Wall clock time and date at job start Tue Mar 31 2020 11:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33848 * 126.09080 * 2 1 4 4 H 0.97003 * 125.00373 * 359.97438 * 3 2 1 5 5 N 1.39920 * 109.99260 * 180.02562 * 3 2 1 6 6 C 1.32034 * 109.07376 * 359.94779 * 5 3 2 7 7 N 1.34241 * 134.42640 * 180.02562 * 6 5 3 8 8 C 1.30843 * 121.18587 * 180.02562 * 7 6 5 9 9 C 1.39463 * 122.60985 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.66152 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47086 * 270.01902 * 10 9 8 12 12 C 1.46895 * 111.00124 * 293.95970 * 11 10 9 13 13 C 1.50705 * 109.46811 * 165.31180 * 12 11 10 14 14 H 1.08001 * 119.99889 * 2.36070 * 13 12 11 15 15 C 1.37879 * 119.99790 * 182.35428 * 13 12 11 16 16 N 1.31519 * 119.99820 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00032 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46991 * 89.99881 * 17 15 13 19 19 H 1.48500 * 109.47084 * 209.99585 * 17 15 13 20 20 H 1.48498 * 109.47131 * 329.99839 * 17 15 13 21 21 C 1.46897 * 110.99757 * 170.00141 * 11 10 9 22 22 C 1.53003 * 109.47390 * 284.30621 * 21 11 10 23 23 C 1.52994 * 109.47118 * 175.49112 * 22 21 11 24 24 C 1.52998 * 109.47560 * 64.99877 * 23 22 21 25 25 C 1.53001 * 109.47172 * 185.00230 * 23 22 21 26 26 C 1.36277 * 120.66999 * 0.02562 * 9 8 7 27 27 C 1.38259 * 126.08847 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47053 * 270.02177 * 1 2 3 29 29 H 1.08999 * 109.47393 * 30.02866 * 1 2 3 30 30 H 1.09007 * 109.46920 * 150.02214 * 1 2 3 31 31 H 1.07996 * 118.69605 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.47056 * 30.02838 * 10 9 8 33 33 H 1.09003 * 109.46481 * 150.02310 * 10 9 8 34 34 H 1.09002 * 109.47244 * 285.30745 * 12 11 10 35 35 H 1.08996 * 109.47423 * 45.31020 * 12 11 10 36 36 H 0.96997 * 119.99444 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.47447 * 44.30522 * 21 11 10 38 38 H 1.09004 * 109.47425 * 164.30418 * 21 11 10 39 39 H 1.09001 * 109.47094 * 295.49022 * 22 21 11 40 40 H 1.08994 * 109.47297 * 55.48906 * 22 21 11 41 41 H 1.09005 * 109.47161 * 304.99637 * 23 22 21 42 42 H 1.09001 * 109.47220 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.46800 * 300.00073 * 24 23 22 44 44 H 1.08998 * 109.47449 * 59.99841 * 24 23 22 45 45 H 1.09001 * 109.47340 * 59.99394 * 25 23 22 46 46 H 1.09001 * 109.47266 * 180.02562 * 25 23 22 47 47 H 1.09008 * 109.47038 * 299.99507 * 25 23 22 48 48 H 1.07993 * 120.96103 * 179.72123 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0816 0.0000 4 1 1.9811 1.9993 -0.0004 5 7 3.6398 0.6936 -0.0006 6 6 3.7083 -0.6249 0.0002 7 7 4.7145 -1.5136 0.0005 8 6 4.4813 -2.8011 0.0008 9 6 3.1914 -3.3313 0.0013 10 6 2.9995 -4.8260 0.0011 11 7 2.9369 -5.3114 -1.3840 12 6 1.7383 -4.8049 -2.0657 13 6 1.8810 -5.0109 -3.5518 14 1 2.7556 -5.5063 -3.9468 15 6 0.8947 -4.5670 -4.4070 16 7 1.0190 -4.7472 -5.7039 17 14 -0.6178 -3.7098 -3.7238 18 1 -0.3680 -2.2477 -3.6520 19 1 -1.7784 -3.9705 -4.6126 20 1 -0.9092 -4.2296 -2.3636 21 6 2.9886 -6.7787 -1.4304 22 6 4.4220 -7.2471 -1.1719 23 6 4.4556 -8.7753 -1.1086 24 6 4.0822 -9.3509 -2.4761 25 6 5.8628 -9.2392 -0.7270 26 6 2.1028 -2.5114 0.0010 27 6 2.3214 -1.1173 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 5.3211 -3.4801 0.0007 32 1 3.8359 -5.2998 0.5148 33 1 2.0705 -5.0730 0.5150 34 1 0.8613 -5.3436 -1.7068 35 1 1.6228 -3.7417 -1.8557 36 1 0.3253 -4.4346 -6.3055 37 1 2.3288 -7.1899 -0.6665 38 1 2.6655 -7.1229 -2.4129 39 1 5.0680 -6.9027 -1.9795 40 1 4.7734 -6.8364 -0.2254 41 1 3.7431 -9.1238 -0.3608 42 1 4.1065 -10.4397 -2.4310 43 1 3.0796 -9.0205 -2.7478 44 1 4.7946 -9.0026 -3.2238 45 1 6.1289 -8.8291 0.2472 46 1 5.8869 -10.3280 -0.6823 47 1 6.5754 -8.8908 -1.4748 48 1 1.1019 -2.9169 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353423684.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:46 Heat of formation + Delta-G solvation = 69.136626 kcal Electronic energy + Delta-G solvation = -26792.722540 eV Core-core repulsion = 23268.812223 eV Total energy + Delta-G solvation = -3523.910318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56572 -39.88745 -38.52485 -36.70778 -34.78955 -34.29606 -32.59351 -32.18183 -30.68819 -29.39101 -27.98617 -27.84926 -26.05932 -25.59982 -24.01071 -22.84953 -21.65829 -20.84417 -20.66642 -19.01870 -18.95807 -18.13950 -16.94791 -16.61603 -16.50188 -16.30058 -16.12150 -15.66847 -15.36298 -15.06259 -14.58463 -14.29572 -14.28990 -14.21674 -14.06478 -13.95609 -13.58515 -13.41202 -13.28324 -13.17499 -12.97074 -12.73669 -12.63324 -12.38171 -12.17156 -12.11697 -11.96773 -11.82221 -11.59840 -11.44636 -11.36775 -11.25611 -11.02803 -10.72007 -10.16442 -10.03434 -9.00094 -8.78315 -8.23109 -6.24423 -0.54001 0.55925 1.30232 1.31553 1.36393 1.45999 1.57234 2.37498 2.78205 2.96981 3.10910 3.29198 3.45110 3.76407 3.92959 4.04725 4.05246 4.09482 4.16291 4.24127 4.30583 4.43330 4.54244 4.63132 4.68042 4.71817 4.74353 4.84728 4.88760 4.90488 4.96357 5.00317 5.02362 5.07334 5.11534 5.19925 5.21789 5.31345 5.31958 5.39646 5.46459 5.61053 5.62410 5.66436 5.69267 6.08779 6.12245 6.37409 6.52027 6.75644 6.82699 7.03930 7.38007 8.94001 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.004835 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.564130 B = 5789.873309 C = 7879.034031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.154 3.846 3 N -0.400 5.400 4 H 0.462 0.538 5 N -0.340 5.340 6 C 0.245 3.755 7 N -0.519 5.519 8 C 0.218 3.782 9 C -0.180 4.180 10 C 0.105 3.895 11 N -0.540 5.540 12 C 0.171 3.829 13 C -0.505 4.505 14 H 0.032 0.968 15 C 0.000 4.000 16 N -0.953 5.953 17 Si 0.938 3.062 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.237 1.237 21 C 0.066 3.934 22 C -0.099 4.099 23 C -0.091 4.091 24 C -0.149 4.149 25 C -0.140 4.140 26 C 0.018 3.982 27 C -0.287 4.287 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.184 0.816 32 H 0.106 0.894 33 H 0.046 0.954 34 H -0.012 1.012 35 H 0.033 0.967 36 H 0.263 0.737 37 H 0.035 0.965 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 2.196 17.594 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.011 3.989 3 N -0.104 5.104 4 H 0.311 0.689 5 N -0.173 5.173 6 C -0.016 4.016 7 N -0.233 5.233 8 C 0.035 3.965 9 C -0.184 4.184 10 C -0.023 4.023 11 N -0.264 5.264 12 C 0.044 3.956 13 C -0.544 4.544 14 H 0.051 0.949 15 C -0.196 4.196 16 N -0.595 5.595 17 Si 0.761 3.239 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.160 1.160 21 C -0.062 4.062 22 C -0.136 4.136 23 C -0.110 4.110 24 C -0.206 4.206 25 C -0.198 4.198 26 C -0.010 4.010 27 C -0.298 4.298 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.201 0.799 32 H 0.124 0.876 33 H 0.064 0.936 34 H 0.005 0.995 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.212 4.050 17.192 17.663 hybrid contribution -2.488 -0.396 -0.536 2.576 sum -2.700 3.654 16.656 17.264 Atomic orbital electron populations 1.20874 0.82508 1.06140 1.06243 1.21881 0.96209 0.86148 0.94672 1.46278 1.03276 1.09761 1.51052 0.68894 1.77580 0.94436 1.10307 1.34964 1.21631 0.90098 0.91955 0.97922 1.67465 1.32899 1.02673 1.20225 1.23196 0.97052 0.89778 0.86444 1.20242 0.93882 0.97251 1.07068 1.20994 1.02149 0.89432 0.89706 1.61819 1.40895 1.09547 1.14141 1.19964 0.87636 0.95372 0.92592 1.21306 1.04860 1.36699 0.91512 0.94947 1.25903 1.01907 0.96901 0.94874 1.70082 1.35991 1.49460 1.03968 0.85831 0.78501 0.79589 0.79941 1.19000 1.21226 1.16008 1.22041 0.97314 0.86567 1.00265 1.21563 0.95370 0.94898 1.01814 1.21080 0.98377 0.94430 0.97119 1.21878 1.00687 1.00823 0.97259 1.21787 0.95241 1.01244 1.01496 1.20810 0.99809 0.89888 0.90527 1.20401 0.94485 0.95530 1.19420 0.86165 0.87410 0.89355 0.79873 0.87605 0.93561 0.99457 0.94939 0.92834 0.94670 0.93082 0.93508 0.90438 0.90602 0.91670 0.94216 0.93893 0.91689 0.91957 0.93350 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.44 71.24 0.74 -0.53 16 2 C 0.15 3.59 7.27 42.26 0.31 3.89 16 3 N -0.40 -9.26 7.17 -46.88 -0.34 -9.60 16 4 H 0.46 6.17 8.96 -213.43 -1.91 4.25 16 5 N -0.34 -11.71 12.69 -52.87 -0.67 -12.39 16 6 C 0.25 9.17 8.61 136.86 1.18 10.35 16 7 N -0.52 -19.72 10.45 -189.80 -1.98 -21.71 16 8 C 0.22 7.09 10.74 85.14 0.91 8.01 16 9 C -0.18 -5.66 4.92 -20.03 -0.10 -5.76 16 10 C 0.10 3.03 4.93 85.56 0.42 3.46 16 11 N -0.54 -20.57 4.38 -905.38 -3.97 -24.54 16 12 C 0.17 7.79 3.61 85.56 0.31 8.10 16 13 C -0.51 -28.94 8.91 25.60 0.23 -28.71 16 14 H 0.03 2.11 7.79 -2.91 -0.02 2.08 16 15 C 0.00 0.01 5.47 84.65 0.46 0.48 16 16 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 17 Si 0.94 42.34 27.42 68.60 1.88 44.22 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.24 -9.46 6.61 99.48 0.66 -8.80 16 21 C 0.07 2.28 4.46 86.30 0.38 2.66 16 22 C -0.10 -2.76 4.85 30.59 0.15 -2.61 16 23 C -0.09 -2.14 2.92 -10.80 -0.03 -2.17 16 24 C -0.15 -4.00 8.95 71.98 0.64 -3.35 16 25 C -0.14 -2.69 9.19 71.98 0.66 -2.03 16 26 C 0.02 0.57 7.94 22.52 0.18 0.75 16 27 C -0.29 -9.10 6.27 -20.22 -0.13 -9.23 16 28 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.18 4.83 8.06 -2.91 -0.02 4.80 16 32 H 0.11 2.46 6.51 -2.39 -0.02 2.44 16 33 H 0.05 1.23 8.05 -2.39 -0.02 1.21 16 34 H -0.01 -0.54 7.29 -2.39 -0.02 -0.56 16 35 H 0.03 1.46 4.48 -2.39 -0.01 1.45 16 36 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.04 1.09 8.00 -2.39 -0.02 1.07 16 38 H 0.05 2.17 5.55 -2.39 -0.01 2.16 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.82 6.67 -2.39 -0.02 1.80 16 41 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.04 1.23 6.67 -2.39 -0.02 1.21 16 44 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.14 3.88 7.75 -2.91 -0.02 3.86 16 Total: -1.00 -80.44 381.89 0.55 -79.89 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -1.00 Total: 20.74 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 6.33 Total: -16.71 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -6.66 Total: -128.14 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Total: -80.44 0.55 -79.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353423684.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.028 kcal (2) G-P(sol) polarization free energy of solvation -80.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds