Wall clock time and date at job start Tue Mar 31 2020 11:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00114 * 2 1 4 4 H 1.48510 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47236 * 300.00038 * 3 2 1 6 6 H 1.48493 * 109.47273 * 60.00283 * 3 2 1 7 7 C 1.37877 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99761 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.53116 * 109.52284 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.27562 * 177.55911 * 10 9 7 12 12 N 1.46845 * 109.52522 * 300.81525 * 11 10 9 13 13 C 1.38530 * 111.00166 * 185.84274 * 12 11 10 14 14 C 1.39680 * 120.48735 * 179.72592 * 13 12 11 15 15 C 1.38082 * 118.49200 * 180.29527 * 14 13 12 16 16 N 1.32519 * 119.29109 * 359.97181 * 15 14 13 17 17 C 1.32468 * 120.93130 * 0.02562 * 16 15 14 18 18 N 1.38401 * 119.17201 * 179.97438 * 17 16 15 19 19 C 1.46846 * 110.99784 * 124.23033 * 18 17 16 20 20 C 1.53038 * 109.52622 * 174.15670 * 19 18 17 21 21 C 1.53123 * 109.27232 * 59.17734 * 20 19 18 22 22 C 1.53112 * 109.16489 * 302.34637 * 21 20 19 23 23 C 1.46840 * 111.00138 * 0.02562 * 18 17 16 24 24 N 1.32460 * 121.64834 * 0.02562 * 17 16 15 25 25 C 1.46846 * 111.19599 * 61.74322 * 12 11 10 26 26 C 1.53032 * 109.52536 * 298.26102 * 25 12 11 27 27 H 0.97008 * 119.99751 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.57459 * 59.84563 * 9 7 2 29 29 H 1.08997 * 109.50809 * 57.61713 * 10 9 7 30 30 H 1.08998 * 109.50199 * 297.49743 * 10 9 7 31 31 H 1.09003 * 109.45903 * 180.79768 * 11 10 9 32 32 H 1.09004 * 109.46358 * 60.83792 * 11 10 9 33 33 H 1.08006 * 120.75330 * 0.24996 * 14 13 12 34 34 H 1.08004 * 120.35491 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.46496 * 294.17878 * 19 18 17 36 36 H 1.09002 * 109.46354 * 54.14098 * 19 18 17 37 37 H 1.08999 * 109.50425 * 299.24155 * 20 19 18 38 38 H 1.09000 * 109.50489 * 179.11869 * 20 19 18 39 39 H 1.09005 * 109.51667 * 182.44117 * 21 20 19 40 40 H 1.08997 * 109.57553 * 62.28948 * 21 20 19 41 41 H 1.09000 * 109.50323 * 297.71513 * 22 21 20 42 42 H 1.08996 * 109.53753 * 177.61448 * 22 21 20 43 43 H 1.08999 * 109.46218 * 305.84990 * 23 18 17 44 44 H 1.08999 * 109.46445 * 65.83828 * 23 18 17 45 45 H 1.09003 * 109.46328 * 58.27306 * 25 12 11 46 46 H 1.08997 * 109.46108 * 178.23965 * 25 12 11 47 47 H 1.09004 * 109.50420 * 299.23978 * 26 25 12 48 48 H 1.09002 * 109.50575 * 179.11998 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2448 -3.6639 -0.0005 11 6 1.4749 -4.9851 0.0610 12 7 0.6542 -5.0186 1.2782 13 6 0.0448 -6.2531 1.4323 14 6 -0.7798 -6.5041 2.5314 15 6 -1.3614 -7.7511 2.6474 16 7 -1.1230 -8.6665 1.7194 17 6 -0.3366 -8.4008 0.6870 18 7 -0.1120 -9.3842 -0.2607 19 6 -0.4692 -8.9114 -1.6043 20 6 -0.0734 -9.9665 -2.6398 21 6 -0.8013 -11.2774 -2.3293 22 6 -0.4502 -11.7226 -0.9070 23 6 -0.8351 -10.6165 0.0781 24 7 0.2411 -7.2180 0.5396 25 6 -0.3395 -3.9374 1.2786 26 6 0.3762 -2.5850 1.2533 27 1 -0.4850 0.8401 0.0004 28 1 0.6212 -2.5572 -0.8883 29 1 2.8997 -3.5836 0.8671 30 1 2.8419 -3.6327 -0.9119 31 1 2.1802 -5.8160 0.0754 32 1 0.8306 -5.0710 -0.8140 33 1 -0.9577 -5.7405 3.2742 34 1 -2.0039 -7.9779 3.4854 35 1 -1.5442 -8.7384 -1.6546 36 1 0.0583 -7.9809 -1.8141 37 1 1.0035 -10.1299 -2.5995 38 1 -0.3529 -9.6220 -3.6354 39 1 -0.4893 -12.0440 -3.0385 40 1 -1.8777 -11.1249 -2.4079 41 1 0.6208 -11.9136 -0.8395 42 1 -0.9982 -12.6330 -0.6643 43 1 -0.5732 -10.9246 1.0904 44 1 -1.9084 -10.4356 0.0196 45 1 -0.9753 -4.0282 0.3979 46 1 -0.9521 -4.0075 2.1774 47 1 1.0017 -2.4876 2.1407 48 1 -0.3618 -1.7829 1.2378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546757301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:26 Heat of formation + Delta-G solvation = 61.011976 kcal Electronic energy + Delta-G solvation = -26937.355999 eV Core-core repulsion = 23413.093369 eV Total energy + Delta-G solvation = -3524.262629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25768 -39.28018 -37.98595 -34.67650 -33.93839 -32.69600 -31.38472 -31.04374 -29.94798 -29.60544 -26.08845 -25.24898 -24.09125 -23.01364 -22.74378 -21.72982 -21.34089 -19.93229 -18.81534 -17.89845 -17.26263 -16.49048 -15.98922 -15.47125 -15.17109 -14.80465 -14.70184 -14.55542 -14.19345 -14.09410 -13.78009 -13.50342 -13.40400 -13.26745 -12.86099 -12.60119 -12.37505 -12.34888 -11.59546 -11.45658 -11.23876 -11.09322 -11.00117 -10.77213 -10.71958 -10.69292 -10.63132 -10.48270 -10.32027 -10.17132 -10.10747 -9.55783 -9.13449 -8.98411 -8.83271 -8.55046 -8.36783 -7.98231 -6.03580 -4.08522 1.16305 1.33417 3.07651 3.27635 3.36139 3.40302 3.85311 3.92857 4.31085 4.41404 4.53659 4.66596 4.66695 4.86362 4.99532 5.08025 5.15151 5.26909 5.35000 5.37463 5.41169 5.49750 5.55086 5.61155 5.68442 5.71314 5.76146 5.80537 5.89440 5.92960 5.94300 6.05095 6.10935 6.21478 6.25663 6.30631 6.50794 6.62041 6.71325 6.75598 6.94243 7.03279 7.20315 7.30599 7.46943 7.52975 7.70270 7.93670 8.03859 8.36653 8.40767 8.95180 9.56533 11.03032 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023410 B = 0.002903 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.796573 B = 9641.352353 C =10399.181769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.046 3.954 10 C -0.111 4.111 11 C 0.071 3.929 12 N -0.466 5.466 13 C 0.390 3.610 14 C -0.277 4.277 15 C 0.180 3.820 16 N -0.584 5.584 17 C 0.513 3.487 18 N -0.460 5.460 19 C 0.067 3.933 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.121 4.121 23 C 0.073 3.927 24 N -0.568 5.568 25 C 0.064 3.936 26 C -0.107 4.107 27 H 0.259 0.741 28 H 0.024 0.976 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.040 0.960 46 H 0.068 0.932 47 H 0.048 0.952 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.736 -20.131 0.076 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.027 3.973 10 C -0.149 4.149 11 C -0.055 4.055 12 N -0.181 5.181 13 C 0.147 3.853 14 C -0.304 4.304 15 C 0.016 3.984 16 N -0.307 5.307 17 C 0.155 3.845 18 N -0.180 5.180 19 C -0.059 4.059 20 C -0.155 4.155 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.055 4.055 24 N -0.293 5.293 25 C -0.061 4.061 26 C -0.145 4.145 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.873 -20.659 -0.272 21.021 hybrid contribution -0.729 1.628 0.296 1.808 sum -4.602 -19.031 0.024 19.580 Atomic orbital electron populations 1.69863 1.05884 1.26339 1.51127 1.24971 0.94863 0.99099 0.95100 0.86555 0.80208 0.83831 0.77528 1.19792 1.21109 1.21057 1.21218 0.93000 0.90444 1.50058 0.92542 1.18729 0.92739 0.92011 0.93813 1.21789 0.98855 0.93369 1.00912 1.22093 0.95811 0.99660 0.87986 1.58917 1.21147 0.99817 1.38260 1.20217 0.85965 0.90780 0.88329 1.22206 1.05735 1.00725 1.01731 1.22710 0.93141 0.87832 0.94682 1.68313 1.19662 1.36444 1.06288 1.20734 0.86491 0.87214 0.90103 1.58363 1.54913 1.02927 1.01776 1.22171 0.99182 0.99465 0.85081 1.21633 1.01613 0.94505 0.97779 1.21627 1.00254 0.97421 0.96863 1.21680 1.02395 0.97368 0.94398 1.21986 0.96180 0.87359 0.99932 1.67970 1.28377 1.02027 1.30944 1.22536 0.91978 0.91292 1.00269 1.21783 1.00590 0.92113 1.00041 0.93067 0.95793 0.92382 0.92382 0.90906 0.93798 0.83705 0.81853 0.94108 0.88698 0.90651 0.90823 0.91551 0.92114 0.91009 0.90997 0.89481 0.93252 0.94184 0.91323 0.93289 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 11.37 55.43 0.63 -24.04 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.60 8.56 -34.44 -0.29 -13.89 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.10 2.16 -91.65 -0.20 0.90 16 10 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 11 C 0.07 1.33 4.67 -3.83 -0.02 1.31 16 12 N -0.47 -8.53 4.68 -173.07 -0.81 -9.34 16 13 C 0.39 6.66 6.40 -154.84 -0.99 5.67 16 14 C -0.28 -3.97 9.27 -39.10 -0.36 -4.33 16 15 C 0.18 2.30 11.28 -17.31 -0.20 2.11 16 16 N -0.58 -8.48 8.67 -14.02 -0.12 -8.60 16 17 C 0.51 8.02 7.17 -322.89 -2.32 5.70 16 18 N -0.46 -6.16 4.72 -175.45 -0.83 -6.99 16 19 C 0.07 0.80 5.33 -3.83 -0.02 0.78 16 20 C -0.12 -1.07 6.09 -26.65 -0.16 -1.23 16 21 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 22 C -0.12 -1.01 6.09 -26.65 -0.16 -1.17 16 23 C 0.07 0.80 4.63 -3.83 -0.02 0.78 16 24 N -0.57 -9.76 8.06 -13.16 -0.11 -9.86 16 25 C 0.06 1.19 5.25 -3.84 -0.02 1.17 16 26 C -0.11 -2.39 5.12 -26.65 -0.14 -2.53 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.34 7.72 -51.93 -0.40 0.94 16 32 H 0.04 0.85 8.12 -51.93 -0.42 0.42 16 33 H 0.15 1.83 7.23 -52.48 -0.38 1.45 16 34 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.29 7.55 -51.93 -0.39 0.90 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 1.01 7.68 -51.93 -0.40 0.61 16 44 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.07 1.13 6.75 -51.93 -0.35 0.78 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.10 2.51 6.17 -51.93 -0.32 2.19 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -28.82 368.15 -14.12 -42.94 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.12 Total: 1.24 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -5.29 Total: -6.78 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -1.23 Total: -58.83 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.82 -14.12 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546757301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.953 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds