = 0.004037 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.267064 B = 6934.037668 C = 8725.685830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.048 0.952 9 C 0.210 3.790 10 N -0.535 5.535 11 C 0.062 3.938 12 C -0.097 4.097 13 C -0.068 4.068 14 C -0.115 4.115 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.109 4.109 19 C -0.111 4.111 20 C 0.108 3.892 21 C 0.122 3.878 22 C -0.162 4.162 23 C -0.079 4.079 24 C -0.175 4.175 25 C 0.069 3.931 26 N -0.499 5.499 27 H 0.258 0.742 28 H -0.010 1.010 29 H 0.017 0.983 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.027 0.973 48 H 0.101 0.899 49 H 0.155 0.845 50 H 0.171 0.829 51 H 0.163 0.837 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -14.067 -2.909 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.066 0.934 9 C 0.083 3.917 10 N -0.259 5.259 11 C -0.066 4.066 12 C -0.135 4.135 13 C -0.087 4.087 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.021 4.021 21 C -0.016 4.016 22 C -0.182 4.182 23 C -0.105 4.105 24 C -0.194 4.194 25 C -0.088 4.088 26 N -0.209 5.209 27 H 0.067 0.933 28 H 0.008 0.992 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.045 0.955 48 H 0.119 0.881 49 H 0.173 0.827 50 H 0.188 0.812 51 H 0.181 0.819 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.800 -13.565 -3.292 15.990 hybrid contribution 0.052 1.782 0.476 1.846 sum 7.852 -11.782 -2.815 14.436 Atomic orbital electron populations 1.70068 1.07329 1.26889 1.52438 1.25568 0.95340 1.01924 0.95258 0.85820 0.78834 0.80557 0.78028 1.20130 1.21101 1.19729 1.21692 0.92501 0.92832 1.49037 0.93438 1.19313 0.91481 0.86316 0.94601 1.62530 1.17596 1.44643 1.01100 1.22091 0.94537 0.99360 0.90578 1.21526 0.97741 1.00114 0.94095 1.19975 0.97829 0.96330 0.94541 1.21434 0.97534 0.96904 0.99421 1.21313 0.96570 1.02003 0.95175 1.21898 0.98286 0.99882 0.95092 1.21348 0.97793 0.96635 0.99955 1.21280 0.99915 0.97190 0.96221 1.20518 0.98348 1.00340 0.95667 1.20881 0.93463 1.00326 0.87399 1.21322 0.95174 0.89761 0.95350 1.22183 1.00871 0.97386 0.97796 1.21951 0.93575 1.00285 0.94644 1.22406 1.01588 0.93154 1.02302 1.23040 0.95241 0.98501 0.92038 1.67613 1.06732 1.35863 1.10708 0.93332 0.99195 0.96536 0.95430 0.90469 0.91878 0.95372 0.90328 0.93529 0.93374 0.91076 0.92839 0.91016 0.93108 0.91361 0.93697 0.90906 0.90995 0.91799 0.93851 0.95467 0.88110 0.82743 0.81187 0.81937 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 2 C 0.02 1.03 5.46 84.66 0.46 1.49 16 3 Si 0.94 46.76 29.54 68.60 2.03 48.78 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.52 -29.98 7.32 25.60 0.19 -29.79 16 8 H 0.05 2.72 5.97 -2.91 -0.02 2.70 16 9 C 0.21 11.45 4.70 85.56 0.40 11.86 16 10 N -0.54 -23.31 4.65 -905.35 -4.21 -27.52 16 11 C 0.06 2.34 4.48 86.30 0.39 2.73 16 12 C -0.10 -3.35 4.58 30.59 0.14 -3.21 16 13 C -0.07 -1.83 1.71 -12.65 -0.02 -1.86 16 14 C -0.12 -3.37 4.91 30.22 0.15 -3.22 16 15 C -0.11 -2.58 5.32 30.16 0.16 -2.42 16 16 C -0.11 -2.27 5.85 31.31 0.18 -2.09 16 17 C -0.12 -2.37 5.31 30.13 0.16 -2.21 16 18 C -0.11 -2.06 5.61 30.20 0.17 -1.89 16 19 C -0.11 -2.66 4.44 28.74 0.13 -2.53 16 20 C 0.11 4.31 5.08 85.55 0.43 4.75 16 21 C 0.12 4.79 5.70 42.55 0.24 5.03 16 22 C -0.16 -4.81 9.72 22.36 0.22 -4.60 16 23 C -0.08 -1.93 10.18 22.47 0.23 -1.70 16 24 C -0.17 -4.68 10.11 22.36 0.23 -4.46 16 25 C 0.07 2.50 11.18 84.67 0.95 3.45 16 26 N -0.50 -22.30 8.80 -183.89 -1.62 -23.92 16 27 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 28 H -0.01 -0.60 6.76 -2.39 -0.02 -0.62 16 29 H 0.02 1.01 6.25 -2.39 -0.01 0.99 16 30 H 0.03 1.19 4.43 -2.38 -0.01 1.18 16 31 H 0.08 2.43 7.79 -2.39 -0.02 2.41 16 32 H 0.06 2.10 8.05 -2.39 -0.02 2.08 16 33 H 0.03 1.18 6.95 -2.39 -0.02 1.16 16 34 H 0.08 1.88 7.46 -2.38 -0.02 1.86 16 35 H 0.05 1.49 6.97 -2.39 -0.02 1.47 16 36 H 0.05 1.65 5.90 -2.39 -0.01 1.64 16 37 H 0.07 1.44 6.63 -2.39 -0.02 1.43 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 1.04 6.62 -2.39 -0.02 1.03 16 43 H 0.07 1.27 6.98 -2.39 -0.02 1.25 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.43 8.04 -2.38 -0.02 1.41 16 46 H 0.04 1.18 7.46 -2.39 -0.02 1.16 16 47 H 0.03 1.27 6.51 -2.39 -0.02 1.25 16 48 H 0.10 3.19 7.75 -2.39 -0.02 3.17 16 49 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 50 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 51 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 52 H 0.15 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -71.47 387.04 2.16 -69.31 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.88 Total: 21.70 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 4.80 Total: -30.67 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -5.55 Total: -109.12 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -71.47 2.16 -69.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347783019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.715 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds