Wall clock time and date at job start Tue Mar 31 2020 11:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33856 * 126.09388 * 2 1 4 4 H 0.97006 * 125.00288 * 359.97438 * 3 2 1 5 5 N 1.39911 * 109.99811 * 180.02562 * 3 2 1 6 6 C 1.32040 * 109.07477 * 359.94809 * 5 3 2 7 7 N 1.34233 * 134.43542 * 180.02562 * 6 5 3 8 8 C 1.30846 * 121.18977 * 180.02562 * 7 6 5 9 9 C 1.39453 * 122.61149 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.66698 * 179.97438 * 9 8 7 11 11 N 1.46903 * 109.47115 * 263.81112 * 10 9 8 12 12 C 1.46902 * 110.99892 * 191.11196 * 11 10 9 13 13 C 1.50696 * 109.47094 * 169.92981 * 12 11 10 14 14 H 1.08000 * 120.00154 * 2.15041 * 13 12 11 15 15 C 1.37882 * 119.99494 * 182.15344 * 13 12 11 16 16 N 1.31509 * 120.00343 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99536 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47172 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47316 * 119.99996 * 17 15 13 20 20 H 1.48500 * 109.46662 * 239.99746 * 17 15 13 21 21 C 1.46895 * 111.00314 * 67.15766 * 11 10 9 22 22 C 1.52995 * 109.47494 * 80.60097 * 21 11 10 23 23 C 1.53001 * 109.47299 * 77.79980 * 22 21 11 24 24 C 1.52996 * 109.47453 * 197.80689 * 22 21 11 25 25 C 1.53000 * 109.46965 * 317.80356 * 22 21 11 26 26 C 1.36282 * 120.66755 * 0.02562 * 9 8 7 27 27 C 1.38268 * 126.09151 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46922 * 270.02724 * 1 2 3 29 29 H 1.09001 * 109.47440 * 30.02429 * 1 2 3 30 30 H 1.09003 * 109.47271 * 150.02804 * 1 2 3 31 31 H 1.07997 * 118.69383 * 179.97438 * 8 7 6 32 32 H 1.08999 * 109.46852 * 23.80759 * 10 9 8 33 33 H 1.08996 * 109.47176 * 143.80371 * 10 9 8 34 34 H 1.09001 * 109.46826 * 289.93078 * 12 11 10 35 35 H 1.09001 * 109.46974 * 49.92708 * 12 11 10 36 36 H 0.96997 * 120.00173 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.47238 * 200.60138 * 21 11 10 38 38 H 1.09001 * 109.46864 * 320.59779 * 21 11 10 39 39 H 1.08997 * 109.46608 * 22.24790 * 23 22 21 40 40 H 1.09000 * 109.46601 * 142.24367 * 23 22 21 41 41 H 1.08997 * 109.47491 * 262.24701 * 23 22 21 42 42 H 1.09003 * 109.47260 * 59.99482 * 24 22 21 43 43 H 1.08999 * 109.47608 * 179.97438 * 24 22 21 44 44 H 1.09001 * 109.46924 * 299.99866 * 24 22 21 45 45 H 1.09001 * 109.47229 * 62.99532 * 25 22 21 46 46 H 1.08997 * 109.47295 * 183.00017 * 25 22 21 47 47 H 1.09003 * 109.47557 * 302.99710 * 25 22 21 48 48 H 1.07997 * 120.95722 * 179.72569 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0816 0.0000 4 1 1.9812 1.9994 -0.0004 5 7 3.6398 0.6937 -0.0006 6 6 3.7084 -0.6249 0.0002 7 7 4.7144 -1.5136 0.0005 8 6 4.4812 -2.8011 0.0008 9 6 3.1914 -3.3313 0.0013 10 6 2.9993 -4.8260 0.0010 11 7 2.7881 -5.2923 -1.3759 12 6 2.3383 -6.6906 -1.3950 13 6 1.8972 -7.0574 -2.7885 14 1 1.9786 -6.3361 -3.5881 15 6 1.3897 -8.3140 -3.0425 16 7 1.2910 -9.1925 -2.0689 17 14 0.8435 -8.7689 -4.7701 18 1 1.0571 -7.6128 -5.6773 19 1 1.6365 -9.9289 -5.2506 20 1 -0.5977 -9.1265 -4.7554 21 6 4.0035 -5.1192 -2.1826 22 6 4.9707 -6.2708 -1.9014 23 6 4.5080 -7.5206 -2.6530 24 6 6.3746 -5.8840 -2.3706 25 6 4.9967 -6.5596 -0.3991 26 6 2.1028 -2.5113 0.0010 27 6 2.3214 -1.1173 0.0005 28 1 -0.3633 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 5.3210 -3.4802 0.0007 32 1 3.8858 -5.3062 0.4153 33 1 2.1308 -5.0808 0.6082 34 1 3.1589 -7.3404 -1.0908 35 1 1.5031 -6.8131 -0.7054 36 1 0.9335 -10.0764 -2.2476 37 1 3.7402 -5.1161 -3.2404 38 1 4.4796 -4.1734 -1.9239 39 1 3.8732 -7.2274 -3.4891 40 1 5.3768 -8.0612 -3.0284 41 1 3.9444 -8.1634 -1.9768 42 1 6.7042 -4.9936 -1.8351 43 1 7.0638 -6.7043 -2.1699 44 1 6.3561 -5.6783 -3.4409 45 1 4.0087 -6.8866 -0.0748 46 1 5.7250 -7.3438 -0.1924 47 1 5.2749 -5.6542 0.1403 48 1 1.1019 -2.9169 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353436037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:49 Heat of formation + Delta-G solvation = 127.163451 kcal Electronic energy + Delta-G solvation = -27621.780488 eV Core-core repulsion = 24100.386402 eV Total energy + Delta-G solvation = -3521.394086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54832 -41.02122 -39.03907 -35.40988 -34.89458 -33.99391 -32.46761 -32.02447 -29.80394 -29.09539 -28.14259 -27.32938 -26.67569 -25.88264 -25.15173 -22.88594 -21.68325 -20.96383 -19.67784 -18.98223 -18.32815 -18.05906 -16.91380 -16.62589 -16.47746 -16.33684 -16.16780 -15.86631 -15.11144 -14.87240 -14.43738 -14.23950 -14.14000 -14.09413 -14.00419 -13.47750 -13.24370 -13.12274 -13.01571 -12.88149 -12.68459 -12.53338 -12.45365 -12.29425 -12.23031 -12.14437 -11.86461 -11.82196 -11.47538 -11.36764 -11.18462 -10.95574 -10.83935 -10.35615 -10.11288 -10.00841 -8.87212 -8.42645 -8.00976 -5.98752 -0.49754 0.57881 1.36841 1.42008 1.46658 1.55251 1.60478 2.50078 2.84821 2.97589 3.31341 3.34676 3.69174 3.82041 3.97408 4.07854 4.10782 4.14466 4.20932 4.30818 4.42212 4.46387 4.68462 4.71379 4.80793 4.83861 4.85382 4.91823 4.94559 5.03578 5.08500 5.10553 5.22344 5.24356 5.27851 5.31847 5.35792 5.51773 5.53634 5.57195 5.63909 5.69363 5.78362 5.90227 6.10946 6.16205 6.31779 6.40891 6.61682 6.90143 7.03798 7.08754 7.60523 9.07736 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.003965 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.203841 B = 7059.455923 C = 8176.875033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.159 3.841 3 N -0.401 5.401 4 H 0.462 0.538 5 N -0.342 5.342 6 C 0.243 3.757 7 N -0.515 5.515 8 C 0.207 3.793 9 C -0.179 4.179 10 C 0.070 3.930 11 N -0.536 5.536 12 C 0.170 3.830 13 C -0.480 4.480 14 H 0.048 0.952 15 C 0.015 3.985 16 N -0.927 5.927 17 Si 0.935 3.065 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.286 1.286 21 C 0.083 3.917 22 C -0.092 4.092 23 C -0.134 4.134 24 C -0.130 4.130 25 C -0.159 4.159 26 C 0.035 3.965 27 C -0.284 4.284 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.174 0.826 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.044 0.956 35 H -0.008 1.008 36 H 0.258 0.742 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.075 0.925 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 15.882 5.968 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.016 3.984 3 N -0.104 5.104 4 H 0.311 0.689 5 N -0.175 5.175 6 C -0.018 4.018 7 N -0.228 5.228 8 C 0.024 3.976 9 C -0.184 4.184 10 C -0.057 4.057 11 N -0.259 5.259 12 C 0.045 3.955 13 C -0.519 4.519 14 H 0.066 0.934 15 C -0.183 4.183 16 N -0.570 5.570 17 Si 0.762 3.238 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.213 1.213 21 C -0.046 4.046 22 C -0.093 4.093 23 C -0.191 4.191 24 C -0.188 4.188 25 C -0.215 4.215 26 C 0.006 3.994 27 C -0.295 4.295 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.191 0.809 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.010 0.990 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.390 17.656 5.781 18.630 hybrid contribution -1.184 -1.743 -0.766 2.242 sum 0.206 15.913 5.015 16.686 Atomic orbital electron populations 1.20853 0.82269 1.06433 1.05932 1.21908 0.96230 0.85954 0.94327 1.46310 1.03275 1.09837 1.50989 0.68921 1.77603 0.94532 1.10299 1.35019 1.21606 0.90164 0.91912 0.98140 1.67449 1.32971 1.02372 1.20052 1.23112 0.96778 0.89945 0.87750 1.20193 0.93742 0.96899 1.07533 1.21659 1.02957 0.89737 0.91367 1.62228 1.30670 1.23029 1.09971 1.20407 0.95087 0.84371 0.95603 1.21203 1.38528 0.96835 0.95285 0.93397 1.25391 0.96958 0.96751 0.99176 1.70021 1.48171 1.06033 1.32726 0.85850 0.77721 0.78021 0.82163 1.19585 1.21103 1.21252 1.22080 0.88832 0.96238 0.97432 1.21078 0.96120 0.96456 0.95682 1.22386 0.98306 0.96922 1.01475 1.21821 0.94762 1.01348 1.00855 1.22650 1.02184 1.01302 0.95369 1.20755 0.99997 0.89333 0.89284 1.20422 0.94272 0.95508 1.19345 0.87029 0.87379 0.88555 0.80873 0.89842 0.91327 0.93869 0.99007 0.93336 0.93650 0.91583 0.92186 0.95566 0.92737 0.91755 0.92474 0.93211 0.91795 0.92869 0.90650 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.44 71.23 0.74 -0.05 16 2 C 0.16 2.96 7.28 42.26 0.31 3.26 16 3 N -0.40 -7.57 7.17 -46.87 -0.34 -7.90 16 4 H 0.46 4.37 8.96 -213.43 -1.91 2.45 16 5 N -0.34 -10.36 12.69 -52.87 -0.67 -11.03 16 6 C 0.24 8.04 8.61 136.86 1.18 9.22 16 7 N -0.51 -17.51 10.45 -189.80 -1.98 -19.50 16 8 C 0.21 6.09 9.10 85.13 0.77 6.87 16 9 C -0.18 -5.27 4.79 -20.03 -0.10 -5.36 16 10 C 0.07 2.22 4.49 85.56 0.38 2.61 16 11 N -0.54 -20.69 4.68 -905.38 -4.24 -24.93 16 12 C 0.17 7.96 3.65 85.56 0.31 8.27 16 13 C -0.48 -24.80 5.23 25.60 0.13 -24.67 16 14 H 0.05 2.56 7.02 -2.91 -0.02 2.54 16 15 C 0.01 0.78 5.20 84.66 0.44 1.22 16 16 N -0.93 -52.14 13.29 21.45 0.28 -51.86 16 17 Si 0.93 43.12 29.54 68.60 2.03 45.14 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 C 0.08 2.97 4.59 86.30 0.40 3.37 16 22 C -0.09 -3.06 0.77 -52.18 -0.04 -3.10 16 23 C -0.13 -5.45 7.23 71.98 0.52 -4.93 16 24 C -0.13 -3.56 8.17 71.98 0.59 -2.98 16 25 C -0.16 -4.87 6.33 71.98 0.46 -4.42 16 26 C 0.04 0.97 9.84 22.52 0.22 1.19 16 27 C -0.28 -7.74 6.27 -20.22 -0.13 -7.87 16 28 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.17 4.28 7.07 -2.91 -0.02 4.26 16 32 H 0.08 2.44 3.12 -2.39 -0.01 2.43 16 33 H 0.07 2.21 7.88 -2.39 -0.02 2.19 16 34 H 0.04 2.06 2.10 -2.39 -0.01 2.06 16 35 H -0.01 -0.43 7.92 -2.39 -0.02 -0.45 16 36 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.05 1.84 6.89 -2.39 -0.02 1.83 16 38 H 0.07 2.16 5.35 -2.39 -0.01 2.14 16 39 H 0.06 2.72 5.10 -2.39 -0.01 2.71 16 40 H 0.03 0.96 7.72 -2.39 -0.02 0.94 16 41 H 0.05 2.55 5.15 -2.39 -0.01 2.54 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 44 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 2.29 3.81 -2.39 -0.01 2.28 16 46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.08 1.92 5.68 -2.39 -0.01 1.91 16 48 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -70.04 358.22 0.37 -69.67 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.91 Total: 17.78 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 6.19 Total: -17.37 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -6.95 Total: -115.22 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -70.04 0.37 -69.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353436037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.835 kcal (2) G-P(sol) polarization free energy of solvation -70.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds