Wall clock time and date at job start Tue Mar 31 2020 11:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38657 * 125.50165 * 2 1 4 4 C 1.38860 * 107.64692 * 179.97438 * 3 2 1 5 5 N 1.33985 * 132.57743 * 179.97438 * 4 3 2 6 6 C 1.31213 * 120.81446 * 179.97438 * 5 4 3 7 7 C 1.40239 * 120.28114 * 0.03941 * 6 5 4 8 8 C 1.50696 * 120.27637 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47549 * 144.97984 * 8 7 6 10 10 C 1.53009 * 109.47089 * 264.97916 * 8 7 6 11 11 N 1.46899 * 109.47147 * 24.97418 * 8 7 6 12 12 C 1.46901 * 111.00351 * 155.00226 * 11 8 7 13 13 C 1.52994 * 109.47571 * 180.02562 * 12 11 8 14 14 C 1.52998 * 109.46685 * 299.99978 * 13 12 11 15 15 C 1.53000 * 109.47342 * 59.99464 * 13 12 11 16 16 C 1.50695 * 109.47251 * 179.97438 * 13 12 11 17 17 H 1.08001 * 120.00136 * 359.97438 * 16 13 12 18 18 C 1.37885 * 120.00032 * 179.97438 * 16 13 12 19 19 N 1.31512 * 119.99779 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99832 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47176 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46894 * 120.00381 * 20 18 16 23 23 H 1.48499 * 109.46926 * 239.99686 * 20 18 16 24 24 C 1.35534 * 119.45475 * 359.97438 * 7 6 5 25 25 C 1.50696 * 120.44117 * 179.97438 * 24 7 6 26 26 N 1.36526 * 119.11995 * 0.02562 * 24 7 6 27 27 N 1.31405 * 125.50440 * 179.68949 * 2 1 3 28 28 H 1.09001 * 109.46953 * 89.99960 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99558 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00189 * 1 2 3 31 31 H 1.08003 * 126.18053 * 359.94375 * 3 2 1 32 32 H 1.08003 * 119.85770 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46870 * 59.99652 * 10 8 7 34 34 H 1.09005 * 109.47172 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.47039 * 299.99453 * 10 8 7 36 36 H 1.00899 * 111.00425 * 278.96008 * 11 8 7 37 37 H 1.09001 * 109.46728 * 300.00553 * 12 11 8 38 38 H 1.08999 * 109.47073 * 59.99645 * 12 11 8 39 39 H 1.09004 * 109.47438 * 60.00086 * 14 13 12 40 40 H 1.09003 * 109.47015 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.47484 * 299.99840 * 14 13 12 42 42 H 1.09001 * 109.46758 * 60.00105 * 15 13 12 43 43 H 1.08997 * 109.47070 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.47132 * 300.00665 * 15 13 12 45 45 H 0.96996 * 120.00019 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.47085 * 270.02516 * 25 24 7 47 47 H 1.09010 * 109.46931 * 30.02420 * 25 24 7 48 48 H 1.08994 * 109.47343 * 150.02037 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3123 1.1288 0.0000 4 6 3.6340 0.7031 0.0006 5 7 4.7994 1.3642 0.0004 6 6 5.9401 0.7157 0.0016 7 6 5.9563 -0.6866 0.0023 8 6 7.2664 -1.4312 0.0043 9 1 7.1658 -2.3422 0.5943 10 6 7.6492 -1.7937 -1.4322 11 7 8.3118 -0.5814 0.5899 12 6 9.3983 -1.3949 1.1516 13 6 10.4652 -0.4770 1.7515 14 6 11.0245 0.4366 0.6590 15 6 9.8412 0.3750 2.8586 16 6 11.5795 -1.3116 2.3282 17 1 11.5313 -2.3891 2.2729 18 6 12.6605 -0.6996 2.9266 19 7 12.7194 0.6125 2.9935 20 14 14.0421 -1.7343 3.6409 21 1 13.7388 -3.1736 3.4372 22 1 15.3171 -1.3961 2.9589 23 1 14.1689 -1.4554 5.0940 24 6 4.7839 -1.3667 0.0022 25 6 4.7754 -2.8736 0.0024 26 7 3.6108 -0.6684 0.0010 27 7 2.2702 -1.0697 0.0058 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9728 2.1541 -0.0009 32 1 6.8704 1.2643 0.0010 33 1 7.7499 -0.8827 -2.0222 34 1 8.5971 -2.3319 -1.4308 35 1 6.8736 -2.4243 -1.8667 36 1 8.6659 0.0758 -0.0888 37 1 8.9999 -2.0456 1.9301 38 1 9.8426 -2.0022 0.3630 39 1 10.2183 1.0404 0.2422 40 1 11.7843 1.0910 1.0864 41 1 11.4691 -0.1702 -0.1298 42 1 9.4426 -0.2759 3.6368 43 1 10.6014 1.0286 3.2862 44 1 9.0350 0.9786 2.4418 45 1 13.4797 1.0430 3.4148 46 1 4.7740 -3.2370 -1.0253 47 1 5.6632 -3.2419 0.5168 48 1 3.8833 -3.2319 0.5158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414169355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:52 Heat of formation + Delta-G solvation = 90.518594 kcal Electronic energy + Delta-G solvation = -26709.193122 eV Core-core repulsion = 23186.209996 eV Total energy + Delta-G solvation = -3522.983126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38906 -40.06228 -38.53813 -36.71156 -35.72088 -33.75171 -32.52168 -30.73387 -30.14010 -29.26976 -28.63340 -27.43718 -27.20210 -25.65045 -24.87522 -23.56873 -22.16826 -21.07248 -20.37291 -19.10567 -17.99309 -17.71864 -17.31593 -17.07192 -16.43498 -15.87213 -15.77402 -15.22275 -14.94238 -14.78330 -14.48378 -14.33164 -14.13165 -14.10128 -13.97906 -13.88437 -13.58263 -13.42350 -13.22738 -13.10629 -13.07073 -12.97415 -12.69730 -12.45917 -12.41358 -12.31979 -12.06917 -12.01939 -11.87684 -11.52299 -11.26098 -10.93501 -10.79297 -10.53993 -10.30749 -10.23141 -9.18697 -8.83870 -7.93277 -6.09177 -0.45113 -0.13688 1.00721 1.42355 1.46889 1.53949 1.54761 2.37955 2.48714 2.86174 2.99887 3.29648 3.35475 3.37547 3.72663 3.97563 4.09401 4.12128 4.26536 4.33883 4.44575 4.48266 4.53434 4.63373 4.69031 4.73252 4.77982 4.81412 4.88990 4.89814 4.94689 4.99974 5.07322 5.13485 5.21430 5.25178 5.28164 5.36559 5.45206 5.47807 5.61178 5.64932 5.75386 5.83760 6.18503 6.29462 6.40574 6.43156 6.53180 6.63736 6.65658 7.02020 7.58590 9.04621 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.002719 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.346509 B =10296.416123 C =10608.225203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.110 3.890 3 C -0.288 4.288 4 C 0.236 3.764 5 N -0.501 5.501 6 C 0.209 3.791 7 C -0.169 4.169 8 C 0.144 3.856 9 H 0.100 0.900 10 C -0.173 4.173 11 N -0.685 5.685 12 C 0.094 3.906 13 C 0.060 3.940 14 C -0.123 4.123 15 C -0.108 4.108 16 C -0.520 4.520 17 H 0.048 0.952 18 C 0.021 3.979 19 N -0.904 5.904 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.288 1.288 24 C 0.178 3.822 25 C -0.116 4.116 26 N -0.317 5.317 27 N -0.342 5.342 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.172 0.828 32 H 0.191 0.809 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.345 0.655 37 H 0.051 0.949 38 H 0.024 0.976 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.020 0.980 42 H 0.007 0.993 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.255 0.745 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.425 -4.055 -9.577 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.048 4.048 3 C -0.318 4.318 4 C 0.008 3.992 5 N -0.213 5.213 6 C 0.027 3.973 7 C -0.176 4.176 8 C 0.032 3.968 9 H 0.118 0.882 10 C -0.232 4.232 11 N -0.317 5.317 12 C -0.034 4.034 13 C 0.060 3.940 14 C -0.181 4.181 15 C -0.166 4.166 16 C -0.559 4.559 17 H 0.066 0.934 18 C -0.178 4.178 19 N -0.543 5.543 20 Si 0.767 3.233 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.214 1.214 24 C 0.062 3.938 25 C -0.172 4.172 26 N -0.087 5.087 27 N -0.168 5.168 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.190 0.810 32 H 0.208 0.792 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.165 0.835 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.971 -4.211 -8.900 22.266 hybrid contribution 1.764 -0.371 -0.046 1.803 sum -18.207 -4.582 -8.947 20.797 Atomic orbital electron populations 1.20441 0.82571 1.05013 1.04792 1.22934 0.99049 0.89266 0.93582 1.21137 0.87327 1.01221 1.22162 1.21224 0.95681 0.81094 1.01216 1.68317 0.96685 1.37553 1.18723 1.23587 0.95986 0.91933 0.85835 1.20321 0.94663 0.94985 1.07605 1.20240 0.86416 0.94501 0.95629 0.88208 1.22442 1.02615 1.02610 0.95486 1.60497 1.13377 1.18758 1.39102 1.21806 0.90302 0.94676 0.96645 1.18136 0.91127 0.92466 0.92305 1.21680 0.99835 0.99341 0.97234 1.21498 0.98006 0.98934 0.98135 1.21485 1.04780 0.92765 1.36823 0.93420 1.25511 0.99973 0.95706 0.96601 1.69975 1.30546 1.08810 1.44976 0.85796 0.80065 0.79561 0.77872 1.19447 1.21144 1.21429 1.20866 0.81272 0.97274 0.94372 1.21125 1.05666 0.84824 1.05615 1.47180 1.06338 1.07119 1.48108 1.77675 0.82834 1.22554 1.33778 0.88331 0.89941 0.87937 0.81030 0.79219 0.92055 0.91547 0.90585 0.83472 0.93020 0.95824 0.94387 0.93013 0.96044 0.97350 0.93674 0.94557 0.93541 0.87227 0.87005 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.43 71.24 0.74 -0.15 16 2 C 0.11 2.57 7.16 42.72 0.31 2.88 16 3 C -0.29 -7.56 10.83 22.52 0.24 -7.32 16 4 C 0.24 7.23 7.92 133.13 1.05 8.29 16 5 N -0.50 -15.46 10.48 -192.55 -2.02 -17.48 16 6 C 0.21 5.65 10.56 85.27 0.90 6.55 16 7 C -0.17 -4.08 5.03 -20.00 -0.10 -4.18 16 8 C 0.14 3.17 2.30 44.17 0.10 3.27 16 9 H 0.10 2.09 5.82 -2.39 -0.01 2.08 16 10 C -0.17 -3.15 9.14 71.99 0.66 -2.49 16 11 N -0.69 -19.32 4.49 -495.45 -2.22 -21.54 16 12 C 0.09 3.32 4.38 86.30 0.38 3.69 16 13 C 0.06 2.66 0.57 -52.93 -0.03 2.63 16 14 C -0.12 -5.30 7.92 71.98 0.57 -4.73 16 15 C -0.11 -4.99 8.09 71.98 0.58 -4.41 16 16 C -0.52 -26.49 8.01 25.60 0.21 -26.28 16 17 H 0.05 2.42 7.74 -2.91 -0.02 2.39 16 18 C 0.02 1.10 5.15 84.66 0.44 1.53 16 19 N -0.90 -49.28 9.35 21.45 0.20 -49.07 16 20 Si 0.94 42.25 29.54 68.60 2.03 44.28 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.18 4.34 6.86 41.20 0.28 4.62 16 25 C -0.12 -1.97 9.45 71.23 0.67 -1.29 16 26 N -0.32 -9.14 3.90 -180.76 -0.71 -9.84 16 27 N -0.34 -9.44 12.52 -47.85 -0.60 -10.04 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.19 4.64 6.96 -2.91 -0.02 4.62 16 33 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 34 H 0.07 1.28 7.45 -2.38 -0.02 1.26 16 35 H 0.08 1.12 7.90 -2.39 -0.02 1.10 16 36 H 0.34 9.33 5.97 -89.69 -0.54 8.80 16 37 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 38 H 0.02 0.81 7.44 -2.39 -0.02 0.79 16 39 H 0.04 1.39 6.57 -2.39 -0.02 1.37 16 40 H 0.05 2.58 6.07 -2.39 -0.01 2.57 16 41 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.04 2.35 6.07 -2.39 -0.01 2.34 16 44 H 0.04 1.51 7.60 -2.39 -0.02 1.49 16 45 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 46 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.11 1.56 6.03 -2.38 -0.01 1.55 16 48 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 Total: -1.00 -63.98 376.57 4.11 -59.86 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.43 Total: 21.22 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 7.00 Total: -17.39 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -5.35 Total: -107.97 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -63.98 4.11 -59.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414169355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.383 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds