Wall clock time and date at job start Tue Mar 31 2020 11:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33848 * 126.09080 * 2 1 4 4 H 0.97003 * 125.00373 * 359.97438 * 3 2 1 5 5 N 1.39920 * 109.99260 * 180.02562 * 3 2 1 6 6 C 1.32034 * 109.07376 * 359.94779 * 5 3 2 7 7 N 1.34241 * 134.42640 * 180.02562 * 6 5 3 8 8 C 1.30843 * 121.18587 * 180.02562 * 7 6 5 9 9 C 1.39463 * 122.60985 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.66152 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47086 * 270.01902 * 10 9 8 12 12 C 1.46895 * 111.00124 * 293.95970 * 11 10 9 13 13 C 1.50705 * 109.46811 * 165.31180 * 12 11 10 14 14 H 1.08001 * 119.99889 * 2.36070 * 13 12 11 15 15 C 1.37879 * 119.99790 * 182.35428 * 13 12 11 16 16 N 1.31519 * 119.99820 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00032 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46991 * 89.99881 * 17 15 13 19 19 H 1.48500 * 109.47084 * 209.99585 * 17 15 13 20 20 H 1.48498 * 109.47131 * 329.99839 * 17 15 13 21 21 C 1.46897 * 110.99757 * 170.00141 * 11 10 9 22 22 C 1.53003 * 109.47390 * 284.30621 * 21 11 10 23 23 C 1.52994 * 109.47118 * 175.49112 * 22 21 11 24 24 C 1.52998 * 109.47560 * 64.99877 * 23 22 21 25 25 C 1.53001 * 109.47172 * 185.00230 * 23 22 21 26 26 C 1.36277 * 120.66999 * 0.02562 * 9 8 7 27 27 C 1.38259 * 126.08847 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47053 * 270.02177 * 1 2 3 29 29 H 1.08999 * 109.47393 * 30.02866 * 1 2 3 30 30 H 1.09007 * 109.46920 * 150.02214 * 1 2 3 31 31 H 1.07996 * 118.69605 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.47056 * 30.02838 * 10 9 8 33 33 H 1.09003 * 109.46481 * 150.02310 * 10 9 8 34 34 H 1.09002 * 109.47244 * 285.30745 * 12 11 10 35 35 H 1.08996 * 109.47423 * 45.31020 * 12 11 10 36 36 H 0.96997 * 119.99444 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.47447 * 44.30522 * 21 11 10 38 38 H 1.09004 * 109.47425 * 164.30418 * 21 11 10 39 39 H 1.09001 * 109.47094 * 295.49022 * 22 21 11 40 40 H 1.08994 * 109.47297 * 55.48906 * 22 21 11 41 41 H 1.09005 * 109.47161 * 304.99637 * 23 22 21 42 42 H 1.09001 * 109.47220 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.46800 * 300.00073 * 24 23 22 44 44 H 1.08998 * 109.47449 * 59.99841 * 24 23 22 45 45 H 1.09001 * 109.47340 * 59.99394 * 25 23 22 46 46 H 1.09001 * 109.47266 * 180.02562 * 25 23 22 47 47 H 1.09008 * 109.47038 * 299.99507 * 25 23 22 48 48 H 1.07993 * 120.96103 * 179.72123 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0816 0.0000 4 1 1.9811 1.9993 -0.0004 5 7 3.6398 0.6936 -0.0006 6 6 3.7083 -0.6249 0.0002 7 7 4.7145 -1.5136 0.0005 8 6 4.4813 -2.8011 0.0008 9 6 3.1914 -3.3313 0.0013 10 6 2.9995 -4.8260 0.0011 11 7 2.9369 -5.3114 -1.3840 12 6 1.7383 -4.8049 -2.0657 13 6 1.8810 -5.0109 -3.5518 14 1 2.7556 -5.5063 -3.9468 15 6 0.8947 -4.5670 -4.4070 16 7 1.0190 -4.7472 -5.7039 17 14 -0.6178 -3.7098 -3.7238 18 1 -0.3680 -2.2477 -3.6520 19 1 -1.7784 -3.9705 -4.6126 20 1 -0.9092 -4.2296 -2.3636 21 6 2.9886 -6.7787 -1.4304 22 6 4.4220 -7.2471 -1.1719 23 6 4.4556 -8.7753 -1.1086 24 6 4.0822 -9.3509 -2.4761 25 6 5.8628 -9.2392 -0.7270 26 6 2.1028 -2.5114 0.0010 27 6 2.3214 -1.1173 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 5.3211 -3.4801 0.0007 32 1 3.8359 -5.2998 0.5148 33 1 2.0705 -5.0730 0.5150 34 1 0.8613 -5.3436 -1.7068 35 1 1.6228 -3.7417 -1.8557 36 1 0.3253 -4.4346 -6.3055 37 1 2.3288 -7.1899 -0.6665 38 1 2.6655 -7.1229 -2.4129 39 1 5.0680 -6.9027 -1.9795 40 1 4.7734 -6.8364 -0.2254 41 1 3.7431 -9.1238 -0.3608 42 1 4.1065 -10.4397 -2.4310 43 1 3.0796 -9.0205 -2.7478 44 1 4.7946 -9.0026 -3.2238 45 1 6.1289 -8.8291 0.2472 46 1 5.8869 -10.3280 -0.6823 47 1 6.5754 -8.8908 -1.4748 48 1 1.1019 -2.9169 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353423684.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:47 Heat of formation + Delta-G solvation = 92.080232 kcal Electronic energy + Delta-G solvation = -26791.727631 eV Core-core repulsion = 23268.812223 eV Total energy + Delta-G solvation = -3522.915408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42431 -38.61928 -37.25518 -35.48566 -33.37426 -32.49728 -31.47744 -30.98807 -29.08085 -28.20930 -26.95552 -26.57132 -24.83565 -24.30233 -22.41374 -21.53477 -20.33150 -19.63501 -19.47279 -17.90013 -17.15755 -16.73029 -15.57232 -15.46034 -15.33596 -14.95156 -14.61700 -14.31307 -14.01399 -13.77745 -13.37604 -13.25305 -13.12359 -12.98488 -12.75282 -12.53285 -12.40969 -12.32616 -12.11075 -11.93082 -11.84290 -11.42168 -11.14467 -11.02717 -10.90828 -10.72069 -10.57673 -10.39632 -10.27012 -10.18025 -9.92538 -9.72336 -9.29705 -8.91475 -8.83958 -8.56582 -7.74299 -7.34412 -6.05289 -4.00753 0.58137 1.78595 2.46896 2.54804 3.22023 3.27767 3.30107 4.02395 4.13343 4.29198 4.39076 4.70718 4.79354 4.96272 5.14680 5.17407 5.19710 5.21188 5.26538 5.27808 5.31253 5.38235 5.56591 5.63018 5.67481 5.78148 5.83322 5.88226 5.96638 6.01590 6.04343 6.09254 6.11287 6.24912 6.36526 6.40708 6.46114 6.51695 6.58200 6.72237 6.78079 6.83983 6.92747 6.98557 7.00439 7.55351 7.62426 7.91383 8.05306 8.26267 8.66657 9.05759 9.56841 11.08229 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.004835 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.564130 B = 5789.873309 C = 7879.034031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.128 3.872 3 N -0.418 5.418 4 H 0.443 0.557 5 N -0.300 5.300 6 C 0.274 3.726 7 N -0.484 5.484 8 C 0.223 3.777 9 C -0.162 4.162 10 C 0.098 3.902 11 N -0.522 5.522 12 C 0.158 3.842 13 C -0.501 4.501 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.867 3.133 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.062 3.938 22 C -0.108 4.108 23 C -0.095 4.095 24 C -0.149 4.149 25 C -0.145 4.145 26 C 0.018 3.982 27 C -0.253 4.253 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.164 0.836 32 H 0.078 0.922 33 H 0.032 0.968 34 H -0.015 1.015 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.018 0.982 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 1.656 14.637 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.013 4.013 3 N -0.120 5.120 4 H 0.287 0.713 5 N -0.132 5.132 6 C 0.012 3.988 7 N -0.197 5.197 8 C 0.038 3.962 9 C -0.167 4.167 10 C -0.030 4.030 11 N -0.246 5.246 12 C 0.032 3.968 13 C -0.540 4.540 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.539 5.539 17 Si 0.695 3.305 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.066 4.066 22 C -0.146 4.146 23 C -0.114 4.114 24 C -0.206 4.206 25 C -0.202 4.202 26 C -0.011 4.011 27 C -0.265 4.265 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.181 0.819 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.003 0.997 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.741 3.505 14.202 14.731 hybrid contribution -3.122 -0.255 0.422 3.161 sum -1.381 3.250 14.624 15.044 Atomic orbital electron populations 1.20610 0.86235 1.04983 1.03915 1.21199 0.94364 0.87395 0.98351 1.46285 1.04575 1.08557 1.52537 0.71265 1.77699 0.91852 1.10482 1.33146 1.21326 0.88901 0.91365 0.97198 1.67509 1.31847 1.01737 1.18558 1.22827 0.96040 0.90041 0.87274 1.20135 0.93784 0.96853 1.05894 1.20943 1.00289 0.89807 0.91977 1.61938 1.42667 1.08477 1.11500 1.20267 0.85989 0.95061 0.95513 1.21033 1.06620 1.37859 0.88472 0.90058 1.24885 0.97864 0.95855 0.94729 1.69890 1.34443 1.47490 1.02099 0.86967 0.83620 0.80541 0.79393 1.20252 1.21235 1.19204 1.22100 0.95070 0.87471 1.01973 1.21643 0.97952 0.93320 1.01693 1.21096 0.96663 0.96088 0.97600 1.21882 1.02469 0.99551 0.96730 1.21830 0.96980 1.00333 1.01059 1.20552 0.99152 0.89751 0.91662 1.20077 0.94658 0.94414 1.17356 0.89286 0.90293 0.88875 0.81892 0.90344 0.95015 0.99705 0.95377 0.92779 0.96337 0.89082 0.91189 0.92688 0.91887 0.93605 0.91886 0.92571 0.93063 0.93290 0.92705 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.44 36.01 0.38 -0.50 16 2 C 0.13 1.68 7.27 -81.71 -0.59 1.08 16 3 N -0.42 -5.28 7.17 33.83 0.24 -5.04 16 4 H 0.44 3.56 8.96 -182.73 -1.64 1.92 16 5 N -0.30 -5.22 12.69 31.94 0.41 -4.81 16 6 C 0.27 5.13 8.61 -156.49 -1.35 3.78 16 7 N -0.48 -9.07 10.45 -11.34 -0.12 -9.19 16 8 C 0.22 3.66 10.74 -17.52 -0.19 3.47 16 9 C -0.16 -2.67 4.92 -104.87 -0.52 -3.18 16 10 C 0.10 1.53 4.93 -4.98 -0.02 1.51 16 11 N -0.52 -10.08 4.38 -237.52 -1.04 -11.12 16 12 C 0.16 3.63 3.61 -4.98 -0.02 3.61 16 13 C -0.50 -13.86 8.91 -34.44 -0.31 -14.17 16 14 H 0.08 2.47 7.79 -52.49 -0.41 2.06 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 17 Si 0.87 20.77 27.42 -169.99 -4.66 16.11 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.00 6.61 56.52 0.37 -5.62 16 21 C 0.06 1.07 4.46 -3.82 -0.02 1.05 16 22 C -0.11 -1.55 4.85 -26.73 -0.13 -1.68 16 23 C -0.10 -1.19 2.92 -90.62 -0.26 -1.45 16 24 C -0.15 -1.97 8.95 37.16 0.33 -1.64 16 25 C -0.14 -1.55 9.19 37.16 0.34 -1.20 16 26 C 0.02 0.29 7.94 -39.20 -0.31 -0.02 16 27 C -0.25 -4.22 6.27 -105.17 -0.66 -4.88 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.08 1.03 6.51 -51.93 -0.34 0.69 16 33 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 34 H -0.01 -0.34 7.29 -51.93 -0.38 -0.72 16 35 H 0.03 0.65 4.48 -51.93 -0.23 0.42 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.02 0.30 8.00 -51.93 -0.42 -0.11 16 38 H 0.09 1.84 5.55 -51.93 -0.29 1.55 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.71 6.67 -51.93 -0.35 0.37 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.92 6.67 -51.93 -0.35 0.58 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 48 H 0.13 1.94 7.75 -52.49 -0.41 1.54 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -34.49 381.89 -11.10 -45.59 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -9.03 Total: 1.62 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.42 Total: -12.37 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.26 Total: -56.71 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.66 Total: 16.11 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.49 -11.10 -45.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353423684.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.668 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds