Wall clock time and date at job start Tue Mar 31 2020 11:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34945 * 126.04188 * 2 1 4 4 C 1.35308 * 107.75035 * 180.14648 * 3 2 1 5 5 C 1.50695 * 126.04311 * 179.86891 * 4 3 2 6 6 H 1.08999 * 110.28798 * 346.84968 * 5 4 3 7 7 C 1.54378 * 110.32717 * 224.60871 * 5 4 3 8 8 N 1.48562 * 104.59640 * 217.25044 * 7 5 4 9 9 C 1.46899 * 110.99953 * 159.04195 * 8 7 5 10 10 C 1.52994 * 109.47225 * 66.15899 * 9 8 7 11 11 H 1.09002 * 109.47295 * 305.81139 * 10 9 8 12 12 C 1.47204 * 109.46939 * 65.81040 * 10 9 8 13 13 N 8.92021 * 152.97752 * 321.86906 * 2 1 3 14 14 C 1.53003 * 109.47292 * 185.80860 * 10 9 8 15 15 C 1.50699 * 109.47112 * 175.00402 * 14 10 9 16 16 H 1.07996 * 120.00378 * 359.97438 * 15 14 10 17 17 C 1.37882 * 119.99878 * 180.02562 * 15 14 10 18 18 N 1.31517 * 119.99637 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99867 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47034 * 59.99770 * 19 17 15 21 21 H 1.48500 * 109.46843 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47156 * 299.99725 * 19 17 15 23 23 C 1.48825 * 104.23521 * 39.50850 * 8 7 5 24 24 C 1.54265 * 110.32175 * 108.97418 * 5 4 3 25 25 C 1.52999 * 110.32127 * 237.79626 * 24 5 4 26 26 C 1.53001 * 110.32250 * 359.89816 * 24 5 4 27 27 C 1.39871 * 107.92075 * 359.61242 * 4 3 2 28 28 N 1.30844 * 108.20023 * 0.23601 * 27 4 3 29 29 H 1.09003 * 109.47272 * 270.26442 * 1 2 3 30 30 H 1.08997 * 109.46697 * 30.26134 * 1 2 3 31 31 H 1.09002 * 109.47185 * 150.26073 * 1 2 3 32 32 H 1.08008 * 126.12096 * 359.97438 * 3 2 1 33 33 H 1.08997 * 110.41078 * 336.02973 * 7 5 4 34 34 H 1.08997 * 110.40854 * 98.35646 * 7 5 4 35 35 H 1.09003 * 109.47131 * 186.16315 * 9 8 7 36 36 H 1.09001 * 109.47080 * 306.16036 * 9 8 7 37 37 H 1.09001 * 109.46882 * 295.00598 * 14 10 9 38 38 H 1.09000 * 109.47027 * 55.00323 * 14 10 9 39 39 H 0.97003 * 119.99475 * 180.02562 * 18 17 15 40 40 H 1.08996 * 110.49450 * 201.75029 * 23 8 7 41 41 H 1.09002 * 110.44819 * 79.22473 * 23 8 7 42 42 H 1.09002 * 109.47159 * 181.42660 * 25 24 5 43 43 H 1.08997 * 109.47530 * 61.42685 * 25 24 5 44 44 H 1.09002 * 109.47404 * 301.42504 * 25 24 5 45 45 H 1.09001 * 109.47294 * 304.22419 * 26 24 5 46 46 H 1.08994 * 109.46865 * 64.22825 * 26 24 5 47 47 H 1.09000 * 109.47027 * 184.22451 * 26 24 5 48 48 H 1.07998 * 125.90362 * 180.26261 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5451 -0.0073 6 1 4.4940 2.5742 -0.2398 7 6 5.8018 1.0198 -1.0264 8 7 7.1181 1.2521 -0.3781 9 6 8.1523 0.3874 -0.9617 10 6 8.3908 0.7893 -2.4185 11 1 7.4439 0.7783 -2.9582 12 6 8.9669 2.1432 -2.4658 13 7 9.4114 3.1879 -2.5025 14 6 9.3599 -0.2003 -3.0685 15 6 9.4996 0.1225 -4.5339 16 1 8.9518 0.9504 -4.9592 17 6 10.3262 -0.6397 -5.3319 18 7 10.9930 -1.6482 -4.8141 19 14 10.4989 -0.2401 -7.1485 20 1 11.0235 1.1404 -7.3039 21 1 11.4395 -1.2005 -7.7793 22 1 9.1714 -0.3421 -7.8062 23 6 6.8861 0.9142 1.0526 24 6 5.4813 1.4763 1.3588 25 6 5.5902 2.8736 1.9724 26 6 4.7283 0.5387 2.3048 27 6 3.5347 -0.7322 0.0036 28 7 2.2891 -1.1328 0.0057 29 1 -0.3634 0.0047 1.0277 30 1 -0.3632 0.8876 -0.5179 31 1 -0.3634 -0.8923 -0.5098 32 1 1.9282 2.1193 -0.0004 33 1 5.6499 -0.0442 -1.2079 34 1 5.7322 1.5777 -1.9603 35 1 9.0787 0.4976 -0.3979 36 1 7.8233 -0.6510 -0.9205 37 1 10.3341 -0.1253 -2.5854 38 1 8.9749 -1.2137 -2.9548 39 1 11.5748 -2.1842 -5.3755 40 1 7.6336 1.3941 1.6841 41 1 6.9029 -0.1662 1.1962 42 1 6.1181 2.8124 2.9241 43 1 4.5912 3.2773 2.1364 44 1 6.1391 3.5267 1.2938 45 1 3.6924 0.8664 2.3926 46 1 4.7560 -0.4762 1.9085 47 1 5.2001 0.5582 3.2872 48 1 4.4054 -1.3711 0.0071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519760522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:37 Heat of formation + Delta-G solvation = 79.419060 kcal Electronic energy + Delta-G solvation = -26675.430819 eV Core-core repulsion = 23151.966381 eV Total energy + Delta-G solvation = -3523.464438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.35128 -40.36831 -38.17928 -35.95310 -35.10738 -34.03406 -33.01953 -32.11738 -29.72586 -28.66520 -28.26268 -26.77785 -26.14805 -24.50481 -23.56333 -22.42314 -21.65638 -21.18293 -19.62267 -18.48401 -18.04554 -17.46938 -16.73741 -16.51404 -16.20208 -16.13809 -15.27707 -15.22161 -15.13819 -14.75415 -14.56332 -14.40140 -14.09252 -13.93759 -13.83785 -13.65723 -13.60790 -13.40230 -13.19700 -13.04798 -12.95217 -12.72628 -12.55283 -12.46405 -12.39871 -12.28299 -12.08751 -11.81359 -11.72362 -11.60366 -11.40729 -11.27639 -11.15005 -11.01917 -10.54208 -10.23460 -9.31007 -9.09704 -8.18660 -6.26913 1.05909 1.41078 1.42841 1.49910 1.79447 1.90801 2.08428 2.15778 2.42057 3.08423 3.16834 3.37323 3.66442 3.71114 3.89727 4.09101 4.14266 4.22138 4.35479 4.37929 4.49195 4.50815 4.51272 4.60320 4.63695 4.72779 4.74527 4.77585 4.89130 4.90773 4.92798 4.93920 5.02412 5.06178 5.10670 5.19745 5.26762 5.38281 5.42374 5.47046 5.48352 5.60987 5.64185 5.77034 5.79722 6.04466 6.10233 6.23635 6.25885 6.83772 6.83839 6.94747 7.41417 8.92122 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.003183 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.168023 B = 8793.271748 C = 9821.312347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.383 5.383 3 C 0.059 3.941 4 C -0.224 4.224 5 C 0.004 3.996 6 H 0.087 0.913 7 C 0.036 3.964 8 N -0.522 5.522 9 C 0.062 3.938 10 C 0.023 3.977 11 H 0.112 0.888 12 C 0.267 3.733 13 N -0.513 5.513 14 C 0.039 3.961 15 C -0.540 4.540 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.280 1.280 21 H -0.281 1.281 22 H -0.263 1.263 23 C 0.040 3.960 24 C -0.052 4.052 25 C -0.129 4.129 26 C -0.121 4.121 27 C 0.051 3.949 28 N -0.336 5.336 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.201 0.799 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.001 0.999 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.620 3.659 15.720 27.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.165 5.165 3 C -0.087 4.087 4 C -0.236 4.236 5 C -0.016 4.016 6 H 0.105 0.895 7 C -0.092 4.092 8 N -0.246 5.246 9 C -0.067 4.067 10 C 0.002 3.998 11 H 0.129 0.871 12 C -0.049 4.049 13 N -0.190 5.190 14 C 0.000 4.000 15 C -0.578 4.578 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.773 3.227 20 H -0.206 1.206 21 H -0.207 1.207 22 H -0.188 1.188 23 C -0.087 4.087 24 C -0.053 4.053 25 C -0.186 4.186 26 C -0.179 4.179 27 C -0.134 4.134 28 N -0.158 5.158 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.103 0.897 32 H 0.218 0.782 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -22.619 4.630 15.550 27.836 hybrid contribution 0.818 -0.639 -1.150 1.549 sum -21.801 3.991 14.400 26.430 Atomic orbital electron populations 1.22124 0.72417 1.05613 1.04365 1.48719 1.07693 1.03387 1.56734 1.22749 0.90383 0.94353 1.01256 1.19865 0.94350 0.93231 1.16116 1.20168 0.90055 0.97758 0.93623 0.89490 1.23233 0.88155 0.99902 0.97864 1.65459 1.05322 1.50446 1.03379 1.22211 0.96556 0.95790 0.92166 1.19126 0.99744 0.83247 0.97732 0.87053 1.29299 0.91332 0.94249 0.90037 1.80968 1.11754 1.14489 1.11810 1.18981 0.93284 0.93896 0.93808 1.21519 1.26574 1.14299 0.95395 0.92870 1.25710 0.95350 0.94966 1.02678 1.70029 1.29355 1.19477 1.37437 0.85762 0.78540 0.77686 0.80692 1.20612 1.20668 1.18782 1.23330 0.97193 0.99112 0.89067 1.21220 0.93180 0.96283 0.94629 1.21777 1.01788 0.94854 1.00175 1.21841 0.99432 0.98505 0.98117 1.23806 0.94867 0.95320 0.99440 1.77311 1.02395 1.09964 1.26151 0.89716 0.86969 0.89676 0.78199 0.93000 0.91040 0.90552 0.91338 0.98022 0.94841 0.92702 0.90389 0.92976 0.92394 0.91847 0.93332 0.92887 0.92978 0.92768 0.80472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 11.47 127.77 1.47 2.25 16 2 N -0.38 -6.46 4.01 -369.56 -1.48 -7.94 16 3 C 0.06 0.88 11.33 83.54 0.95 1.82 16 4 C -0.22 -4.07 3.24 -20.15 -0.07 -4.13 16 5 C 0.00 0.08 3.13 -10.64 -0.03 0.04 16 6 H 0.09 1.56 7.70 -2.39 -0.02 1.54 16 7 C 0.04 0.84 5.09 86.45 0.44 1.28 16 8 N -0.52 -13.44 5.13 -880.78 -4.51 -17.96 16 9 C 0.06 1.83 4.18 86.30 0.36 2.19 16 10 C 0.02 0.86 2.18 -12.60 -0.03 0.84 16 11 H 0.11 3.88 6.86 -2.39 -0.02 3.87 16 12 C 0.27 11.29 13.69 89.44 1.22 12.52 16 13 N -0.51 -23.58 18.54 20.01 0.37 -23.20 16 14 C 0.04 1.84 4.42 29.85 0.13 1.97 16 15 C -0.54 -29.08 8.60 25.60 0.22 -28.86 16 16 H 0.05 2.84 7.59 -2.91 -0.02 2.81 16 17 C 0.01 0.66 5.46 84.66 0.46 1.12 16 18 N -0.92 -53.61 13.29 21.45 0.28 -53.33 16 19 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 23 C 0.04 0.85 5.60 86.40 0.48 1.33 16 24 C -0.05 -0.92 1.03 -51.29 -0.05 -0.97 16 25 C -0.13 -2.13 8.23 71.98 0.59 -1.53 16 26 C -0.12 -1.98 7.19 71.98 0.52 -1.46 16 27 C 0.05 1.08 8.83 85.24 0.75 1.83 16 28 N -0.34 -7.77 12.58 -57.02 -0.72 -8.49 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.05 1.20 6.47 -2.39 -0.02 1.19 16 34 H 0.07 1.81 7.57 -2.39 -0.02 1.79 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.07 1.83 7.96 -2.39 -0.02 1.81 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.08 1.65 7.86 -2.39 -0.02 1.64 16 41 H 0.05 1.04 7.62 -2.39 -0.02 1.02 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 0.88 7.26 -2.39 -0.02 0.86 16 46 H 0.05 0.92 5.82 -2.39 -0.01 0.91 16 47 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.18 3.52 7.46 -2.91 -0.02 3.50 16 Total: -1.00 -69.15 386.03 4.32 -64.83 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.93 Total: 9.87 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 7.42 Total: -9.75 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -6.06 Total: -110.92 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -69.15 4.32 -64.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519760522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.253 kcal (2) G-P(sol) polarization free energy of solvation -69.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds