Wall clock time and date at job start Tue Mar 31 2020 10:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48496 * 109.47218 * 270.00176 * 3 2 1 5 5 H 1.48506 * 109.47152 * 30.00343 * 3 2 1 6 6 H 1.48504 * 109.47154 * 150.00234 * 3 2 1 7 7 C 1.38814 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99906 * 131.01374 * 7 2 1 9 9 N 1.36935 * 120.00085 * 311.01717 * 7 2 1 10 10 C 1.46501 * 120.00142 * 34.17200 * 9 7 2 11 11 C 1.50700 * 109.46983 * 81.90131 * 10 9 7 12 12 C 1.38598 * 120.72706 * 268.02824 * 11 10 9 13 13 N 1.32279 * 119.20019 * 179.78750 * 12 11 10 14 14 C 1.32498 * 120.73615 * 0.47382 * 13 12 11 15 15 N 1.38406 * 119.21515 * 179.75446 * 14 13 12 16 16 C 1.48534 * 111.00068 * 242.62713 * 15 14 13 17 17 C 1.54936 * 103.22842 * 159.72067 * 16 15 14 18 18 C 1.54595 * 102.91873 * 322.58434 * 17 16 15 19 19 C 1.47903 * 110.99914 * 0.02562 * 15 14 13 20 20 N 1.32491 * 121.56821 * 359.77767 * 14 13 12 21 21 C 1.32276 * 120.73727 * 359.97359 * 20 14 13 22 22 C 1.46495 * 120.00215 * 214.17861 * 9 7 2 23 23 C 1.54269 * 110.03245 * 302.08991 * 22 9 7 24 24 C 1.54959 * 104.16089 * 95.75175 * 23 22 9 25 25 C 1.54890 * 102.78057 * 37.88951 * 24 23 22 26 26 C 1.53882 * 110.03431 * 59.30521 * 22 9 7 27 27 H 0.97003 * 119.99771 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47737 * 201.90554 * 10 9 7 29 29 H 1.09004 * 109.47348 * 321.90909 * 10 9 7 30 30 H 1.08002 * 120.39897 * 359.97438 * 12 11 10 31 31 H 1.09004 * 110.66005 * 278.15538 * 16 15 14 32 32 H 1.08999 * 110.66647 * 41.28229 * 16 15 14 33 33 H 1.08999 * 110.72450 * 204.22346 * 17 16 15 34 34 H 1.09002 * 110.72069 * 80.93896 * 17 16 15 35 35 H 1.09000 * 110.30758 * 263.04045 * 18 17 16 36 36 H 1.09003 * 110.30628 * 140.87513 * 18 17 16 37 37 H 1.09000 * 109.91962 * 333.51330 * 19 15 14 38 38 H 1.09006 * 109.91425 * 94.80256 * 19 15 14 39 39 H 1.08006 * 120.39674 * 180.02562 * 21 20 14 40 40 H 1.08998 * 110.01933 * 180.69563 * 22 9 7 41 41 H 1.09001 * 110.48572 * 214.40011 * 23 22 9 42 42 H 1.08997 * 110.48250 * 337.04472 * 23 22 9 43 43 H 1.09000 * 110.72561 * 279.57952 * 24 23 22 44 44 H 1.09004 * 110.92637 * 156.29713 * 24 23 22 45 45 H 1.08995 * 110.49389 * 203.40302 * 25 24 23 46 46 H 1.09003 * 110.59910 * 80.81576 * 25 24 23 47 47 H 1.09000 * 110.02697 * 359.95217 * 26 22 9 48 48 H 1.08997 * 110.03521 * 121.38259 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 2.8118 -1.3626 -0.7064 9 7 1.6786 -2.1847 0.8938 10 6 0.2827 -2.3640 1.3007 11 6 -0.4438 -3.1754 0.2591 12 6 -1.1154 -2.5533 -0.7816 13 7 -1.7396 -3.2950 -1.6816 14 6 -1.7351 -4.6169 -1.5906 15 7 -2.4028 -5.3621 -2.5470 16 6 -3.5098 -6.1420 -1.9367 17 6 -4.4273 -6.4596 -3.1442 18 6 -4.3463 -5.1675 -3.9891 19 6 -3.0357 -4.4849 -3.5557 20 7 -1.1072 -5.2422 -0.6057 21 6 -0.4597 -4.5598 0.3242 22 6 2.7196 -3.0563 1.4438 23 6 3.4574 -3.7844 0.3012 24 6 4.7095 -2.9095 0.0404 25 6 5.1175 -2.4617 1.4659 26 6 3.7746 -2.2154 2.1840 27 1 -0.4850 0.8401 0.0004 28 1 0.2471 -2.8853 2.2573 29 1 -0.1949 -1.3893 1.4001 30 1 -1.1264 -1.4761 -0.8584 31 1 -3.1315 -7.0609 -1.4888 32 1 -4.0407 -5.5425 -1.1973 33 1 -5.4501 -6.6413 -2.8141 34 1 -4.0448 -7.3121 -3.7055 35 1 -5.1980 -4.5217 -3.7753 36 1 -4.3126 -5.4114 -5.0509 37 1 -3.2518 -3.5106 -3.1174 38 1 -2.3749 -4.3702 -4.4149 39 1 0.0507 -5.0753 1.1244 40 1 2.2765 -3.7829 2.1248 41 1 3.7507 -4.7865 0.6141 42 1 2.8306 -3.8299 -0.5894 43 1 4.4563 -2.0480 -0.5774 44 1 5.5039 -3.4950 -0.4227 45 1 5.7021 -1.5427 1.4245 46 1 5.6803 -3.2483 1.9687 47 1 3.5123 -1.1586 2.1331 48 1 3.8434 -2.5338 3.2241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539822365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:46 Heat of formation + Delta-G solvation = 91.954025 kcal Electronic energy + Delta-G solvation = -27480.774764 eV Core-core repulsion = 23957.853883 eV Total energy + Delta-G solvation = -3522.920881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.53223 -38.38793 -37.76313 -34.65066 -32.92013 -32.48198 -31.35643 -29.64297 -28.81153 -27.92925 -26.91096 -25.54940 -23.72896 -23.19417 -21.78963 -20.79276 -20.38335 -19.92700 -19.11625 -17.37915 -16.82958 -16.61427 -15.70514 -15.38058 -14.70626 -14.53438 -14.34293 -14.17874 -13.82122 -13.51222 -13.36397 -13.08639 -12.79454 -12.65126 -12.52194 -12.23182 -12.00766 -11.69823 -11.35676 -11.29137 -11.12920 -10.86929 -10.77075 -10.58211 -10.50000 -10.43484 -10.34537 -10.27133 -10.18322 -9.96577 -9.90329 -9.80907 -9.70226 -9.34184 -8.29685 -8.11461 -7.67701 -6.92419 -6.36857 -3.25052 1.79821 2.04102 3.29613 3.45014 3.52572 3.75388 4.36079 4.51368 4.61422 4.73930 4.84088 4.95178 5.15152 5.31619 5.38737 5.40696 5.43277 5.46126 5.49966 5.70983 5.75646 5.77918 5.82609 5.91600 6.00348 6.04191 6.07831 6.08560 6.22083 6.22747 6.29148 6.32343 6.38132 6.48364 6.56792 6.59544 6.65886 6.73653 6.75441 6.91523 7.02794 7.06296 7.22041 7.25359 7.46673 7.55855 7.88142 7.99793 8.30355 8.94141 9.03099 9.66634 10.27628 10.74349 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.004066 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.096542 B = 6884.488820 C = 7919.195747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.061 3.939 3 Si 0.833 3.167 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.284 4.284 8 H 0.080 0.920 9 N -0.581 5.581 10 C 0.178 3.822 11 C -0.186 4.186 12 C 0.186 3.814 13 N -0.559 5.559 14 C 0.443 3.557 15 N -0.448 5.448 16 C 0.056 3.944 17 C -0.124 4.124 18 C -0.132 4.132 19 C 0.039 3.961 20 N -0.537 5.537 21 C 0.143 3.857 22 C 0.181 3.819 23 C -0.134 4.134 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.131 4.131 27 H 0.264 0.736 28 H 0.030 0.970 29 H 0.109 0.891 30 H 0.206 0.794 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.150 0.850 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.081 0.919 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 -8.024 -0.158 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.140 4.140 3 Si 0.659 3.341 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.409 4.409 8 H 0.098 0.902 9 N -0.300 5.300 10 C 0.052 3.948 11 C -0.194 4.194 12 C 0.020 3.980 13 N -0.278 5.278 14 C 0.086 3.914 15 N -0.169 5.169 16 C -0.071 4.071 17 C -0.162 4.162 18 C -0.170 4.170 19 C -0.088 4.088 20 N -0.255 5.255 21 C -0.024 4.024 22 C 0.073 3.927 23 C -0.174 4.174 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.170 4.170 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.127 0.873 30 H 0.222 0.778 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.167 0.833 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.599 -8.802 -1.082 9.990 hybrid contribution 0.719 1.787 0.727 2.059 sum -3.880 -7.015 -0.354 8.024 Atomic orbital electron populations 1.69834 1.06803 1.27004 1.45222 1.25241 0.94299 0.97692 0.96804 0.87357 0.82553 0.86195 0.78041 1.21518 1.21409 1.20248 1.18824 1.17953 0.90125 1.14047 0.90206 1.44282 0.99464 1.36555 1.49739 1.20680 0.85016 0.99298 0.89785 1.22645 0.98961 0.95289 1.02511 1.24307 0.85327 1.02770 0.85563 1.68363 1.23334 1.05834 1.30301 1.20972 0.94443 0.86408 0.89568 1.61363 1.23881 1.21602 1.10063 1.23134 0.89726 0.98207 0.96049 1.22523 0.99194 0.98258 0.96244 1.22450 0.97527 0.96685 1.00331 1.22873 0.94229 0.96838 0.94880 1.67802 1.11953 1.41380 1.04361 1.22814 0.93092 0.91692 0.94772 1.20921 0.88892 0.90615 0.92265 1.22822 0.97106 0.97011 1.00432 1.22501 0.96595 0.99755 0.96806 1.22237 0.97419 0.99546 0.96333 1.22602 0.94489 1.02845 0.97103 0.92590 0.95132 0.87320 0.77764 0.89167 0.93512 0.90828 0.90554 0.91348 0.90960 0.89690 0.90299 0.83274 0.93067 0.93447 0.91829 0.90671 0.93651 0.92860 0.93194 0.90075 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.32 8.06 55.49 0.45 -19.87 16 2 C 0.06 1.48 5.12 -17.43 -0.09 1.40 16 3 Si 0.83 19.02 29.69 -169.99 -5.05 13.97 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.28 -6.77 7.73 -15.06 -0.12 -6.88 16 8 H 0.08 2.00 5.57 -52.48 -0.29 1.71 16 9 N -0.58 -12.46 2.41 -165.75 -0.40 -12.86 16 10 C 0.18 3.70 5.42 -5.19 -0.03 3.67 16 11 C -0.19 -3.86 5.42 -104.35 -0.57 -4.42 16 12 C 0.19 4.10 10.76 -17.23 -0.19 3.91 16 13 N -0.56 -11.91 8.15 -13.93 -0.11 -12.02 16 14 C 0.44 8.98 6.98 -322.80 -2.25 6.73 16 15 N -0.45 -7.75 5.35 -171.42 -0.92 -8.67 16 16 C 0.06 0.78 6.31 -1.90 -0.01 0.77 16 17 C -0.12 -1.33 7.06 -24.87 -0.18 -1.50 16 18 C -0.13 -1.47 6.93 -25.37 -0.18 -1.65 16 19 C 0.04 0.60 6.34 -2.75 -0.02 0.58 16 20 N -0.54 -10.90 10.21 -13.93 -0.14 -11.04 16 21 C 0.14 2.78 11.01 -17.22 -0.19 2.59 16 22 C 0.18 3.37 3.48 -66.81 -0.23 3.14 16 23 C -0.13 -2.43 6.01 -25.03 -0.15 -2.58 16 24 C -0.12 -2.05 6.52 -24.70 -0.16 -2.21 16 25 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 26 C -0.13 -2.32 6.28 -25.61 -0.16 -2.48 16 27 H 0.26 6.14 8.31 -40.82 -0.34 5.80 16 28 H 0.03 0.57 7.75 -51.93 -0.40 0.17 16 29 H 0.11 2.49 5.35 -51.93 -0.28 2.21 16 30 H 0.21 4.79 5.21 -52.49 -0.27 4.52 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.69 7.99 -51.93 -0.42 0.27 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.43 6.46 -51.93 -0.34 1.10 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.15 2.52 8.06 -52.48 -0.42 2.10 16 40 H 0.05 0.89 7.73 -51.93 -0.40 0.49 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.33 7.97 -51.93 -0.41 0.92 16 43 H 0.07 1.45 6.10 -51.93 -0.32 1.13 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 1.65 7.34 -51.93 -0.38 1.27 16 48 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -25.61 366.78 -13.05 -38.66 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.72 Total: 7.30 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -4.68 Total: -1.00 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -1.13 Total: -64.46 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.05 Total: 13.97 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -25.61 -13.05 -38.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539822365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.612 kcal (2) G-P(sol) polarization free energy of solvation -25.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds