Wall clock time and date at job start Tue Mar 31 2020 12:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00283 * 2 1 4 4 C 1.38214 * 119.99957 * 180.25550 * 3 2 1 5 5 C 1.38253 * 119.99978 * 359.51084 * 4 3 2 6 6 C 1.38213 * 120.00331 * 0.44451 * 5 4 3 7 7 C 1.38214 * 119.99908 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99899 * 359.97438 * 7 2 1 9 9 N 1.46899 * 109.47020 * 284.68881 * 8 7 2 10 10 C 1.47915 * 110.99937 * 292.20127 * 9 8 7 11 11 C 1.50802 * 108.49819 * 153.78621 * 10 9 8 12 12 C 1.53698 * 112.09979 * 92.55000 * 11 10 9 13 13 N 1.48069 * 112.46974 * 318.55707 * 12 11 10 14 14 C 1.46901 * 110.99935 * 192.19930 * 13 12 11 15 15 C 1.52998 * 109.46898 * 297.68408 * 14 13 12 16 16 C 1.53004 * 109.47416 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47455 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99518 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99963 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99821 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99927 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46869 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46934 * 119.99883 * 21 19 17 24 24 H 1.48494 * 109.47015 * 240.00113 * 21 19 17 25 25 C 1.44577 * 113.84954 * 318.30986 * 13 12 11 26 26 C 1.40010 * 111.00346 * 164.22940 * 9 8 7 27 27 H 1.09000 * 109.47422 * 95.26316 * 1 2 3 28 28 H 1.09001 * 109.47423 * 215.26304 * 1 2 3 29 29 H 1.09002 * 109.46928 * 335.26701 * 1 2 3 30 30 H 1.07997 * 119.99782 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.99962 * 179.72400 * 4 3 2 32 32 H 1.08003 * 120.00245 * 180.27577 * 5 4 3 33 33 H 1.08000 * 120.00494 * 179.83707 * 6 5 4 34 34 H 1.08994 * 109.47312 * 44.68986 * 8 7 2 35 35 H 1.08998 * 109.47342 * 164.69168 * 8 7 2 36 36 H 1.08997 * 109.63234 * 273.49322 * 10 9 8 37 37 H 1.08995 * 109.63049 * 34.08667 * 10 9 8 38 38 H 1.08999 * 108.95971 * 331.87677 * 11 10 9 39 39 H 1.08994 * 108.88901 * 213.17581 * 11 10 9 40 40 H 1.08997 * 108.88697 * 197.78003 * 12 11 10 41 41 H 1.09006 * 108.88199 * 79.32185 * 12 11 10 42 42 H 1.09002 * 109.47472 * 57.68055 * 14 13 12 43 43 H 1.09000 * 109.47386 * 177.68831 * 14 13 12 44 44 H 1.09008 * 109.47430 * 299.99981 * 15 14 13 45 45 H 1.09002 * 109.47488 * 60.00000 * 15 14 13 46 46 H 1.08997 * 109.47324 * 300.00597 * 16 15 14 47 47 H 1.09002 * 109.46717 * 59.99620 * 16 15 14 48 48 H 0.97004 * 119.99574 * 180.02562 * 20 19 17 49 49 H 1.08994 * 109.58014 * 334.42652 * 25 13 12 50 50 H 1.09007 * 109.67586 * 214.09971 * 25 13 12 51 51 H 1.08999 * 108.96084 * 308.77196 * 26 9 8 52 52 H 1.09001 * 108.95445 * 67.50968 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0053 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 7 0.8960 -2.7496 1.3418 10 6 1.9771 -3.0089 2.3174 11 6 1.4868 -2.6202 3.6895 12 6 0.8602 -3.8077 4.4375 13 7 0.0099 -4.6442 3.5601 14 6 -0.7952 -5.5857 4.3496 15 6 0.1316 -6.5385 5.1073 16 6 -0.7069 -7.5189 5.9301 17 6 0.2060 -8.4578 6.6759 18 1 1.2771 -8.3643 6.5736 19 6 -0.3263 -9.4360 7.4888 20 7 -1.6305 -9.5500 7.6128 21 14 0.8053 -10.5994 8.4138 22 1 2.2188 -10.2636 8.1065 23 1 0.5704 -10.4617 9.8737 24 1 0.5261 -11.9970 7.9970 25 6 -0.8220 -3.8836 2.6548 26 6 -0.0901 -3.7429 1.3049 27 1 -0.3634 -0.0943 -1.0233 28 1 -0.3634 -0.8391 0.5933 29 1 -0.3633 0.9334 0.4300 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1325 -0.0098 32 1 5.3517 -0.0002 -0.0001 33 1 4.1206 -2.1324 0.0016 34 1 0.6298 -2.4520 -0.7207 35 1 2.1210 -3.3126 -0.2693 36 1 2.2338 -4.0682 2.3067 37 1 2.8534 -2.4142 2.0596 38 1 0.7409 -1.8319 3.5888 39 1 2.3273 -2.2399 4.2699 40 1 0.2527 -3.4268 5.2584 41 1 1.6580 -4.4261 4.8490 42 1 -1.4077 -5.0322 5.0613 43 1 -1.4403 -6.1592 3.6839 44 1 0.7441 -7.0922 4.3956 45 1 0.7767 -5.9652 5.7730 46 1 -1.3192 -6.9650 6.6417 47 1 -1.3523 -8.0923 5.2647 48 1 -2.0049 -10.2380 8.1850 49 1 -1.0088 -2.8949 3.0737 50 1 -1.7694 -4.4015 2.5041 51 1 -0.8169 -3.4918 0.5323 52 1 0.3765 -4.6959 1.0553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363079499.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:42 Heat of formation + Delta-G solvation = 22.297043 kcal Electronic energy + Delta-G solvation = -26617.669994 eV Core-core repulsion = 23195.268902 eV Total energy + Delta-G solvation = -3422.401091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21875 -38.97347 -36.51194 -33.82774 -33.01688 -32.47372 -32.05834 -31.08270 -28.37131 -27.09835 -26.54412 -25.48493 -24.56346 -22.57434 -22.18708 -21.14627 -20.44156 -20.21371 -19.34226 -16.69159 -16.49137 -16.15479 -16.01867 -15.57660 -15.35387 -14.90630 -14.65700 -14.36704 -14.30611 -13.73639 -13.60862 -13.47075 -13.30020 -13.00799 -12.82335 -12.32838 -12.27824 -12.14540 -12.11805 -11.98975 -11.53638 -11.40816 -11.25887 -11.15675 -11.05962 -10.99296 -10.83855 -10.70316 -10.54413 -10.44045 -10.35259 -9.57335 -9.28454 -9.02023 -8.98992 -8.75796 -8.32213 -8.23673 -7.86582 -5.97363 -3.99060 1.14815 1.20715 3.32532 3.39809 3.44421 3.48118 4.00151 4.17988 4.49054 4.57236 4.63251 4.77473 4.84321 4.92370 5.00005 5.15048 5.18635 5.20119 5.25878 5.38451 5.39426 5.41794 5.47235 5.50006 5.54119 5.59123 5.71485 5.74040 5.77406 5.86127 5.86997 5.87490 6.01441 6.06349 6.10586 6.11842 6.22464 6.27694 6.31457 6.34465 6.37929 6.51913 6.75377 6.82652 6.84550 7.04974 7.17079 7.33525 7.51127 7.59007 7.71978 7.87286 8.03619 8.47358 9.08438 9.64773 11.14143 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027572 B = 0.002217 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.285766 B =12626.254134 C =13129.403134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.059 4.059 3 C -0.126 4.126 4 C -0.119 4.119 5 C -0.129 4.129 6 C -0.111 4.111 7 C -0.076 4.076 8 C 0.098 3.902 9 N -0.544 5.544 10 C 0.070 3.930 11 C -0.116 4.116 12 C 0.062 3.938 13 N -0.554 5.554 14 C 0.063 3.937 15 C -0.105 4.105 16 C 0.021 3.979 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.064 3.936 26 C 0.075 3.925 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.013 0.987 47 H 0.015 0.985 48 H 0.259 0.741 49 H 0.047 0.953 50 H 0.070 0.930 51 H 0.066 0.934 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 22.098 -18.070 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.147 4.147 6 C -0.130 4.130 7 C -0.077 4.077 8 C -0.029 4.029 9 N -0.268 5.268 10 C -0.056 4.056 11 C -0.155 4.155 12 C -0.065 4.065 13 N -0.279 5.279 14 C -0.064 4.064 15 C -0.143 4.143 16 C -0.016 4.016 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.065 4.065 26 C -0.055 4.055 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.031 0.969 47 H 0.033 0.967 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.084 0.916 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.672 22.113 -18.101 29.345 hybrid contribution 0.449 -0.906 0.882 1.342 sum 7.120 21.206 -17.219 28.230 Atomic orbital electron populations 1.20890 0.91144 1.03645 1.02044 1.19741 0.96225 0.92211 0.97753 1.21052 0.94242 0.97502 1.01593 1.21099 0.94362 0.97920 1.00388 1.21066 0.99692 0.92539 1.01425 1.21075 0.93682 0.98082 1.00167 1.19655 0.93159 0.94557 1.00291 1.20951 0.97793 0.93164 0.90944 1.59232 1.14298 1.47081 1.06239 1.21759 0.92430 1.00222 0.91230 1.21419 1.00628 0.97860 0.95567 1.22400 0.96843 0.93594 0.93663 1.60784 1.25586 1.19904 1.21588 1.22318 0.95230 0.93551 0.95307 1.21646 0.98093 0.96686 0.97833 1.19079 0.95045 0.93203 0.94313 1.21291 0.93137 1.14662 1.26348 0.92689 1.25036 0.94994 0.97660 0.96923 1.69979 1.10432 1.34057 1.39160 0.86549 0.81085 0.80852 0.79608 1.19749 1.21065 1.21033 1.21865 0.94841 0.97109 0.92668 1.21008 0.93901 0.93055 0.97516 0.91830 0.89318 0.92185 0.86377 0.86434 0.86365 0.86358 0.90137 0.94016 0.92903 0.91314 0.91289 0.91541 0.95061 0.90725 0.95553 0.91352 0.92801 0.93565 0.96887 0.96678 0.93132 0.93513 0.91136 0.91585 0.94991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.21 36.00 0.33 -0.63 16 2 C -0.06 -0.54 5.88 -104.62 -0.62 -1.16 16 3 C -0.13 -1.09 9.68 -39.58 -0.38 -1.47 16 4 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.13 -1.09 10.05 -39.58 -0.40 -1.48 16 6 C -0.11 -1.01 8.49 -39.58 -0.34 -1.34 16 7 C -0.08 -0.72 4.64 -104.62 -0.49 -1.20 16 8 C 0.10 0.91 4.25 -4.97 -0.02 0.89 16 9 N -0.54 -5.68 3.00 -241.21 -0.72 -6.40 16 10 C 0.07 0.80 5.15 -4.37 -0.02 0.77 16 11 C -0.12 -1.37 5.36 -27.47 -0.15 -1.52 16 12 C 0.06 0.88 4.81 -2.82 -0.01 0.86 16 13 N -0.55 -8.28 3.97 -234.30 -0.93 -9.21 16 14 C 0.06 1.10 4.81 -3.82 -0.02 1.09 16 15 C -0.10 -2.21 4.99 -26.73 -0.13 -2.34 16 16 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 17 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 18 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.06 0.81 5.44 -4.44 -0.02 0.79 16 26 C 0.08 0.83 5.03 -6.76 -0.03 0.80 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.80 6.38 -51.93 -0.33 0.46 16 29 H 0.06 0.44 8.05 -51.93 -0.42 0.02 16 30 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 31 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.12 0.95 8.00 -52.49 -0.42 0.53 16 34 H 0.08 0.68 7.20 -51.93 -0.37 0.30 16 35 H 0.04 0.39 7.92 -51.93 -0.41 -0.02 16 36 H 0.05 0.69 7.57 -51.93 -0.39 0.30 16 37 H 0.07 0.74 6.00 -51.93 -0.31 0.43 16 38 H 0.07 0.84 7.23 -51.93 -0.38 0.47 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.03 0.46 7.97 -51.93 -0.41 0.05 16 41 H 0.07 1.13 6.98 -51.93 -0.36 0.77 16 42 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 43 H 0.07 1.20 7.79 -51.93 -0.40 0.79 16 44 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 45 H 0.05 0.97 6.71 -51.93 -0.35 0.62 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.05 0.59 6.93 -51.93 -0.36 0.23 16 50 H 0.07 0.87 7.41 -51.92 -0.38 0.48 16 51 H 0.07 0.63 7.76 -51.93 -0.40 0.22 16 52 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -30.47 395.46 -12.70 -43.17 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -9.47 Total: -3.25 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -3.25 Total: -20.63 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.92 Total: -42.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.47 -12.70 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363079499.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.470 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds