Wall clock time and date at job start Tue Mar 31 2020 11:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.03675 * 2 1 4 4 C 1.35323 * 107.74537 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.03904 * 180.02562 * 4 3 2 6 6 H 1.09003 * 110.28779 * 2.12614 * 5 4 3 7 7 C 1.54379 * 110.32389 * 124.36442 * 5 4 3 8 8 N 1.48559 * 104.59218 * 142.74745 * 7 5 4 9 9 C 1.46900 * 110.99860 * 200.95991 * 8 7 5 10 10 C 1.53009 * 109.47209 * 305.42255 * 9 8 7 11 11 H 1.08999 * 109.46463 * 304.99812 * 10 9 8 12 12 C 1.47194 * 109.47151 * 64.99767 * 10 9 8 13 13 N 5.61472 * 136.46025 * 84.76211 * 2 1 3 14 14 C 1.53004 * 109.46846 * 185.00004 * 10 9 8 15 15 C 1.50700 * 109.46693 * 175.00085 * 14 10 9 16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 10 17 17 C 1.37881 * 119.99949 * 180.02562 * 15 14 10 18 18 N 1.31513 * 119.99607 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47189 * 60.00116 * 19 17 15 21 21 H 1.48500 * 109.47335 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47283 * 300.00335 * 19 17 15 23 23 C 1.48555 * 104.22647 * 320.51710 * 8 7 5 24 24 C 1.54264 * 110.32381 * 240.00328 * 5 4 3 25 25 C 1.52998 * 110.32155 * 0.02562 * 24 5 4 26 26 C 1.52995 * 110.32221 * 122.10693 * 24 5 4 27 27 C 1.39866 * 107.92159 * 0.02562 * 4 3 2 28 28 N 1.30841 * 108.19911 * 359.73793 * 27 4 3 29 29 H 1.09002 * 109.47391 * 89.99464 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99520 * 1 2 3 31 31 H 1.09004 * 109.47041 * 209.99647 * 1 2 3 32 32 H 1.08004 * 126.13243 * 359.96418 * 3 2 1 33 33 H 1.09002 * 110.41179 * 261.53153 * 7 5 4 34 34 H 1.09001 * 110.41059 * 23.96657 * 7 5 4 35 35 H 1.09005 * 109.47244 * 65.41743 * 9 8 7 36 36 H 1.08996 * 109.47527 * 185.42032 * 9 8 7 37 37 H 1.09000 * 109.47014 * 294.99436 * 14 10 9 38 38 H 1.08990 * 109.47256 * 55.00255 * 14 10 9 39 39 H 0.97000 * 119.99402 * 180.02562 * 18 17 15 40 40 H 1.09005 * 110.41376 * 280.70961 * 23 8 7 41 41 H 1.08996 * 110.51139 * 158.31078 * 23 8 7 42 42 H 1.08995 * 109.47569 * 60.00206 * 25 24 5 43 43 H 1.09000 * 109.47151 * 180.02562 * 25 24 5 44 44 H 1.09003 * 109.47361 * 299.99750 * 25 24 5 45 45 H 1.08995 * 109.47121 * 60.00106 * 26 24 5 46 46 H 1.09004 * 109.47078 * 179.97438 * 26 24 5 47 47 H 1.08998 * 109.47217 * 299.99591 * 26 24 5 48 48 H 1.08002 * 125.89933 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5453 0.0013 6 1 4.4793 2.5957 0.0393 7 6 5.6795 1.1939 1.1967 8 7 7.0608 1.3332 0.6679 9 6 8.0173 0.5786 1.4885 10 6 7.8900 1.0137 2.9499 11 1 8.0153 2.0942 3.0195 12 6 6.5604 0.6401 3.4591 13 7 5.5351 0.3531 3.8516 14 6 8.9690 0.3203 3.7842 15 6 8.9226 0.8408 5.1978 16 1 8.1966 1.5912 5.4734 17 6 9.8079 0.3595 6.1390 18 7 10.6923 -0.5540 5.8032 19 14 9.7509 1.0051 7.8909 20 1 8.4158 0.7258 8.4782 21 1 10.7980 0.3322 8.7008 22 1 9.9930 2.4702 7.8867 23 6 6.9832 0.7760 -0.7070 24 6 5.6257 1.2704 -1.2511 25 6 4.9732 0.1893 -2.1150 26 6 5.8112 2.5553 -2.0606 27 6 3.5347 -0.7321 0.0003 28 7 2.2891 -1.1327 0.0053 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8901 0.5138 32 1 1.9282 2.1194 -0.0005 33 1 5.5148 1.8911 2.0183 34 1 5.4993 0.1700 1.5241 35 1 7.8044 -0.4873 1.4070 36 1 9.0306 0.7745 1.1381 37 1 8.7910 -0.7551 3.7870 38 1 9.9490 0.5254 3.3536 39 1 11.3149 -0.8928 6.4655 40 1 7.0069 -0.3134 -0.6776 41 1 7.7999 1.1569 -1.3201 42 1 3.9836 0.5221 -2.4278 43 1 5.5900 0.0058 -2.9948 44 1 4.8815 -0.7309 -1.5379 45 1 6.3104 3.3036 -1.4450 46 1 6.4188 2.3456 -2.9409 47 1 4.8372 2.9322 -2.3723 48 1 4.4055 -1.3711 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519760523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:41 Heat of formation + Delta-G solvation = 113.733518 kcal Electronic energy + Delta-G solvation = -27035.712689 eV Core-core repulsion = 23513.736237 eV Total energy + Delta-G solvation = -3521.976451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58860 -39.56789 -36.88679 -34.50920 -33.52939 -33.15275 -31.54972 -31.19861 -28.73343 -27.78274 -27.08603 -25.99703 -24.80342 -23.46786 -21.81355 -21.30154 -20.79229 -20.38187 -18.76245 -16.93627 -16.63882 -16.43408 -15.67085 -15.52516 -15.05463 -14.73834 -14.43756 -14.27902 -14.03414 -13.62558 -13.57930 -13.16813 -12.95407 -12.90330 -12.80369 -12.57580 -12.34518 -12.31465 -12.15343 -11.85221 -11.71836 -11.41738 -11.16464 -11.05656 -10.94138 -10.86572 -10.70245 -10.61153 -10.50584 -10.36593 -10.32013 -10.19353 -9.50274 -9.41057 -9.20053 -8.42940 -8.36042 -8.22932 -6.07231 -4.10194 1.82188 2.43419 2.73565 3.32736 3.36845 3.40509 3.62654 3.68750 4.12682 4.39005 4.44051 4.53595 4.71150 4.76219 4.85742 4.87102 4.90071 5.04290 5.14287 5.27001 5.30731 5.35795 5.37148 5.42194 5.58362 5.61679 5.64655 5.70034 5.74362 5.76404 5.88139 5.96645 6.01921 6.06114 6.14680 6.20474 6.27111 6.28242 6.39595 6.41984 6.56668 6.58516 6.91522 7.00409 7.22334 7.46488 7.56076 7.63154 7.87755 8.25837 8.45720 8.94054 9.54984 11.03683 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.003315 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.914912 B = 8445.248617 C = 9511.083146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.381 5.381 3 C 0.052 3.948 4 C -0.213 4.213 5 C -0.006 4.006 6 H 0.082 0.918 7 C 0.034 3.966 8 N -0.509 5.509 9 C 0.052 3.948 10 C 0.005 3.995 11 H 0.109 0.891 12 C 0.245 3.755 13 N -0.477 5.477 14 C 0.033 3.967 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.040 3.960 24 C -0.059 4.059 25 C -0.138 4.138 26 C -0.131 4.131 27 C 0.063 3.937 28 N -0.299 5.299 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.096 0.904 37 H 0.024 0.976 38 H 0.040 0.960 39 H 0.263 0.737 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.077 4.715 -18.691 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.164 5.164 3 C -0.093 4.093 4 C -0.225 4.225 5 C -0.026 4.026 6 H 0.100 0.900 7 C -0.095 4.095 8 N -0.232 5.232 9 C -0.077 4.077 10 C -0.017 4.017 11 H 0.127 0.873 12 C -0.071 4.071 13 N -0.154 5.154 14 C -0.005 4.005 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.088 4.088 24 C -0.060 4.060 25 C -0.195 4.195 26 C -0.188 4.188 27 C -0.123 4.123 28 N -0.120 5.120 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.187 0.813 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.114 0.886 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -16.251 3.721 -18.001 24.535 hybrid contribution 0.681 0.221 1.073 1.290 sum -15.570 3.942 -16.927 23.335 Atomic orbital electron populations 1.21789 0.74552 1.04366 1.02992 1.48346 1.06384 1.03843 1.57839 1.22247 0.90797 0.93213 1.03036 1.19893 0.93926 0.93766 1.14888 1.20306 0.90560 0.97742 0.94038 0.89961 1.23551 0.88105 1.00918 0.96878 1.65500 1.05110 1.50765 1.01849 1.22424 0.97629 0.95655 0.91954 1.19339 0.86222 1.03182 0.92989 0.87291 1.29036 0.93946 0.92488 0.91600 1.81032 1.13609 1.09928 1.10852 1.19147 0.91808 0.95812 0.93764 1.21107 1.17432 1.23405 0.94473 0.92602 1.24946 0.95249 0.94879 0.98861 1.69929 1.19688 1.28760 1.34670 0.86663 0.77746 0.79208 0.84514 1.20299 1.21202 1.20007 1.23248 0.97126 0.97480 0.90938 1.21263 0.94118 0.95947 0.94677 1.22115 0.99975 0.98523 0.98931 1.21802 1.01109 0.96617 0.99312 1.23665 0.94842 0.94686 0.99119 1.77356 1.01616 1.08251 1.24802 0.91038 0.89693 0.89472 0.81274 0.89954 0.92930 0.94181 0.88598 0.95809 0.94215 0.92762 0.93799 0.89960 0.92803 0.93270 0.91892 0.91696 0.92890 0.93156 0.80579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 11.47 59.85 0.69 1.40 16 2 N -0.38 -4.33 4.01 -68.16 -0.27 -4.60 16 3 C 0.05 0.56 11.39 -17.22 -0.20 0.37 16 4 C -0.21 -2.59 3.59 -105.05 -0.38 -2.96 16 5 C -0.01 -0.07 3.12 -90.39 -0.28 -0.35 16 6 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 7 C 0.03 0.49 3.85 -2.18 -0.01 0.48 16 8 N -0.51 -6.95 5.49 -229.97 -1.26 -8.21 16 9 C 0.05 0.80 4.74 -3.82 -0.02 0.78 16 10 C 0.00 0.08 2.32 -93.40 -0.22 -0.13 16 11 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 12 C 0.25 5.02 9.72 -20.80 -0.20 4.82 16 13 N -0.48 -10.47 17.39 42.11 0.73 -9.74 16 14 C 0.03 0.78 4.42 -27.88 -0.12 0.65 16 15 C -0.53 -14.12 8.60 -34.44 -0.30 -14.41 16 16 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.04 0.46 5.59 -2.18 -0.01 0.44 16 24 C -0.06 -0.61 1.03 -153.13 -0.16 -0.77 16 25 C -0.14 -1.36 7.02 37.16 0.26 -1.10 16 26 C -0.13 -1.19 8.24 37.16 0.31 -0.88 16 27 C 0.06 0.84 8.69 -17.36 -0.15 0.69 16 28 N -0.30 -4.21 12.58 30.62 0.39 -3.83 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.08 1.35 6.43 -51.93 -0.33 1.01 16 34 H 0.05 0.87 5.62 -51.93 -0.29 0.58 16 35 H 0.04 0.62 7.88 -51.93 -0.41 0.21 16 36 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.04 0.51 7.51 -51.93 -0.39 0.12 16 41 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 42 H 0.05 0.56 7.54 -51.93 -0.39 0.16 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.66 4.69 -51.93 -0.24 0.42 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.18 2.22 7.03 -52.49 -0.37 1.85 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -31.97 378.64 -7.72 -39.69 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.84 Total: -1.19 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.88 Total: -9.33 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.32 Total: -51.34 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.97 -7.72 -39.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519760523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.427 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds