Wall clock time and date at job start Tue Mar 31 2020 10:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48496 * 109.47218 * 270.00176 * 3 2 1 5 5 H 1.48506 * 109.47152 * 30.00343 * 3 2 1 6 6 H 1.48504 * 109.47154 * 150.00234 * 3 2 1 7 7 C 1.38814 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99906 * 131.01374 * 7 2 1 9 9 N 1.36935 * 120.00085 * 311.01717 * 7 2 1 10 10 C 1.46501 * 120.00142 * 34.17200 * 9 7 2 11 11 C 1.50700 * 109.46983 * 81.90131 * 10 9 7 12 12 C 1.38598 * 120.72706 * 268.02824 * 11 10 9 13 13 N 1.32279 * 119.20019 * 179.78750 * 12 11 10 14 14 C 1.32498 * 120.73615 * 0.47382 * 13 12 11 15 15 N 1.38406 * 119.21515 * 179.75446 * 14 13 12 16 16 C 1.48534 * 111.00068 * 242.62713 * 15 14 13 17 17 C 1.54936 * 103.22842 * 159.72067 * 16 15 14 18 18 C 1.54595 * 102.91873 * 322.58434 * 17 16 15 19 19 C 1.47903 * 110.99914 * 0.02562 * 15 14 13 20 20 N 1.32491 * 121.56821 * 359.77767 * 14 13 12 21 21 C 1.32276 * 120.73727 * 359.97359 * 20 14 13 22 22 C 1.46495 * 120.00215 * 214.17861 * 9 7 2 23 23 C 1.54269 * 110.03245 * 302.08991 * 22 9 7 24 24 C 1.54959 * 104.16089 * 95.75175 * 23 22 9 25 25 C 1.54890 * 102.78057 * 37.88951 * 24 23 22 26 26 C 1.53882 * 110.03431 * 59.30521 * 22 9 7 27 27 H 0.97003 * 119.99771 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47737 * 201.90554 * 10 9 7 29 29 H 1.09004 * 109.47348 * 321.90909 * 10 9 7 30 30 H 1.08002 * 120.39897 * 359.97438 * 12 11 10 31 31 H 1.09004 * 110.66005 * 278.15538 * 16 15 14 32 32 H 1.08999 * 110.66647 * 41.28229 * 16 15 14 33 33 H 1.08999 * 110.72450 * 204.22346 * 17 16 15 34 34 H 1.09002 * 110.72069 * 80.93896 * 17 16 15 35 35 H 1.09000 * 110.30758 * 263.04045 * 18 17 16 36 36 H 1.09003 * 110.30628 * 140.87513 * 18 17 16 37 37 H 1.09000 * 109.91962 * 333.51330 * 19 15 14 38 38 H 1.09006 * 109.91425 * 94.80256 * 19 15 14 39 39 H 1.08006 * 120.39674 * 180.02562 * 21 20 14 40 40 H 1.08998 * 110.01933 * 180.69563 * 22 9 7 41 41 H 1.09001 * 110.48572 * 214.40011 * 23 22 9 42 42 H 1.08997 * 110.48250 * 337.04472 * 23 22 9 43 43 H 1.09000 * 110.72561 * 279.57952 * 24 23 22 44 44 H 1.09004 * 110.92637 * 156.29713 * 24 23 22 45 45 H 1.08995 * 110.49389 * 203.40302 * 25 24 23 46 46 H 1.09003 * 110.59910 * 80.81576 * 25 24 23 47 47 H 1.09000 * 110.02697 * 359.95217 * 26 22 9 48 48 H 1.08997 * 110.03521 * 121.38259 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 2.8118 -1.3626 -0.7064 9 7 1.6786 -2.1847 0.8938 10 6 0.2827 -2.3640 1.3007 11 6 -0.4438 -3.1754 0.2591 12 6 -1.1154 -2.5533 -0.7816 13 7 -1.7396 -3.2950 -1.6816 14 6 -1.7351 -4.6169 -1.5906 15 7 -2.4028 -5.3621 -2.5470 16 6 -3.5098 -6.1420 -1.9367 17 6 -4.4273 -6.4596 -3.1442 18 6 -4.3463 -5.1675 -3.9891 19 6 -3.0357 -4.4849 -3.5557 20 7 -1.1072 -5.2422 -0.6057 21 6 -0.4597 -4.5598 0.3242 22 6 2.7196 -3.0563 1.4438 23 6 3.4574 -3.7844 0.3012 24 6 4.7095 -2.9095 0.0404 25 6 5.1175 -2.4617 1.4659 26 6 3.7746 -2.2154 2.1840 27 1 -0.4850 0.8401 0.0004 28 1 0.2471 -2.8853 2.2573 29 1 -0.1949 -1.3893 1.4001 30 1 -1.1264 -1.4761 -0.8584 31 1 -3.1315 -7.0609 -1.4888 32 1 -4.0407 -5.5425 -1.1973 33 1 -5.4501 -6.6413 -2.8141 34 1 -4.0448 -7.3121 -3.7055 35 1 -5.1980 -4.5217 -3.7753 36 1 -4.3126 -5.4114 -5.0509 37 1 -3.2518 -3.5106 -3.1174 38 1 -2.3749 -4.3702 -4.4149 39 1 0.0507 -5.0753 1.1244 40 1 2.2765 -3.7829 2.1248 41 1 3.7507 -4.7865 0.6141 42 1 2.8306 -3.8299 -0.5894 43 1 4.4563 -2.0480 -0.5774 44 1 5.5039 -3.4950 -0.4227 45 1 5.7021 -1.5427 1.4245 46 1 5.6803 -3.2483 1.9687 47 1 3.5123 -1.1586 2.1331 48 1 3.8434 -2.5338 3.2241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539822365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:45 Heat of formation + Delta-G solvation = 81.589879 kcal Electronic energy + Delta-G solvation = -27481.224187 eV Core-core repulsion = 23957.853883 eV Total energy + Delta-G solvation = -3523.370304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.04184 -39.73649 -39.17319 -36.23610 -34.50518 -33.96856 -32.96596 -31.07250 -29.92243 -29.33249 -28.44712 -27.18457 -25.29374 -24.74575 -23.22718 -22.01074 -21.63697 -21.29260 -20.67415 -18.80907 -18.37191 -18.27237 -17.06705 -16.76749 -16.23597 -15.98661 -15.90283 -15.75492 -15.30057 -14.93628 -14.72735 -14.69378 -14.21876 -14.16940 -13.89113 -13.47615 -13.37560 -13.16724 -13.02001 -12.58034 -12.46542 -12.27399 -12.19766 -12.11459 -11.96276 -11.86645 -11.77642 -11.71387 -11.58151 -11.52938 -11.35616 -11.30948 -11.20265 -10.79368 -9.99456 -9.86604 -9.19542 -8.62194 -8.20769 -5.08251 0.23393 0.40499 1.41489 1.55600 1.63489 2.39654 2.52805 2.91920 2.99308 3.38810 3.61084 3.78488 3.86540 4.00198 4.01993 4.03690 4.10893 4.18701 4.29612 4.33360 4.40141 4.51637 4.53628 4.73996 4.80250 4.81076 4.87717 4.94410 4.94496 4.97674 5.01617 5.05094 5.06075 5.12459 5.16064 5.24492 5.27613 5.33674 5.41642 5.48096 5.56150 5.63460 5.67731 5.74759 5.82100 5.93716 6.07705 6.40672 6.49714 7.22481 7.35380 7.93095 8.48134 8.88870 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.004066 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.096542 B = 6884.488820 C = 7919.195747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.031 3.969 3 Si 0.872 3.128 4 H -0.300 1.300 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.279 4.279 8 H 0.063 0.937 9 N -0.589 5.589 10 C 0.184 3.816 11 C -0.194 4.194 12 C 0.169 3.831 13 N -0.573 5.573 14 C 0.438 3.562 15 N -0.458 5.458 16 C 0.052 3.948 17 C -0.112 4.112 18 C -0.123 4.123 19 C 0.035 3.965 20 N -0.545 5.545 21 C 0.151 3.849 22 C 0.173 3.827 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.111 4.111 26 C -0.128 4.128 27 H 0.262 0.738 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.188 0.812 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.180 0.820 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 -10.492 0.441 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.169 4.169 3 Si 0.699 3.301 4 H -0.228 1.228 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.406 4.406 8 H 0.081 0.919 9 N -0.309 5.309 10 C 0.058 3.942 11 C -0.202 4.202 12 C 0.003 3.997 13 N -0.292 5.292 14 C 0.081 3.919 15 N -0.180 5.180 16 C -0.074 4.074 17 C -0.150 4.150 18 C -0.161 4.161 19 C -0.092 4.092 20 N -0.263 5.263 21 C -0.016 4.016 22 C 0.066 3.934 23 C -0.166 4.166 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.167 4.167 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.204 0.796 31 H 0.110 0.890 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.197 0.803 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.674 -11.276 -0.487 12.216 hybrid contribution 0.741 2.485 0.495 2.640 sum -3.933 -8.791 0.008 9.631 Atomic orbital electron populations 1.69936 1.06809 1.26846 1.45938 1.25520 0.94737 0.98729 0.97936 0.86783 0.81563 0.84884 0.76912 1.22786 1.21802 1.20879 1.18725 1.17037 0.90954 1.13910 0.91921 1.44387 1.00456 1.36756 1.49328 1.20502 0.84488 0.98459 0.90793 1.22604 0.99375 0.95987 1.02193 1.24114 0.86554 1.02322 0.86707 1.68376 1.23769 1.06583 1.30491 1.21435 0.94336 0.86289 0.89872 1.61459 1.25136 1.21581 1.09824 1.23266 0.89297 0.97413 0.97396 1.22539 0.99860 0.98135 0.94435 1.22441 0.95340 0.96734 1.01587 1.22935 0.96171 0.96182 0.93948 1.67914 1.12338 1.41321 1.04689 1.23228 0.92159 0.91179 0.94985 1.21169 0.88683 0.90757 0.92771 1.22727 0.96720 0.98460 0.98697 1.22462 0.96957 0.98799 0.97448 1.22219 0.96825 1.00496 0.95291 1.22532 0.94954 1.00569 0.98665 0.92817 0.92667 0.89723 0.79623 0.89012 0.94469 0.88091 0.89422 0.90197 0.88895 0.91920 0.90993 0.80301 0.91043 0.90854 0.95350 0.93732 0.91556 0.92979 0.90235 0.93367 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.43 8.06 21.65 0.17 -42.25 16 2 C 0.03 1.57 5.12 84.86 0.43 2.00 16 3 Si 0.87 40.40 29.69 68.60 2.04 42.44 16 4 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.28 -13.67 7.73 84.03 0.65 -13.02 16 8 H 0.06 3.28 5.57 -2.91 -0.02 3.26 16 9 N -0.59 -25.29 2.41 -678.31 -1.63 -26.92 16 10 C 0.18 7.61 5.42 85.63 0.46 8.07 16 11 C -0.19 -8.07 5.42 -19.69 -0.11 -8.18 16 12 C 0.17 7.67 10.76 84.71 0.91 8.58 16 13 N -0.57 -25.08 8.15 -197.99 -1.61 -26.69 16 14 C 0.44 17.78 6.98 261.48 1.83 19.61 16 15 N -0.46 -15.60 5.35 -696.24 -3.73 -19.33 16 16 C 0.05 1.39 6.31 86.65 0.55 1.93 16 17 C -0.11 -2.04 7.06 31.80 0.22 -1.81 16 18 C -0.12 -2.45 6.93 31.47 0.22 -2.23 16 19 C 0.03 1.05 6.34 86.45 0.55 1.60 16 20 N -0.54 -21.69 10.21 -197.98 -2.02 -23.71 16 21 C 0.15 5.72 11.01 84.71 0.93 6.65 16 22 C 0.17 6.17 3.48 45.72 0.16 6.32 16 23 C -0.13 -4.40 6.01 31.69 0.19 -4.21 16 24 C -0.12 -3.96 6.52 31.91 0.21 -3.75 16 25 C -0.11 -3.30 6.83 31.67 0.22 -3.08 16 26 C -0.13 -4.28 6.28 31.32 0.20 -4.09 16 27 H 0.26 12.66 8.31 -92.71 -0.77 11.89 16 28 H 0.06 1.97 7.75 -2.39 -0.02 1.95 16 29 H 0.08 3.96 5.35 -2.38 -0.01 3.94 16 30 H 0.19 9.17 5.21 -2.91 -0.02 9.16 16 31 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.04 1.05 7.99 -2.39 -0.02 1.03 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.06 2.16 6.46 -2.39 -0.02 2.14 16 38 H 0.07 2.19 8.14 -2.38 -0.02 2.18 16 39 H 0.18 5.56 8.06 -2.91 -0.02 5.54 16 40 H 0.07 2.26 7.73 -2.39 -0.02 2.24 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.03 1.17 7.97 -2.39 -0.02 1.15 16 43 H 0.04 1.74 6.10 -2.39 -0.01 1.73 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.05 1.94 7.34 -2.39 -0.02 1.92 16 48 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -57.33 366.78 1.78 -55.55 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.95 Total: 26.51 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 7.62 Total: 14.40 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -8.82 Total: -138.90 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.04 Total: 42.44 kcal Total: -57.33 1.78 -55.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539822365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.142 kcal (2) G-P(sol) polarization free energy of solvation -57.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds