Wall clock time and date at job start Tue Mar 31 2020 11:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34945 * 126.04188 * 2 1 4 4 C 1.35308 * 107.75035 * 180.14648 * 3 2 1 5 5 C 1.50695 * 126.04311 * 179.86891 * 4 3 2 6 6 H 1.08999 * 110.28798 * 346.84968 * 5 4 3 7 7 C 1.54378 * 110.32717 * 224.60871 * 5 4 3 8 8 N 1.48562 * 104.59640 * 217.25044 * 7 5 4 9 9 C 1.46899 * 110.99953 * 159.04195 * 8 7 5 10 10 C 1.52994 * 109.47225 * 66.15899 * 9 8 7 11 11 H 1.09002 * 109.47295 * 305.81139 * 10 9 8 12 12 C 1.47204 * 109.46939 * 65.81040 * 10 9 8 13 13 N 8.92021 * 152.97752 * 321.86906 * 2 1 3 14 14 C 1.53003 * 109.47292 * 185.80860 * 10 9 8 15 15 C 1.50699 * 109.47112 * 175.00402 * 14 10 9 16 16 H 1.07996 * 120.00378 * 359.97438 * 15 14 10 17 17 C 1.37882 * 119.99878 * 180.02562 * 15 14 10 18 18 N 1.31517 * 119.99637 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99867 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47034 * 59.99770 * 19 17 15 21 21 H 1.48500 * 109.46843 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47156 * 299.99725 * 19 17 15 23 23 C 1.48825 * 104.23521 * 39.50850 * 8 7 5 24 24 C 1.54265 * 110.32175 * 108.97418 * 5 4 3 25 25 C 1.52999 * 110.32127 * 237.79626 * 24 5 4 26 26 C 1.53001 * 110.32250 * 359.89816 * 24 5 4 27 27 C 1.39871 * 107.92075 * 359.61242 * 4 3 2 28 28 N 1.30844 * 108.20023 * 0.23601 * 27 4 3 29 29 H 1.09003 * 109.47272 * 270.26442 * 1 2 3 30 30 H 1.08997 * 109.46697 * 30.26134 * 1 2 3 31 31 H 1.09002 * 109.47185 * 150.26073 * 1 2 3 32 32 H 1.08008 * 126.12096 * 359.97438 * 3 2 1 33 33 H 1.08997 * 110.41078 * 336.02973 * 7 5 4 34 34 H 1.08997 * 110.40854 * 98.35646 * 7 5 4 35 35 H 1.09003 * 109.47131 * 186.16315 * 9 8 7 36 36 H 1.09001 * 109.47080 * 306.16036 * 9 8 7 37 37 H 1.09001 * 109.46882 * 295.00598 * 14 10 9 38 38 H 1.09000 * 109.47027 * 55.00323 * 14 10 9 39 39 H 0.97003 * 119.99475 * 180.02562 * 18 17 15 40 40 H 1.08996 * 110.49450 * 201.75029 * 23 8 7 41 41 H 1.09002 * 110.44819 * 79.22473 * 23 8 7 42 42 H 1.09002 * 109.47159 * 181.42660 * 25 24 5 43 43 H 1.08997 * 109.47530 * 61.42685 * 25 24 5 44 44 H 1.09002 * 109.47404 * 301.42504 * 25 24 5 45 45 H 1.09001 * 109.47294 * 304.22419 * 26 24 5 46 46 H 1.08994 * 109.46865 * 64.22825 * 26 24 5 47 47 H 1.09000 * 109.47027 * 184.22451 * 26 24 5 48 48 H 1.07998 * 125.90362 * 180.26261 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5451 -0.0073 6 1 4.4940 2.5742 -0.2398 7 6 5.8018 1.0198 -1.0264 8 7 7.1181 1.2521 -0.3781 9 6 8.1523 0.3874 -0.9617 10 6 8.3908 0.7893 -2.4185 11 1 7.4439 0.7783 -2.9582 12 6 8.9669 2.1432 -2.4658 13 7 9.4114 3.1879 -2.5025 14 6 9.3599 -0.2003 -3.0685 15 6 9.4996 0.1225 -4.5339 16 1 8.9518 0.9504 -4.9592 17 6 10.3262 -0.6397 -5.3319 18 7 10.9930 -1.6482 -4.8141 19 14 10.4989 -0.2401 -7.1485 20 1 11.0235 1.1404 -7.3039 21 1 11.4395 -1.2005 -7.7793 22 1 9.1714 -0.3421 -7.8062 23 6 6.8861 0.9142 1.0526 24 6 5.4813 1.4763 1.3588 25 6 5.5902 2.8736 1.9724 26 6 4.7283 0.5387 2.3048 27 6 3.5347 -0.7322 0.0036 28 7 2.2891 -1.1328 0.0057 29 1 -0.3634 0.0047 1.0277 30 1 -0.3632 0.8876 -0.5179 31 1 -0.3634 -0.8923 -0.5098 32 1 1.9282 2.1193 -0.0004 33 1 5.6499 -0.0442 -1.2079 34 1 5.7322 1.5777 -1.9603 35 1 9.0787 0.4976 -0.3979 36 1 7.8233 -0.6510 -0.9205 37 1 10.3341 -0.1253 -2.5854 38 1 8.9749 -1.2137 -2.9548 39 1 11.5748 -2.1842 -5.3755 40 1 7.6336 1.3941 1.6841 41 1 6.9029 -0.1662 1.1962 42 1 6.1181 2.8124 2.9241 43 1 4.5912 3.2773 2.1364 44 1 6.1391 3.5267 1.2938 45 1 3.6924 0.8664 2.3926 46 1 4.7560 -0.4762 1.9085 47 1 5.2001 0.5582 3.2872 48 1 4.4054 -1.3711 0.0071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519760522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:38 Heat of formation + Delta-G solvation = 98.767771 kcal Electronic energy + Delta-G solvation = -26674.591796 eV Core-core repulsion = 23151.966381 eV Total energy + Delta-G solvation = -3522.625415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62037 -39.43929 -36.65327 -34.53783 -33.49123 -33.19668 -31.47488 -31.24778 -28.86496 -27.64820 -27.06858 -26.09272 -24.86193 -23.37992 -21.73814 -21.48222 -20.85651 -20.38889 -18.80770 -16.89474 -16.51950 -16.30759 -15.78239 -15.49738 -15.19267 -14.62942 -14.48021 -14.18306 -14.11588 -13.76013 -13.42970 -13.11024 -13.04868 -12.92071 -12.89430 -12.67646 -12.42248 -12.24539 -11.92018 -11.81987 -11.57310 -11.48234 -11.24671 -11.10082 -11.03476 -10.88774 -10.75641 -10.71673 -10.56024 -10.44871 -10.36864 -10.09742 -9.52165 -9.47839 -9.19491 -8.42717 -8.41498 -8.24118 -6.06666 -4.09575 1.74419 2.36076 2.66690 3.33266 3.37341 3.41189 3.79005 3.88831 4.10344 4.34006 4.44188 4.51395 4.65022 4.73916 4.81871 4.85460 4.95379 5.01536 5.08569 5.25475 5.31429 5.32913 5.34164 5.40961 5.56663 5.59048 5.59788 5.67192 5.74191 5.78472 5.85105 5.94889 5.97795 6.05331 6.06363 6.15783 6.22316 6.25353 6.37509 6.45981 6.51846 6.53898 6.83859 7.02560 7.22367 7.46178 7.56264 7.56804 7.88615 8.26680 8.64127 8.94942 9.55613 11.04242 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.003183 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.168023 B = 8793.271748 C = 9821.312347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.381 5.381 3 C 0.051 3.949 4 C -0.212 4.212 5 C -0.006 4.006 6 H 0.083 0.917 7 C 0.038 3.962 8 N -0.511 5.511 9 C 0.052 3.948 10 C 0.011 3.989 11 H 0.099 0.901 12 C 0.257 3.743 13 N -0.481 5.481 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.041 3.959 24 C -0.059 4.059 25 C -0.132 4.132 26 C -0.131 4.131 27 C 0.060 3.940 28 N -0.298 5.298 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.654 2.912 15.255 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.164 5.164 3 C -0.094 4.094 4 C -0.223 4.223 5 C -0.026 4.026 6 H 0.101 0.899 7 C -0.090 4.090 8 N -0.235 5.235 9 C -0.077 4.077 10 C -0.011 4.011 11 H 0.117 0.883 12 C -0.060 4.060 13 N -0.158 5.158 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.087 4.087 24 C -0.060 4.060 25 C -0.190 4.190 26 C -0.188 4.188 27 C -0.127 4.127 28 N -0.119 5.119 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.187 0.813 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.628 3.887 15.077 25.845 hybrid contribution 0.260 -0.419 -1.025 1.138 sum -20.368 3.469 14.052 24.987 Atomic orbital electron populations 1.21799 0.74527 1.04370 1.03071 1.48388 1.06425 1.03879 1.57708 1.22259 0.90835 0.93217 1.03127 1.19899 0.93895 0.93781 1.14773 1.20286 0.90455 0.97682 0.94195 0.89895 1.23212 0.88121 0.99927 0.97706 1.65506 1.05133 1.50763 1.02076 1.22393 0.95764 0.94819 0.94728 1.19204 1.00845 0.85725 0.95291 0.88343 1.28856 0.92066 0.93987 0.91083 1.80974 1.10870 1.13373 1.10551 1.19165 0.93382 0.92871 0.95250 1.21107 1.27002 1.14709 0.93572 0.92586 1.24947 0.95386 0.94924 0.98673 1.69932 1.28569 1.18520 1.36046 0.86664 0.78068 0.78267 0.85153 1.20220 1.21211 1.20068 1.23271 0.96200 0.98587 0.90632 1.21268 0.94203 0.95906 0.94597 1.21816 1.01151 0.95591 1.00413 1.21943 0.99630 0.99121 0.98133 1.23726 0.94948 0.94660 0.99333 1.77376 1.01698 1.08204 1.24627 0.91045 0.89663 0.89420 0.81294 0.93018 0.89930 0.90198 0.92707 0.95599 0.94513 0.92772 0.90296 0.93573 0.92941 0.93168 0.91773 0.92823 0.92388 0.93378 0.80392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.47 59.85 0.69 1.24 16 2 N -0.38 -3.59 4.01 -68.16 -0.27 -3.87 16 3 C 0.05 0.45 11.33 -17.23 -0.20 0.25 16 4 C -0.21 -2.10 3.24 -105.06 -0.34 -2.44 16 5 C -0.01 -0.06 3.13 -90.39 -0.28 -0.34 16 6 H 0.08 0.83 7.70 -51.93 -0.40 0.43 16 7 C 0.04 0.46 5.09 -2.18 -0.01 0.45 16 8 N -0.51 -6.82 5.13 -229.75 -1.18 -8.00 16 9 C 0.05 0.78 4.18 -3.83 -0.02 0.77 16 10 C 0.01 0.21 2.18 -93.41 -0.20 0.01 16 11 H 0.10 1.75 6.86 -51.93 -0.36 1.39 16 12 C 0.26 5.45 13.69 -20.76 -0.28 5.16 16 13 N -0.48 -11.05 18.54 42.15 0.78 -10.27 16 14 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -14.12 8.60 -34.44 -0.30 -14.42 16 16 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.04 0.46 5.60 -2.03 -0.01 0.44 16 24 C -0.06 -0.57 1.03 -153.12 -0.16 -0.73 16 25 C -0.13 -1.23 8.23 37.16 0.31 -0.92 16 26 C -0.13 -1.19 7.19 37.16 0.27 -0.92 16 27 C 0.06 0.66 8.83 -17.36 -0.15 0.50 16 28 N -0.30 -3.57 12.58 30.63 0.39 -3.18 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.05 0.62 6.47 -51.93 -0.34 0.28 16 34 H 0.08 1.08 7.57 -51.93 -0.39 0.68 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 0.76 7.96 -51.93 -0.41 0.35 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 41 H 0.05 0.49 7.62 -51.93 -0.40 0.10 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.51 7.26 -51.93 -0.38 0.13 16 46 H 0.06 0.55 5.82 -51.93 -0.30 0.25 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.18 1.78 7.46 -52.49 -0.39 1.39 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -32.40 386.03 -7.62 -40.02 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -7.96 Total: -3.33 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.91 Total: -8.68 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.45 Total: -50.30 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.40 -7.62 -40.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519760522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.787 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds