Wall clock time and date at job start Tue Mar 31 2020 11:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33856 * 126.09388 * 2 1 4 4 H 0.97006 * 125.00288 * 359.97438 * 3 2 1 5 5 N 1.39911 * 109.99811 * 180.02562 * 3 2 1 6 6 C 1.32040 * 109.07477 * 359.94809 * 5 3 2 7 7 N 1.34233 * 134.43542 * 180.02562 * 6 5 3 8 8 C 1.30846 * 121.18977 * 180.02562 * 7 6 5 9 9 C 1.39453 * 122.61149 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.66698 * 179.97438 * 9 8 7 11 11 N 1.46903 * 109.47115 * 263.81112 * 10 9 8 12 12 C 1.46902 * 110.99892 * 191.11196 * 11 10 9 13 13 C 1.50696 * 109.47094 * 169.92981 * 12 11 10 14 14 H 1.08000 * 120.00154 * 2.15041 * 13 12 11 15 15 C 1.37882 * 119.99494 * 182.15344 * 13 12 11 16 16 N 1.31509 * 120.00343 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99536 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47172 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47316 * 119.99996 * 17 15 13 20 20 H 1.48500 * 109.46662 * 239.99746 * 17 15 13 21 21 C 1.46895 * 111.00314 * 67.15766 * 11 10 9 22 22 C 1.52995 * 109.47494 * 80.60097 * 21 11 10 23 23 C 1.53001 * 109.47299 * 77.79980 * 22 21 11 24 24 C 1.52996 * 109.47453 * 197.80689 * 22 21 11 25 25 C 1.53000 * 109.46965 * 317.80356 * 22 21 11 26 26 C 1.36282 * 120.66755 * 0.02562 * 9 8 7 27 27 C 1.38268 * 126.09151 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46922 * 270.02724 * 1 2 3 29 29 H 1.09001 * 109.47440 * 30.02429 * 1 2 3 30 30 H 1.09003 * 109.47271 * 150.02804 * 1 2 3 31 31 H 1.07997 * 118.69383 * 179.97438 * 8 7 6 32 32 H 1.08999 * 109.46852 * 23.80759 * 10 9 8 33 33 H 1.08996 * 109.47176 * 143.80371 * 10 9 8 34 34 H 1.09001 * 109.46826 * 289.93078 * 12 11 10 35 35 H 1.09001 * 109.46974 * 49.92708 * 12 11 10 36 36 H 0.96997 * 120.00173 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.47238 * 200.60138 * 21 11 10 38 38 H 1.09001 * 109.46864 * 320.59779 * 21 11 10 39 39 H 1.08997 * 109.46608 * 22.24790 * 23 22 21 40 40 H 1.09000 * 109.46601 * 142.24367 * 23 22 21 41 41 H 1.08997 * 109.47491 * 262.24701 * 23 22 21 42 42 H 1.09003 * 109.47260 * 59.99482 * 24 22 21 43 43 H 1.08999 * 109.47608 * 179.97438 * 24 22 21 44 44 H 1.09001 * 109.46924 * 299.99866 * 24 22 21 45 45 H 1.09001 * 109.47229 * 62.99532 * 25 22 21 46 46 H 1.08997 * 109.47295 * 183.00017 * 25 22 21 47 47 H 1.09003 * 109.47557 * 302.99710 * 25 22 21 48 48 H 1.07997 * 120.95722 * 179.72569 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0816 0.0000 4 1 1.9812 1.9994 -0.0004 5 7 3.6398 0.6937 -0.0006 6 6 3.7084 -0.6249 0.0002 7 7 4.7144 -1.5136 0.0005 8 6 4.4812 -2.8011 0.0008 9 6 3.1914 -3.3313 0.0013 10 6 2.9993 -4.8260 0.0010 11 7 2.7881 -5.2923 -1.3759 12 6 2.3383 -6.6906 -1.3950 13 6 1.8972 -7.0574 -2.7885 14 1 1.9786 -6.3361 -3.5881 15 6 1.3897 -8.3140 -3.0425 16 7 1.2910 -9.1925 -2.0689 17 14 0.8435 -8.7689 -4.7701 18 1 1.0571 -7.6128 -5.6773 19 1 1.6365 -9.9289 -5.2506 20 1 -0.5977 -9.1265 -4.7554 21 6 4.0035 -5.1192 -2.1826 22 6 4.9707 -6.2708 -1.9014 23 6 4.5080 -7.5206 -2.6530 24 6 6.3746 -5.8840 -2.3706 25 6 4.9967 -6.5596 -0.3991 26 6 2.1028 -2.5113 0.0010 27 6 2.3214 -1.1173 0.0005 28 1 -0.3633 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 5.3210 -3.4802 0.0007 32 1 3.8858 -5.3062 0.4153 33 1 2.1308 -5.0808 0.6082 34 1 3.1589 -7.3404 -1.0908 35 1 1.5031 -6.8131 -0.7054 36 1 0.9335 -10.0764 -2.2476 37 1 3.7402 -5.1161 -3.2404 38 1 4.4796 -4.1734 -1.9239 39 1 3.8732 -7.2274 -3.4891 40 1 5.3768 -8.0612 -3.0284 41 1 3.9444 -8.1634 -1.9768 42 1 6.7042 -4.9936 -1.8351 43 1 7.0638 -6.7043 -2.1699 44 1 6.3561 -5.6783 -3.4409 45 1 4.0087 -6.8866 -0.0748 46 1 5.7250 -7.3438 -0.1924 47 1 5.2749 -5.6542 0.1403 48 1 1.1019 -2.9169 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353436037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:50 Heat of formation + Delta-G solvation = 147.191259 kcal Electronic energy + Delta-G solvation = -27620.912017 eV Core-core repulsion = 24100.386402 eV Total energy + Delta-G solvation = -3520.525615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52395 -39.61142 -37.87926 -34.15258 -33.19617 -32.66106 -31.42736 -30.82574 -28.37499 -27.69397 -27.03220 -25.92864 -25.18590 -24.82716 -23.58105 -21.53184 -20.29063 -19.90035 -18.26925 -17.94027 -17.10209 -16.37487 -15.58083 -15.45672 -15.32590 -14.88040 -14.79284 -14.18806 -13.82434 -13.53185 -13.39045 -13.31304 -13.05708 -12.93571 -12.63144 -12.41023 -12.27096 -11.82344 -11.59182 -11.25156 -11.19682 -11.01535 -10.99439 -10.79415 -10.76832 -10.63652 -10.43160 -10.33643 -10.13492 -9.78447 -9.63242 -9.32475 -9.10278 -8.95468 -8.93080 -8.34265 -7.77860 -6.87180 -5.99788 -3.92850 0.50311 1.69060 2.41555 2.44512 3.31007 3.40023 3.43690 3.96843 4.02456 4.20978 4.45836 4.63611 4.88579 5.09376 5.11123 5.15383 5.31801 5.33961 5.36517 5.48670 5.49965 5.52868 5.60629 5.70618 5.75801 6.02056 6.05542 6.09197 6.21954 6.22864 6.31412 6.36165 6.41931 6.54390 6.65578 6.68750 6.80766 6.83263 6.88112 6.90829 7.03601 7.19705 7.34156 7.45705 7.51027 7.84332 7.85434 8.14320 8.15802 8.29166 8.61747 9.06992 9.63491 11.10507 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.003965 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.203841 B = 7059.455923 C = 8176.875033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.127 3.873 3 N -0.419 5.419 4 H 0.442 0.558 5 N -0.302 5.302 6 C 0.269 3.731 7 N -0.485 5.485 8 C 0.207 3.793 9 C -0.162 4.162 10 C 0.061 3.939 11 N -0.526 5.526 12 C 0.157 3.843 13 C -0.485 4.485 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.885 3.115 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.077 3.923 22 C -0.095 4.095 23 C -0.144 4.144 24 C -0.135 4.135 25 C -0.164 4.164 26 C 0.026 3.974 27 C -0.253 4.253 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.159 0.841 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.023 0.977 36 H 0.259 0.741 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.014 0.986 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.049 0.951 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 14.066 5.772 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.015 4.015 3 N -0.121 5.121 4 H 0.287 0.713 5 N -0.133 5.133 6 C 0.007 3.993 7 N -0.197 5.197 8 C 0.023 3.977 9 C -0.167 4.167 10 C -0.067 4.067 11 N -0.249 5.249 12 C 0.033 3.967 13 C -0.523 4.523 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.713 3.287 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.052 4.052 22 C -0.096 4.096 23 C -0.200 4.200 24 C -0.193 4.193 25 C -0.220 4.220 26 C -0.003 4.003 27 C -0.265 4.265 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.176 0.824 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.033 0.967 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.731 15.802 5.590 16.851 hybrid contribution -1.183 -1.333 -0.723 1.923 sum 0.549 14.469 4.867 15.275 Atomic orbital electron populations 1.20598 0.86049 1.04867 1.04045 1.21239 0.94425 0.87313 0.98481 1.46309 1.04575 1.08613 1.52567 0.71294 1.77709 0.91936 1.10525 1.33170 1.21328 0.89057 0.91356 0.97539 1.67495 1.32011 1.01687 1.18521 1.22938 0.96331 0.90166 0.88298 1.20357 0.93228 0.97808 1.05284 1.21745 1.02623 0.88897 0.93430 1.62401 1.29496 1.25387 1.07652 1.20684 0.96077 0.82089 0.97860 1.21035 1.39551 0.97300 0.94456 0.92191 1.24839 0.96464 0.96588 0.96558 1.69927 1.46844 1.05801 1.31258 0.86642 0.78298 0.78407 0.85339 1.19815 1.21218 1.21267 1.22173 0.88989 0.95002 0.99046 1.21137 0.94895 0.98464 0.95142 1.22581 0.98747 0.95895 1.02825 1.21879 0.96539 1.00158 1.00710 1.22756 1.03233 0.99853 0.96203 1.20554 0.99622 0.89041 0.91071 1.20179 0.94420 0.94692 1.17223 0.89353 0.90495 0.88583 0.82429 0.90982 0.90876 0.94126 0.95914 0.93156 0.91168 0.93267 0.89632 0.96679 0.89698 0.93659 0.93453 0.93104 0.89507 0.93736 0.93202 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.44 36.00 0.38 -0.23 16 2 C 0.13 1.35 7.28 -81.70 -0.59 0.76 16 3 N -0.42 -4.45 7.17 33.83 0.24 -4.21 16 4 H 0.44 2.75 8.96 -182.73 -1.64 1.11 16 5 N -0.30 -4.70 12.69 31.94 0.41 -4.30 16 6 C 0.27 4.52 8.61 -156.49 -1.35 3.18 16 7 N -0.48 -8.32 10.45 -11.34 -0.12 -8.43 16 8 C 0.21 3.14 9.10 -17.52 -0.16 2.98 16 9 C -0.16 -2.45 4.79 -104.87 -0.50 -2.95 16 10 C 0.06 0.98 4.49 -4.97 -0.02 0.96 16 11 N -0.53 -10.10 4.68 -237.52 -1.11 -11.21 16 12 C 0.16 3.57 3.65 -4.98 -0.02 3.55 16 13 C -0.48 -12.22 5.23 -34.44 -0.18 -12.40 16 14 H 0.06 1.56 7.02 -52.49 -0.37 1.19 16 15 C 0.06 1.46 5.20 -17.82 -0.09 1.37 16 16 N -0.90 -24.65 13.29 55.43 0.74 -23.92 16 17 Si 0.88 20.72 29.54 -169.99 -5.02 15.69 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.08 1.39 4.59 -3.83 -0.02 1.37 16 22 C -0.09 -1.62 0.77 -154.51 -0.12 -1.74 16 23 C -0.14 -2.90 7.23 37.16 0.27 -2.63 16 24 C -0.13 -2.00 8.17 37.16 0.30 -1.69 16 25 C -0.16 -2.62 6.33 37.16 0.24 -2.39 16 26 C 0.03 0.38 9.84 -39.20 -0.39 -0.01 16 27 C -0.25 -3.64 6.27 -105.17 -0.66 -4.30 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.16 2.08 7.07 -52.49 -0.37 1.71 16 32 H 0.07 1.09 3.12 -51.93 -0.16 0.93 16 33 H 0.07 1.17 7.88 -51.93 -0.41 0.77 16 34 H 0.04 0.95 2.10 -51.93 -0.11 0.84 16 35 H 0.02 0.58 7.92 -51.93 -0.41 0.16 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.07 1.41 6.89 -51.93 -0.36 1.05 16 38 H 0.05 0.83 5.35 -51.93 -0.28 0.55 16 39 H 0.09 1.90 5.10 -51.93 -0.26 1.63 16 40 H 0.01 0.27 7.72 -51.93 -0.40 -0.13 16 41 H 0.08 1.95 5.15 -51.93 -0.27 1.68 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.67 8.12 -51.93 -0.42 0.24 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.56 3.81 -51.93 -0.20 1.36 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.69 5.68 -51.93 -0.29 0.40 16 48 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -31.16 358.22 -10.43 -41.59 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.05 Total: 3.57 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.91 Total: -14.18 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.15 Total: -52.07 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.16 -10.43 -41.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353436037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.780 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds