Wall clock time and date at job start Tue Mar 31 2020 11:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38657 * 125.50165 * 2 1 4 4 C 1.38860 * 107.64692 * 179.97438 * 3 2 1 5 5 N 1.33985 * 132.57743 * 179.97438 * 4 3 2 6 6 C 1.31213 * 120.81446 * 179.97438 * 5 4 3 7 7 C 1.40239 * 120.28114 * 0.03941 * 6 5 4 8 8 C 1.50696 * 120.27637 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47549 * 144.97984 * 8 7 6 10 10 C 1.53009 * 109.47089 * 264.97916 * 8 7 6 11 11 N 1.46899 * 109.47147 * 24.97418 * 8 7 6 12 12 C 1.46901 * 111.00351 * 155.00226 * 11 8 7 13 13 C 1.52994 * 109.47571 * 180.02562 * 12 11 8 14 14 C 1.52998 * 109.46685 * 299.99978 * 13 12 11 15 15 C 1.53000 * 109.47342 * 59.99464 * 13 12 11 16 16 C 1.50695 * 109.47251 * 179.97438 * 13 12 11 17 17 H 1.08001 * 120.00136 * 359.97438 * 16 13 12 18 18 C 1.37885 * 120.00032 * 179.97438 * 16 13 12 19 19 N 1.31512 * 119.99779 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99832 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47176 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46894 * 120.00381 * 20 18 16 23 23 H 1.48499 * 109.46926 * 239.99686 * 20 18 16 24 24 C 1.35534 * 119.45475 * 359.97438 * 7 6 5 25 25 C 1.50696 * 120.44117 * 179.97438 * 24 7 6 26 26 N 1.36526 * 119.11995 * 0.02562 * 24 7 6 27 27 N 1.31405 * 125.50440 * 179.68949 * 2 1 3 28 28 H 1.09001 * 109.46953 * 89.99960 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99558 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00189 * 1 2 3 31 31 H 1.08003 * 126.18053 * 359.94375 * 3 2 1 32 32 H 1.08003 * 119.85770 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46870 * 59.99652 * 10 8 7 34 34 H 1.09005 * 109.47172 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.47039 * 299.99453 * 10 8 7 36 36 H 1.00899 * 111.00425 * 278.96008 * 11 8 7 37 37 H 1.09001 * 109.46728 * 300.00553 * 12 11 8 38 38 H 1.08999 * 109.47073 * 59.99645 * 12 11 8 39 39 H 1.09004 * 109.47438 * 60.00086 * 14 13 12 40 40 H 1.09003 * 109.47015 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.47484 * 299.99840 * 14 13 12 42 42 H 1.09001 * 109.46758 * 60.00105 * 15 13 12 43 43 H 1.08997 * 109.47070 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.47132 * 300.00665 * 15 13 12 45 45 H 0.96996 * 120.00019 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.47085 * 270.02516 * 25 24 7 47 47 H 1.09010 * 109.46931 * 30.02420 * 25 24 7 48 48 H 1.08994 * 109.47343 * 150.02037 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3123 1.1288 0.0000 4 6 3.6340 0.7031 0.0006 5 7 4.7994 1.3642 0.0004 6 6 5.9401 0.7157 0.0016 7 6 5.9563 -0.6866 0.0023 8 6 7.2664 -1.4312 0.0043 9 1 7.1658 -2.3422 0.5943 10 6 7.6492 -1.7937 -1.4322 11 7 8.3118 -0.5814 0.5899 12 6 9.3983 -1.3949 1.1516 13 6 10.4652 -0.4770 1.7515 14 6 11.0245 0.4366 0.6590 15 6 9.8412 0.3750 2.8586 16 6 11.5795 -1.3116 2.3282 17 1 11.5313 -2.3891 2.2729 18 6 12.6605 -0.6996 2.9266 19 7 12.7194 0.6125 2.9935 20 14 14.0421 -1.7343 3.6409 21 1 13.7388 -3.1736 3.4372 22 1 15.3171 -1.3961 2.9589 23 1 14.1689 -1.4554 5.0940 24 6 4.7839 -1.3667 0.0022 25 6 4.7754 -2.8736 0.0024 26 7 3.6108 -0.6684 0.0010 27 7 2.2702 -1.0697 0.0058 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9728 2.1541 -0.0009 32 1 6.8704 1.2643 0.0010 33 1 7.7499 -0.8827 -2.0222 34 1 8.5971 -2.3319 -1.4308 35 1 6.8736 -2.4243 -1.8667 36 1 8.6659 0.0758 -0.0888 37 1 8.9999 -2.0456 1.9301 38 1 9.8426 -2.0022 0.3630 39 1 10.2183 1.0404 0.2422 40 1 11.7843 1.0910 1.0864 41 1 11.4691 -0.1702 -0.1298 42 1 9.4426 -0.2759 3.6368 43 1 10.6014 1.0286 3.2862 44 1 9.0350 0.9786 2.4418 45 1 13.4797 1.0430 3.4148 46 1 4.7740 -3.2370 -1.0253 47 1 5.6632 -3.2419 0.5168 48 1 3.8833 -3.2319 0.5158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414169355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:53 Heat of formation + Delta-G solvation = 106.034106 kcal Electronic energy + Delta-G solvation = -26708.520319 eV Core-core repulsion = 23186.209996 eV Total energy + Delta-G solvation = -3522.310323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38777 -39.02273 -37.16578 -35.44259 -34.55887 -32.38888 -31.14454 -29.75152 -28.96112 -28.41011 -27.76236 -25.63049 -25.28537 -24.21639 -23.85709 -22.53753 -21.14567 -20.10340 -18.70438 -18.00888 -16.86744 -16.32225 -16.10531 -15.68594 -14.99513 -14.62031 -14.46082 -14.16448 -13.98910 -13.77033 -13.34012 -13.32062 -13.20363 -12.89689 -12.81638 -12.69367 -12.65846 -12.39218 -12.14778 -11.98862 -11.74354 -11.47017 -11.22165 -11.05910 -10.94551 -10.71833 -10.63564 -10.57441 -10.24769 -10.10559 -9.77149 -9.46313 -9.27740 -9.13731 -8.68390 -8.34343 -7.96332 -7.80769 -5.95991 -4.06520 0.54421 0.89571 1.97395 2.48577 3.27188 3.36147 3.38614 3.42789 3.83196 3.94571 4.29239 4.35282 4.48819 4.70703 4.90289 4.94216 4.97310 5.13582 5.19091 5.22386 5.29992 5.31883 5.36361 5.40574 5.49734 5.54292 5.68874 5.74597 5.78838 5.87786 6.06348 6.18167 6.21917 6.29972 6.38882 6.55818 6.63519 6.81638 6.98738 7.09788 7.30025 7.36738 7.41984 7.57073 7.69177 7.70374 7.76452 7.78111 8.15214 8.28643 8.49773 8.94961 9.58959 11.04539 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.002719 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.346509 B =10296.416123 C =10608.225203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.108 3.892 3 C -0.276 4.276 4 C 0.264 3.736 5 N -0.476 5.476 6 C 0.215 3.785 7 C -0.165 4.165 8 C 0.136 3.864 9 H 0.093 0.907 10 C -0.179 4.179 11 N -0.681 5.681 12 C 0.077 3.923 13 C 0.069 3.931 14 C -0.133 4.133 15 C -0.120 4.120 16 C -0.507 4.507 17 H 0.052 0.948 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.888 3.112 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.182 3.818 25 C -0.119 4.119 26 N -0.306 5.306 27 N -0.322 5.322 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.184 0.816 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.341 0.659 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.010 0.990 40 H 0.084 0.916 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.074 0.926 44 H 0.020 0.980 45 H 0.258 0.742 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.005 -2.853 -8.618 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.050 4.050 3 C -0.307 4.307 4 C 0.036 3.964 5 N -0.188 5.188 6 C 0.032 3.968 7 C -0.172 4.172 8 C 0.024 3.976 9 H 0.111 0.889 10 C -0.238 4.238 11 N -0.313 5.313 12 C -0.051 4.051 13 C 0.069 3.931 14 C -0.191 4.191 15 C -0.178 4.178 16 C -0.546 4.546 17 H 0.071 0.929 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.716 3.284 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.211 1.211 24 C 0.066 3.934 25 C -0.176 4.176 26 N -0.076 5.076 27 N -0.148 5.148 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.175 0.825 32 H 0.201 0.799 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.161 0.839 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.029 0.971 40 H 0.102 0.898 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.093 0.907 44 H 0.039 0.961 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.115 0.885 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.547 -3.000 -7.932 20.394 hybrid contribution 1.411 -0.768 -0.342 1.643 sum -17.136 -3.768 -8.274 19.399 Atomic orbital electron populations 1.20243 0.85842 1.03696 1.03301 1.22201 0.97143 0.90258 0.95385 1.20746 0.87614 1.00045 1.22323 1.20833 0.95018 0.80322 1.00218 1.68330 0.96181 1.36855 1.17385 1.23387 0.96072 0.91170 0.86209 1.20361 0.94390 0.95470 1.07012 1.20256 0.87856 0.95009 0.94511 0.88943 1.22509 1.02206 1.02229 0.96807 1.60662 1.14005 1.18509 1.38151 1.22203 0.90564 0.95553 0.96747 1.18095 0.90615 0.92125 0.92301 1.21848 0.99921 0.99738 0.97584 1.21655 0.98571 0.99416 0.98160 1.21114 1.03814 0.92605 1.37029 0.92943 1.24883 0.97960 0.94844 0.95879 1.69833 1.30227 1.07805 1.44335 0.86614 0.82331 0.80589 0.78870 1.19973 1.21171 1.21119 1.20342 0.81696 0.95769 0.95593 1.21010 1.05201 0.87094 1.04280 1.46981 1.05781 1.07183 1.47624 1.77720 0.82750 1.21489 1.32884 0.90082 0.90606 0.89925 0.82470 0.79886 0.92165 0.91283 0.92438 0.83863 0.92367 0.96270 0.97063 0.89766 0.96121 0.96322 0.90693 0.96117 0.93192 0.89170 0.88458 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.43 36.01 0.38 -0.18 16 2 C 0.11 1.34 7.16 -82.62 -0.59 0.75 16 3 C -0.28 -3.74 10.83 -39.20 -0.42 -4.16 16 4 C 0.26 4.10 7.92 -155.51 -1.23 2.86 16 5 N -0.48 -7.37 10.48 -12.21 -0.13 -7.50 16 6 C 0.22 2.97 10.56 -17.06 -0.18 2.79 16 7 C -0.17 -2.12 5.03 -104.84 -0.53 -2.64 16 8 C 0.14 1.65 2.30 -68.86 -0.16 1.49 16 9 H 0.09 1.09 5.82 -51.93 -0.30 0.79 16 10 C -0.18 -1.87 9.14 37.16 0.34 -1.53 16 11 N -0.68 -10.21 4.49 -107.95 -0.48 -10.69 16 12 C 0.08 1.41 4.38 -3.83 -0.02 1.40 16 13 C 0.07 1.55 0.57 -155.67 -0.09 1.46 16 14 C -0.13 -2.91 7.92 37.16 0.29 -2.62 16 15 C -0.12 -2.78 8.09 37.16 0.30 -2.48 16 16 C -0.51 -12.96 8.01 -34.44 -0.28 -13.23 16 17 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 18 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.88 -23.72 9.35 55.43 0.52 -23.20 16 20 Si 0.89 20.54 29.54 -169.99 -5.02 15.51 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.18 2.35 6.86 -81.47 -0.56 1.79 16 25 C -0.12 -1.15 9.45 36.00 0.34 -0.81 16 26 N -0.31 -4.53 3.90 -8.49 -0.03 -4.56 16 27 N -0.32 -4.62 12.52 33.52 0.42 -4.20 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.18 2.30 6.96 -52.48 -0.37 1.94 16 33 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 34 H 0.07 0.76 7.45 -51.93 -0.39 0.37 16 35 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 36 H 0.34 4.95 5.97 -39.29 -0.23 4.72 16 37 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 38 H 0.02 0.35 7.44 -51.93 -0.39 -0.04 16 39 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 40 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 1.93 6.07 -51.93 -0.32 1.62 16 44 H 0.02 0.43 7.60 -51.93 -0.39 0.03 16 45 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 0.82 6.03 -51.92 -0.31 0.50 16 48 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -29.50 376.57 -9.08 -38.58 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.53 Total: 3.87 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.49 Total: -13.48 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.29 Total: -50.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.50 -9.08 -38.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414169355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.611 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds