Wall clock time and date at job start Tue Mar 31 2020 11:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.03675 * 2 1 4 4 C 1.35323 * 107.74537 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.03904 * 180.02562 * 4 3 2 6 6 H 1.09003 * 110.28779 * 2.12614 * 5 4 3 7 7 C 1.54379 * 110.32389 * 124.36442 * 5 4 3 8 8 N 1.48559 * 104.59218 * 142.74745 * 7 5 4 9 9 C 1.46900 * 110.99860 * 200.95991 * 8 7 5 10 10 C 1.53009 * 109.47209 * 305.42255 * 9 8 7 11 11 H 1.08999 * 109.46463 * 304.99812 * 10 9 8 12 12 C 1.47194 * 109.47151 * 64.99767 * 10 9 8 13 13 N 5.61472 * 136.46025 * 84.76211 * 2 1 3 14 14 C 1.53004 * 109.46846 * 185.00004 * 10 9 8 15 15 C 1.50700 * 109.46693 * 175.00085 * 14 10 9 16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 10 17 17 C 1.37881 * 119.99949 * 180.02562 * 15 14 10 18 18 N 1.31513 * 119.99607 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47189 * 60.00116 * 19 17 15 21 21 H 1.48500 * 109.47335 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47283 * 300.00335 * 19 17 15 23 23 C 1.48555 * 104.22647 * 320.51710 * 8 7 5 24 24 C 1.54264 * 110.32381 * 240.00328 * 5 4 3 25 25 C 1.52998 * 110.32155 * 0.02562 * 24 5 4 26 26 C 1.52995 * 110.32221 * 122.10693 * 24 5 4 27 27 C 1.39866 * 107.92159 * 0.02562 * 4 3 2 28 28 N 1.30841 * 108.19911 * 359.73793 * 27 4 3 29 29 H 1.09002 * 109.47391 * 89.99464 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99520 * 1 2 3 31 31 H 1.09004 * 109.47041 * 209.99647 * 1 2 3 32 32 H 1.08004 * 126.13243 * 359.96418 * 3 2 1 33 33 H 1.09002 * 110.41179 * 261.53153 * 7 5 4 34 34 H 1.09001 * 110.41059 * 23.96657 * 7 5 4 35 35 H 1.09005 * 109.47244 * 65.41743 * 9 8 7 36 36 H 1.08996 * 109.47527 * 185.42032 * 9 8 7 37 37 H 1.09000 * 109.47014 * 294.99436 * 14 10 9 38 38 H 1.08990 * 109.47256 * 55.00255 * 14 10 9 39 39 H 0.97000 * 119.99402 * 180.02562 * 18 17 15 40 40 H 1.09005 * 110.41376 * 280.70961 * 23 8 7 41 41 H 1.08996 * 110.51139 * 158.31078 * 23 8 7 42 42 H 1.08995 * 109.47569 * 60.00206 * 25 24 5 43 43 H 1.09000 * 109.47151 * 180.02562 * 25 24 5 44 44 H 1.09003 * 109.47361 * 299.99750 * 25 24 5 45 45 H 1.08995 * 109.47121 * 60.00106 * 26 24 5 46 46 H 1.09004 * 109.47078 * 179.97438 * 26 24 5 47 47 H 1.08998 * 109.47217 * 299.99591 * 26 24 5 48 48 H 1.08002 * 125.89933 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5453 0.0013 6 1 4.4793 2.5957 0.0393 7 6 5.6795 1.1939 1.1967 8 7 7.0608 1.3332 0.6679 9 6 8.0173 0.5786 1.4885 10 6 7.8900 1.0137 2.9499 11 1 8.0153 2.0942 3.0195 12 6 6.5604 0.6401 3.4591 13 7 5.5351 0.3531 3.8516 14 6 8.9690 0.3203 3.7842 15 6 8.9226 0.8408 5.1978 16 1 8.1966 1.5912 5.4734 17 6 9.8079 0.3595 6.1390 18 7 10.6923 -0.5540 5.8032 19 14 9.7509 1.0051 7.8909 20 1 8.4158 0.7258 8.4782 21 1 10.7980 0.3322 8.7008 22 1 9.9930 2.4702 7.8867 23 6 6.9832 0.7760 -0.7070 24 6 5.6257 1.2704 -1.2511 25 6 4.9732 0.1893 -2.1150 26 6 5.8112 2.5553 -2.0606 27 6 3.5347 -0.7321 0.0003 28 7 2.2891 -1.1327 0.0053 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8901 0.5138 32 1 1.9282 2.1194 -0.0005 33 1 5.5148 1.8911 2.0183 34 1 5.4993 0.1700 1.5241 35 1 7.8044 -0.4873 1.4070 36 1 9.0306 0.7745 1.1381 37 1 8.7910 -0.7551 3.7870 38 1 9.9490 0.5254 3.3536 39 1 11.3149 -0.8928 6.4655 40 1 7.0069 -0.3134 -0.6776 41 1 7.7999 1.1569 -1.3201 42 1 3.9836 0.5221 -2.4278 43 1 5.5900 0.0058 -2.9948 44 1 4.8815 -0.7309 -1.5379 45 1 6.3104 3.3036 -1.4450 46 1 6.4188 2.3456 -2.9409 47 1 4.8372 2.9322 -2.3723 48 1 4.4055 -1.3711 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519760523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:40 Heat of formation + Delta-G solvation = 93.903980 kcal Electronic energy + Delta-G solvation = -27036.572562 eV Core-core repulsion = 23513.736237 eV Total energy + Delta-G solvation = -3522.836325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.48248 -40.62876 -38.32095 -35.97374 -35.17830 -34.07171 -33.10117 -32.22195 -29.71284 -28.78904 -28.38109 -26.80731 -26.13566 -24.64484 -23.63881 -22.32082 -21.77471 -21.30871 -19.64433 -18.52182 -18.33197 -17.54800 -16.92653 -16.43016 -16.29674 -16.08640 -15.57786 -15.41701 -14.92073 -14.88963 -14.72515 -14.36102 -14.14993 -13.91962 -13.89587 -13.77293 -13.64583 -13.45675 -13.34137 -13.11225 -12.98147 -12.65328 -12.64755 -12.45883 -12.32382 -12.17169 -12.11504 -11.91566 -11.70246 -11.50897 -11.43845 -11.35474 -11.22917 -11.03265 -10.54886 -10.29547 -9.42533 -9.18037 -8.19279 -6.27596 0.96060 1.40660 1.42187 1.49402 1.70513 1.79454 1.97893 2.01082 2.41410 3.04357 3.15699 3.26488 3.60298 3.64183 3.83142 3.97933 4.09421 4.15023 4.26736 4.34726 4.39158 4.42405 4.47453 4.53779 4.56860 4.65212 4.66476 4.78518 4.82987 4.88840 4.91802 4.93269 4.96534 5.02890 5.03412 5.17162 5.24755 5.35008 5.38417 5.44919 5.46700 5.61829 5.62095 5.65301 5.79095 5.92790 6.05386 6.17452 6.21874 6.72492 6.77566 6.87478 7.40713 8.91547 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.003315 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.914912 B = 8445.248617 C = 9511.083146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.059 3.941 4 C -0.229 4.229 5 C 0.002 3.998 6 H 0.092 0.908 7 C 0.037 3.963 8 N -0.505 5.505 9 C 0.061 3.939 10 C 0.016 3.984 11 H 0.121 0.879 12 C 0.255 3.745 13 N -0.505 5.505 14 C 0.041 3.959 15 C -0.540 4.540 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.282 1.282 21 H -0.281 1.281 22 H -0.262 1.262 23 C 0.038 3.962 24 C -0.052 4.052 25 C -0.130 4.130 26 C -0.126 4.126 27 C 0.052 3.948 28 N -0.338 5.338 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.205 0.795 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.034 0.966 36 H 0.114 0.886 37 H -0.003 1.003 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.040 0.960 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 6.616 -19.963 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.165 5.165 3 C -0.087 4.087 4 C -0.241 4.241 5 C -0.019 4.019 6 H 0.111 0.889 7 C -0.091 4.091 8 N -0.228 5.228 9 C -0.068 4.068 10 C -0.006 4.006 11 H 0.139 0.861 12 C -0.061 4.061 13 N -0.183 5.183 14 C 0.002 3.998 15 C -0.578 4.578 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.208 1.208 21 H -0.206 1.206 22 H -0.186 1.186 23 C -0.089 4.089 24 C -0.053 4.053 25 C -0.188 4.188 26 C -0.184 4.184 27 C -0.134 4.134 28 N -0.160 5.160 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.222 0.778 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.132 0.868 37 H 0.016 0.984 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.031 5.623 -19.285 26.336 hybrid contribution 0.849 -0.387 1.458 1.731 sum -16.182 5.236 -17.826 24.639 Atomic orbital electron populations 1.22148 0.72208 1.05560 1.04595 1.48711 1.07764 1.03276 1.56721 1.22798 0.90299 0.94488 1.01161 1.19976 0.94780 0.93211 1.16148 1.20254 0.90167 0.98127 0.93331 0.88930 1.23400 0.89364 0.98789 0.97579 1.65508 1.04295 1.50395 1.02648 1.22317 0.99140 0.95406 0.89950 1.19252 0.83693 1.03240 0.94408 0.86108 1.29356 0.94103 0.91741 0.90855 1.81019 1.14570 1.10820 1.11877 1.18960 0.93227 0.94423 0.93205 1.21516 1.16941 1.23105 0.96228 0.92881 1.25714 0.95154 0.95235 1.02630 1.70027 1.20479 1.29927 1.35872 0.85754 0.77386 0.79351 0.80131 1.20801 1.20647 1.18606 1.23365 0.98541 0.97420 0.89599 1.21232 0.92968 0.96831 0.94262 1.22023 0.99947 0.97787 0.99015 1.21763 1.01852 0.95430 0.99305 1.23687 0.94680 0.95482 0.99511 1.77274 1.02268 1.10129 1.26350 0.89203 0.86977 0.89846 0.77840 0.92047 0.95448 0.94804 0.86761 0.98440 0.94404 0.92689 0.94118 0.88299 0.93111 0.92090 0.93081 0.92205 0.91753 0.92228 0.81252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 11.47 127.77 1.47 2.58 16 2 N -0.38 -8.19 4.01 -369.55 -1.48 -9.67 16 3 C 0.06 1.15 11.39 83.54 0.95 2.10 16 4 C -0.23 -5.39 3.59 -20.14 -0.07 -5.46 16 5 C 0.00 0.03 3.12 -10.64 -0.03 0.00 16 6 H 0.09 1.87 7.69 -2.39 -0.02 1.85 16 7 C 0.04 1.07 3.85 86.45 0.33 1.41 16 8 N -0.51 -13.24 5.49 -881.48 -4.84 -18.08 16 9 C 0.06 1.82 4.74 86.31 0.41 2.23 16 10 C 0.02 0.59 2.32 -12.60 -0.03 0.56 16 11 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 12 C 0.25 10.60 9.72 89.45 0.87 11.47 16 13 N -0.51 -22.63 17.39 19.99 0.35 -22.28 16 14 C 0.04 1.92 4.42 29.85 0.13 2.05 16 15 C -0.54 -29.12 8.60 25.60 0.22 -28.90 16 16 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 17 C 0.01 0.65 5.46 84.66 0.46 1.11 16 18 N -0.92 -53.69 13.29 21.45 0.28 -53.40 16 19 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 23 C 0.04 0.81 5.59 86.45 0.48 1.29 16 24 C -0.05 -0.98 1.03 -51.29 -0.05 -1.03 16 25 C -0.13 -2.38 7.02 71.98 0.51 -1.88 16 26 C -0.13 -1.92 8.24 71.98 0.59 -1.32 16 27 C 0.05 1.40 8.69 85.23 0.74 2.14 16 28 N -0.34 -9.59 12.58 -57.02 -0.72 -10.31 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.06 2.02 6.43 -2.39 -0.02 2.00 16 34 H 0.03 0.93 5.62 -2.39 -0.01 0.92 16 35 H 0.03 1.05 7.88 -2.38 -0.02 1.03 16 36 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.83 16 40 H 0.04 0.90 7.51 -2.38 -0.02 0.88 16 41 H 0.10 1.80 7.86 -2.39 -0.02 1.78 16 42 H 0.05 0.96 7.54 -2.39 -0.02 0.95 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 1.07 4.69 -2.39 -0.01 1.06 16 45 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.17 4.57 7.03 -2.91 -0.02 4.55 16 Total: -1.00 -69.43 378.64 3.54 -65.90 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.94 Total: 13.52 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 6.98 Total: -11.66 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -6.41 Total: -113.75 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.43 3.54 -65.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519760523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.799 kcal (2) G-P(sol) polarization free energy of solvation -69.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds