Wall clock time and date at job start Tue Mar 31 2020 12:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00283 * 2 1 4 4 C 1.38214 * 119.99957 * 180.25550 * 3 2 1 5 5 C 1.38253 * 119.99978 * 359.51084 * 4 3 2 6 6 C 1.38213 * 120.00331 * 0.44451 * 5 4 3 7 7 C 1.38214 * 119.99908 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99899 * 359.97438 * 7 2 1 9 9 N 1.46899 * 109.47020 * 284.68881 * 8 7 2 10 10 C 1.47915 * 110.99937 * 292.20127 * 9 8 7 11 11 C 1.50802 * 108.49819 * 153.78621 * 10 9 8 12 12 C 1.53698 * 112.09979 * 92.55000 * 11 10 9 13 13 N 1.48069 * 112.46974 * 318.55707 * 12 11 10 14 14 C 1.46901 * 110.99935 * 192.19930 * 13 12 11 15 15 C 1.52998 * 109.46898 * 297.68408 * 14 13 12 16 16 C 1.53004 * 109.47416 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47455 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99518 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99963 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99821 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99927 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46869 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46934 * 119.99883 * 21 19 17 24 24 H 1.48494 * 109.47015 * 240.00113 * 21 19 17 25 25 C 1.44577 * 113.84954 * 318.30986 * 13 12 11 26 26 C 1.40010 * 111.00346 * 164.22940 * 9 8 7 27 27 H 1.09000 * 109.47422 * 95.26316 * 1 2 3 28 28 H 1.09001 * 109.47423 * 215.26304 * 1 2 3 29 29 H 1.09002 * 109.46928 * 335.26701 * 1 2 3 30 30 H 1.07997 * 119.99782 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.99962 * 179.72400 * 4 3 2 32 32 H 1.08003 * 120.00245 * 180.27577 * 5 4 3 33 33 H 1.08000 * 120.00494 * 179.83707 * 6 5 4 34 34 H 1.08994 * 109.47312 * 44.68986 * 8 7 2 35 35 H 1.08998 * 109.47342 * 164.69168 * 8 7 2 36 36 H 1.08997 * 109.63234 * 273.49322 * 10 9 8 37 37 H 1.08995 * 109.63049 * 34.08667 * 10 9 8 38 38 H 1.08999 * 108.95971 * 331.87677 * 11 10 9 39 39 H 1.08994 * 108.88901 * 213.17581 * 11 10 9 40 40 H 1.08997 * 108.88697 * 197.78003 * 12 11 10 41 41 H 1.09006 * 108.88199 * 79.32185 * 12 11 10 42 42 H 1.09002 * 109.47472 * 57.68055 * 14 13 12 43 43 H 1.09000 * 109.47386 * 177.68831 * 14 13 12 44 44 H 1.09008 * 109.47430 * 299.99981 * 15 14 13 45 45 H 1.09002 * 109.47488 * 60.00000 * 15 14 13 46 46 H 1.08997 * 109.47324 * 300.00597 * 16 15 14 47 47 H 1.09002 * 109.46717 * 59.99620 * 16 15 14 48 48 H 0.97004 * 119.99574 * 180.02562 * 20 19 17 49 49 H 1.08994 * 109.58014 * 334.42652 * 25 13 12 50 50 H 1.09007 * 109.67586 * 214.09971 * 25 13 12 51 51 H 1.08999 * 108.96084 * 308.77196 * 26 9 8 52 52 H 1.09001 * 108.95445 * 67.50968 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0053 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 7 0.8960 -2.7496 1.3418 10 6 1.9771 -3.0089 2.3174 11 6 1.4868 -2.6202 3.6895 12 6 0.8602 -3.8077 4.4375 13 7 0.0099 -4.6442 3.5601 14 6 -0.7952 -5.5857 4.3496 15 6 0.1316 -6.5385 5.1073 16 6 -0.7069 -7.5189 5.9301 17 6 0.2060 -8.4578 6.6759 18 1 1.2771 -8.3643 6.5736 19 6 -0.3263 -9.4360 7.4888 20 7 -1.6305 -9.5500 7.6128 21 14 0.8053 -10.5994 8.4138 22 1 2.2188 -10.2636 8.1065 23 1 0.5704 -10.4617 9.8737 24 1 0.5261 -11.9970 7.9970 25 6 -0.8220 -3.8836 2.6548 26 6 -0.0901 -3.7429 1.3049 27 1 -0.3634 -0.0943 -1.0233 28 1 -0.3634 -0.8391 0.5933 29 1 -0.3633 0.9334 0.4300 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1325 -0.0098 32 1 5.3517 -0.0002 -0.0001 33 1 4.1206 -2.1324 0.0016 34 1 0.6298 -2.4520 -0.7207 35 1 2.1210 -3.3126 -0.2693 36 1 2.2338 -4.0682 2.3067 37 1 2.8534 -2.4142 2.0596 38 1 0.7409 -1.8319 3.5888 39 1 2.3273 -2.2399 4.2699 40 1 0.2527 -3.4268 5.2584 41 1 1.6580 -4.4261 4.8490 42 1 -1.4077 -5.0322 5.0613 43 1 -1.4403 -6.1592 3.6839 44 1 0.7441 -7.0922 4.3956 45 1 0.7767 -5.9652 5.7730 46 1 -1.3192 -6.9650 6.6417 47 1 -1.3523 -8.0923 5.2647 48 1 -2.0049 -10.2380 8.1850 49 1 -1.0088 -2.8949 3.0737 50 1 -1.7694 -4.4015 2.5041 51 1 -0.8169 -3.4918 0.5323 52 1 0.3765 -4.6959 1.0553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363079499.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:41 Heat of formation + Delta-G solvation = 7.379257 kcal Electronic energy + Delta-G solvation = -26618.316877 eV Core-core repulsion = 23195.268902 eV Total energy + Delta-G solvation = -3423.047975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01060 -39.86575 -37.65370 -35.66662 -34.04061 -33.40784 -33.23885 -32.35353 -29.59723 -28.10086 -27.51112 -26.89322 -25.50520 -24.29123 -22.82867 -22.23834 -21.61420 -21.23942 -20.58492 -18.52054 -17.39930 -17.19282 -17.04103 -16.55623 -16.47334 -16.10268 -15.89258 -15.56124 -15.46646 -15.14766 -14.41438 -14.37371 -14.26918 -14.02688 -13.89237 -13.64740 -13.56997 -13.33614 -12.93446 -12.88984 -12.80757 -12.74177 -12.64710 -12.56733 -12.25505 -12.11044 -11.99167 -11.97229 -11.76380 -11.64253 -11.49151 -11.37541 -11.29502 -11.01332 -10.56464 -9.65030 -9.40501 -9.12351 -9.07081 -8.21137 -6.31984 0.50216 0.57090 1.38827 1.39102 1.52776 2.39942 2.78644 2.95734 3.11790 3.22820 3.87137 3.93387 3.99791 4.05893 4.14250 4.17385 4.20238 4.27692 4.32679 4.38647 4.45887 4.51607 4.58158 4.61323 4.65866 4.71499 4.74272 4.80842 4.85516 4.91855 4.93327 4.95922 4.97062 5.02338 5.08456 5.11600 5.13972 5.19902 5.24758 5.27935 5.33807 5.48698 5.51630 5.65523 5.69375 5.74057 5.85137 5.85716 6.11897 6.17964 6.22079 6.27781 6.42059 6.52035 6.84843 7.37097 8.90969 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027572 B = 0.002217 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.285766 B =12626.254134 C =13129.403134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.136 4.136 4 C -0.125 4.125 5 C -0.137 4.137 6 C -0.122 4.122 7 C -0.088 4.088 8 C 0.102 3.898 9 N -0.541 5.541 10 C 0.076 3.924 11 C -0.106 4.106 12 C 0.063 3.937 13 N -0.556 5.556 14 C 0.075 3.925 15 C -0.087 4.087 16 C 0.026 3.974 17 C -0.541 4.541 18 H 0.057 0.943 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.064 3.936 26 C 0.083 3.917 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.024 0.976 41 H 0.061 0.939 42 H 0.021 0.979 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.046 0.954 46 H -0.011 1.011 47 H -0.008 1.008 48 H 0.264 0.736 49 H 0.049 0.951 50 H 0.074 0.926 51 H 0.088 0.912 52 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.908 23.198 -18.794 30.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 C -0.154 4.154 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.141 4.141 7 C -0.088 4.088 8 C -0.024 4.024 9 N -0.265 5.265 10 C -0.051 4.051 11 C -0.144 4.144 12 C -0.065 4.065 13 N -0.281 5.281 14 C -0.052 4.052 15 C -0.125 4.125 16 C -0.012 4.012 17 C -0.579 4.579 18 H 0.075 0.925 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.202 1.202 25 C -0.065 4.065 26 C -0.047 4.047 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.008 0.992 47 H 0.010 0.990 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.093 0.907 51 H 0.106 0.894 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 7.833 23.232 -18.844 30.922 hybrid contribution 0.082 -1.200 1.080 1.616 sum 7.915 22.032 -17.763 29.387 Atomic orbital electron populations 1.20858 0.90464 1.03525 1.02461 1.19954 0.96898 0.92412 0.97907 1.21307 0.94682 0.97957 1.01411 1.21394 0.94486 0.98725 0.99688 1.21327 1.00664 0.92442 1.01083 1.21241 0.93773 0.98696 1.00377 1.19712 0.93425 0.94610 1.01091 1.20944 0.98074 0.93171 0.90238 1.59240 1.13958 1.46451 1.06892 1.21671 0.93022 0.99113 0.91306 1.21338 1.00818 0.96525 0.95730 1.22411 0.96227 0.94044 0.93780 1.60752 1.25584 1.20460 1.21325 1.22044 0.94489 0.93536 0.95171 1.21377 0.97713 0.96178 0.97279 1.18972 0.94805 0.93547 0.93834 1.21700 0.93601 1.15551 1.27028 0.92469 1.25998 0.96670 0.99489 0.97828 1.70103 1.12391 1.34943 1.39918 0.85389 0.79126 0.78336 0.78144 1.18708 1.20252 1.20232 1.21946 0.94941 0.96786 0.92786 1.20925 0.94308 0.92506 0.96943 0.90948 0.90246 0.91613 0.84994 0.84579 0.84819 0.85884 0.89149 0.94250 0.94768 0.90536 0.91287 0.90320 0.95760 0.92064 0.96059 0.91290 0.93300 0.93518 0.99248 0.98962 0.92756 0.93235 0.90738 0.89427 0.96638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 9.21 71.24 0.66 -1.00 16 2 C -0.07 -1.20 5.88 -19.87 -0.12 -1.32 16 3 C -0.14 -2.09 9.68 22.27 0.22 -1.88 16 4 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 5 C -0.14 -2.08 10.05 22.27 0.22 -1.85 16 6 C -0.12 -2.05 8.49 22.27 0.19 -1.86 16 7 C -0.09 -1.53 4.64 -19.86 -0.09 -1.63 16 8 C 0.10 1.74 4.25 85.56 0.36 2.11 16 9 N -0.54 -10.57 3.00 -917.04 -2.76 -13.32 16 10 C 0.08 1.64 5.15 85.39 0.44 2.08 16 11 C -0.11 -2.38 5.36 30.12 0.16 -2.21 16 12 C 0.06 1.75 4.81 86.31 0.41 2.16 16 13 N -0.56 -16.50 3.97 -895.19 -3.55 -20.05 16 14 C 0.08 2.68 4.81 86.30 0.42 3.09 16 15 C -0.09 -3.77 4.99 30.59 0.15 -3.62 16 16 C 0.03 1.42 4.97 29.85 0.15 1.56 16 17 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 20 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 21 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 C 0.06 1.55 5.44 87.14 0.47 2.03 16 26 C 0.08 1.73 5.03 87.95 0.44 2.18 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.28 6.38 -2.39 -0.02 1.26 16 29 H 0.06 0.84 8.05 -2.39 -0.02 0.82 16 30 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.12 1.84 8.00 -2.91 -0.02 1.82 16 34 H 0.09 1.35 7.20 -2.39 -0.02 1.33 16 35 H 0.04 0.69 7.92 -2.39 -0.02 0.67 16 36 H 0.03 0.88 7.57 -2.39 -0.02 0.86 16 37 H 0.08 1.56 6.00 -2.39 -0.01 1.54 16 38 H 0.07 1.58 7.23 -2.39 -0.02 1.56 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.02 0.71 7.97 -2.39 -0.02 0.69 16 41 H 0.06 1.86 6.98 -2.38 -0.02 1.85 16 42 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 43 H 0.07 2.44 7.79 -2.39 -0.02 2.42 16 44 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.05 1.99 6.71 -2.39 -0.02 1.97 16 46 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 47 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 48 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 49 H 0.05 1.19 6.93 -2.39 -0.02 1.18 16 50 H 0.07 1.75 7.41 -2.38 -0.02 1.74 16 51 H 0.09 1.47 7.76 -2.39 -0.02 1.46 16 52 H 0.02 0.38 8.06 -2.39 -0.02 0.36 16 Total: -1.00 -65.42 395.46 1.87 -63.55 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.86 Total: 13.02 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 5.01 Total: -32.89 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -6.02 Total: -90.83 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.42 1.87 -63.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363079499.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.928 kcal (2) G-P(sol) polarization free energy of solvation -65.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds