Wall clock time and date at job start Tue Mar 31 2020 10:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00331 * 2 1 4 4 H 1.48500 * 109.47145 * 240.00160 * 3 2 1 5 5 H 1.48495 * 109.47038 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47272 * 120.00342 * 3 2 1 7 7 C 1.37879 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99878 * 359.71777 * 7 2 1 10 10 N 1.46898 * 109.46931 * 175.08938 * 9 7 2 11 11 C 1.46900 * 111.00044 * 75.62376 * 10 9 7 12 12 C 1.50708 * 109.46737 * 189.99651 * 11 10 9 13 13 C 1.38601 * 120.72118 * 269.71585 * 12 11 10 14 14 N 1.32275 * 119.19455 * 179.78896 * 13 12 11 15 15 C 1.32497 * 120.74298 * 0.47934 * 14 13 12 16 16 N 1.38400 * 119.22106 * 179.75279 * 15 14 13 17 17 C 1.48537 * 111.00208 * 242.62683 * 16 15 14 18 18 C 1.54930 * 103.22739 * 159.71911 * 17 16 15 19 19 C 1.54598 * 102.92421 * 322.58089 * 18 17 16 20 20 C 1.47911 * 110.99913 * 0.02562 * 16 15 14 21 21 N 1.32495 * 121.56214 * 359.77568 * 15 14 13 22 22 C 1.32281 * 120.74261 * 359.97438 * 21 15 14 23 23 C 1.46902 * 110.99814 * 199.57580 * 10 9 7 24 24 C 1.52999 * 109.47117 * 74.91236 * 23 10 9 25 25 C 1.53000 * 117.50035 * 243.43432 * 24 23 10 26 26 C 1.53006 * 60.00285 * 252.51094 * 25 24 23 27 27 H 0.97003 * 119.99165 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47166 * 295.09139 * 9 7 2 29 29 H 1.09004 * 109.47114 * 55.08937 * 9 7 2 30 30 H 1.08999 * 109.47316 * 309.99426 * 11 10 9 31 31 H 1.08996 * 109.47042 * 70.00045 * 11 10 9 32 32 H 1.07998 * 120.40367 * 0.02562 * 13 12 11 33 33 H 1.08996 * 110.66588 * 278.15651 * 17 16 15 34 34 H 1.09002 * 110.66422 * 41.28333 * 17 16 15 35 35 H 1.09008 * 110.72166 * 204.22843 * 18 17 16 36 36 H 1.09001 * 110.72789 * 80.94359 * 18 17 16 37 37 H 1.08994 * 110.31240 * 263.04689 * 19 18 17 38 38 H 1.09008 * 110.30747 * 140.87250 * 19 18 17 39 39 H 1.08998 * 109.91382 * 333.50831 * 20 16 15 40 40 H 1.08997 * 109.91277 * 94.80143 * 20 16 15 41 41 H 1.07996 * 120.39867 * 180.02562 * 22 21 15 42 42 H 1.09002 * 109.47528 * 194.91362 * 23 10 9 43 43 H 1.09003 * 109.47324 * 314.91529 * 23 10 9 44 44 H 1.09000 * 115.55002 * 29.15111 * 24 23 10 45 45 H 1.08993 * 117.50026 * 0.02562 * 25 24 23 46 46 H 1.09002 * 117.49399 * 145.02310 * 25 24 23 47 47 H 1.08993 * 117.49792 * 252.51491 * 26 25 24 48 48 H 1.08998 * 117.49682 * 107.48459 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 0.0053 10 7 2.2006 -3.6134 -0.1151 11 6 2.9034 -3.8455 1.1538 12 6 4.0323 -4.8191 0.9320 13 6 3.8295 -6.1827 1.0745 14 7 4.8405 -7.0104 0.8684 15 6 6.0378 -6.5483 0.5388 16 7 7.0746 -7.4422 0.3356 17 6 8.1653 -7.2253 1.3202 18 6 8.9343 -8.5701 1.2995 19 6 7.8034 -9.6127 1.1439 20 6 6.6205 -8.8354 0.5373 21 7 6.2661 -5.2506 0.3996 22 6 5.2971 -4.3697 0.5867 23 6 1.5242 -4.8344 -0.5732 24 6 1.2143 -4.7159 -2.0667 25 6 -0.2574 -4.7155 -2.4851 26 6 0.6167 -5.9401 -2.7635 27 1 -0.4849 0.8401 0.0004 28 1 0.6958 -2.5940 0.9386 29 1 0.5563 -2.5214 -0.8344 30 1 3.3047 -2.9024 1.5247 31 1 2.2073 -4.2568 1.8848 32 1 2.8569 -6.5652 1.3468 33 1 8.8123 -6.4072 1.0035 34 1 7.7557 -7.0315 2.3116 35 1 9.4721 -8.7213 2.2355 36 1 9.6165 -8.6114 0.4504 37 1 7.5289 -10.0211 2.1165 38 1 8.1155 -10.4119 0.4715 39 1 5.7733 -8.8541 1.2228 40 1 6.3378 -9.2758 -0.4188 41 1 5.4893 -3.3132 0.4713 42 1 2.1723 -5.6942 -0.4036 43 1 0.5949 -4.9649 -0.0186 44 1 1.9015 -4.0952 -2.6417 45 1 -1.0049 -4.7992 -1.6963 46 1 -0.5387 -4.0942 -3.3353 47 1 0.9104 -6.1242 -3.7969 48 1 0.4443 -6.8297 -2.1578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537636394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:43 Heat of formation + Delta-G solvation = 98.877609 kcal Electronic energy + Delta-G solvation = -26447.329552 eV Core-core repulsion = 22924.708900 eV Total energy + Delta-G solvation = -3522.620652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.23471 -38.87532 -37.73585 -35.67712 -33.61827 -33.26611 -32.37092 -30.37107 -29.17248 -27.71186 -26.43575 -24.59891 -24.10103 -22.76313 -21.97563 -21.43607 -21.00780 -20.71725 -19.64477 -17.90721 -17.48320 -16.41900 -16.07326 -15.61807 -15.20229 -14.92431 -14.68919 -14.65239 -14.17536 -13.87160 -13.82965 -13.41303 -13.17336 -13.04065 -12.63866 -12.44597 -12.34488 -12.02261 -11.77895 -11.55350 -11.42919 -11.32386 -11.18541 -10.91984 -10.85914 -10.80789 -10.70323 -10.60864 -10.39736 -10.10496 -9.88106 -9.85339 -9.41437 -9.23327 -8.96725 -8.44125 -8.30945 -7.36407 -6.04080 -4.05583 1.08216 1.26405 3.22750 3.32220 3.36965 3.39573 3.82654 4.12389 4.19799 4.33779 4.41245 4.57675 4.67603 4.80535 4.86359 4.95639 5.05698 5.12420 5.16083 5.20623 5.27927 5.31405 5.32805 5.52255 5.53962 5.56085 5.62181 5.74901 5.80616 5.82148 5.89070 5.92984 5.94518 6.00207 6.13108 6.22190 6.24920 6.29766 6.40312 6.45464 6.50726 6.76170 6.83367 7.18459 7.25986 7.31351 7.77258 8.06379 8.13167 8.25008 8.48269 9.00980 9.58567 11.06286 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.003334 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.411963 B = 8396.991850 C = 9905.004297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.528 5.528 11 C 0.109 3.891 12 C -0.188 4.188 13 C 0.166 3.834 14 N -0.552 5.552 15 C 0.468 3.532 16 N -0.447 5.447 17 C 0.054 3.946 18 C -0.125 4.125 19 C -0.132 4.132 20 C 0.038 3.962 21 N -0.524 5.524 22 C 0.189 3.811 23 C 0.082 3.918 24 C -0.128 4.128 25 C -0.176 4.176 26 C -0.190 4.190 27 H 0.261 0.739 28 H -0.011 1.011 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.034 0.966 32 H 0.162 0.838 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.174 0.826 42 H 0.061 0.939 43 H 0.027 0.973 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.686 -17.154 2.965 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.252 5.252 11 C -0.020 4.020 12 C -0.194 4.194 13 C 0.000 4.000 14 N -0.271 5.271 15 C 0.111 3.889 16 N -0.168 5.168 17 C -0.072 4.072 18 C -0.163 4.163 19 C -0.171 4.171 20 C -0.089 4.089 21 N -0.241 5.241 22 C 0.022 3.978 23 C -0.047 4.047 24 C -0.146 4.146 25 C -0.213 4.213 26 C -0.227 4.227 27 H 0.071 0.929 28 H 0.006 0.994 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.052 0.948 32 H 0.179 0.821 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.191 0.809 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.128 0.872 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.836 -17.478 1.930 21.197 hybrid contribution -1.397 1.302 1.168 2.238 sum 10.439 -16.176 3.098 19.500 Atomic orbital electron populations 1.69944 1.06037 1.26854 1.50912 1.24965 0.94828 0.99208 0.95474 0.86600 0.79475 0.82907 0.78661 1.20167 1.21448 1.20282 1.21104 0.93421 0.89885 1.50110 0.91990 1.19788 0.90105 0.86939 0.96186 1.62145 1.31219 1.04990 1.26855 1.20795 0.92055 0.97305 0.91860 1.21706 0.98097 0.96362 1.03204 1.22923 0.96792 0.89370 0.90936 1.68191 1.01156 1.40489 1.17252 1.21079 0.88893 0.88274 0.90620 1.61326 1.06400 1.02715 1.46316 1.23202 0.91821 0.99267 0.92882 1.22538 0.97607 0.93463 1.02660 1.22458 0.95031 0.98306 1.01266 1.22927 0.98059 0.85430 1.02472 1.68048 1.36383 1.01719 1.17950 1.23100 0.87178 0.99661 0.87889 1.21673 0.96449 0.93556 0.92995 1.22220 0.96137 0.99984 0.96302 1.22956 0.94360 1.00634 1.03394 1.22931 1.06063 0.92690 1.01064 0.92897 0.99369 0.94029 0.88487 0.94778 0.82119 0.88617 0.93156 0.90471 0.90256 0.91167 0.90652 0.89796 0.89924 0.80926 0.92123 0.95442 0.87171 0.89192 0.89155 0.89393 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.50 8.61 -34.44 -0.30 -13.79 16 8 H 0.06 1.62 7.64 -52.49 -0.40 1.22 16 9 C 0.19 4.75 4.57 -4.98 -0.02 4.73 16 10 N -0.53 -10.51 4.35 -237.51 -1.03 -11.54 16 11 C 0.11 1.88 4.98 -4.97 -0.02 1.85 16 12 C -0.19 -2.90 4.96 -104.35 -0.52 -3.41 16 13 C 0.17 2.39 9.19 -17.23 -0.16 2.23 16 14 N -0.55 -8.25 8.15 -13.93 -0.11 -8.36 16 15 C 0.47 7.20 6.98 -322.81 -2.25 4.95 16 16 N -0.45 -5.90 5.35 -171.42 -0.92 -6.82 16 17 C 0.05 0.58 6.31 -1.90 -0.01 0.57 16 18 C -0.12 -0.96 7.06 -24.87 -0.18 -1.14 16 19 C -0.13 -1.03 6.93 -25.37 -0.18 -1.21 16 20 C 0.04 0.42 6.34 -2.75 -0.02 0.40 16 21 N -0.52 -8.49 10.21 -13.93 -0.14 -8.63 16 22 C 0.19 2.96 11.00 -17.22 -0.19 2.77 16 23 C 0.08 1.42 5.10 -3.82 -0.02 1.40 16 24 C -0.13 -2.20 5.12 -90.62 -0.46 -2.66 16 25 C -0.18 -2.81 10.08 -26.73 -0.27 -3.08 16 26 C -0.19 -2.70 10.25 -26.72 -0.27 -2.97 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H -0.01 -0.30 8.00 -51.93 -0.42 -0.71 16 29 H 0.04 1.11 7.18 -51.93 -0.37 0.73 16 30 H 0.10 1.78 7.26 -51.93 -0.38 1.40 16 31 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.16 1.96 7.69 -52.49 -0.40 1.55 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.55 7.99 -51.93 -0.42 0.14 16 35 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.08 0.99 6.46 -51.93 -0.34 0.66 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.17 2.51 8.06 -52.49 -0.42 2.09 16 42 H 0.06 0.97 5.05 -51.93 -0.26 0.71 16 43 H 0.03 0.48 7.74 -51.93 -0.40 0.08 16 44 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 45 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 46 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -29.97 384.08 -13.68 -43.65 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.01 Total: 2.94 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -4.97 Total: -7.91 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -1.47 Total: -60.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.97 -13.68 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537636394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.528 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds