Wall clock time and date at job start Tue Mar 31 2020 11:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00114 * 2 1 4 4 H 1.48510 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47236 * 300.00038 * 3 2 1 6 6 H 1.48493 * 109.47273 * 60.00283 * 3 2 1 7 7 C 1.37877 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99761 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.53116 * 109.52284 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.27562 * 177.55911 * 10 9 7 12 12 N 1.46845 * 109.52522 * 300.81525 * 11 10 9 13 13 C 1.38530 * 111.00166 * 185.84274 * 12 11 10 14 14 C 1.39680 * 120.48735 * 179.72592 * 13 12 11 15 15 C 1.38082 * 118.49200 * 180.29527 * 14 13 12 16 16 N 1.32519 * 119.29109 * 359.97181 * 15 14 13 17 17 C 1.32468 * 120.93130 * 0.02562 * 16 15 14 18 18 N 1.38401 * 119.17201 * 179.97438 * 17 16 15 19 19 C 1.46846 * 110.99784 * 124.23033 * 18 17 16 20 20 C 1.53038 * 109.52622 * 174.15670 * 19 18 17 21 21 C 1.53123 * 109.27232 * 59.17734 * 20 19 18 22 22 C 1.53112 * 109.16489 * 302.34637 * 21 20 19 23 23 C 1.46840 * 111.00138 * 0.02562 * 18 17 16 24 24 N 1.32460 * 121.64834 * 0.02562 * 17 16 15 25 25 C 1.46846 * 111.19599 * 61.74322 * 12 11 10 26 26 C 1.53032 * 109.52536 * 298.26102 * 25 12 11 27 27 H 0.97008 * 119.99751 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.57459 * 59.84563 * 9 7 2 29 29 H 1.08997 * 109.50809 * 57.61713 * 10 9 7 30 30 H 1.08998 * 109.50199 * 297.49743 * 10 9 7 31 31 H 1.09003 * 109.45903 * 180.79768 * 11 10 9 32 32 H 1.09004 * 109.46358 * 60.83792 * 11 10 9 33 33 H 1.08006 * 120.75330 * 0.24996 * 14 13 12 34 34 H 1.08004 * 120.35491 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.46496 * 294.17878 * 19 18 17 36 36 H 1.09002 * 109.46354 * 54.14098 * 19 18 17 37 37 H 1.08999 * 109.50425 * 299.24155 * 20 19 18 38 38 H 1.09000 * 109.50489 * 179.11869 * 20 19 18 39 39 H 1.09005 * 109.51667 * 182.44117 * 21 20 19 40 40 H 1.08997 * 109.57553 * 62.28948 * 21 20 19 41 41 H 1.09000 * 109.50323 * 297.71513 * 22 21 20 42 42 H 1.08996 * 109.53753 * 177.61448 * 22 21 20 43 43 H 1.08999 * 109.46218 * 305.84990 * 23 18 17 44 44 H 1.08999 * 109.46445 * 65.83828 * 23 18 17 45 45 H 1.09003 * 109.46328 * 58.27306 * 25 12 11 46 46 H 1.08997 * 109.46108 * 178.23965 * 25 12 11 47 47 H 1.09004 * 109.50420 * 299.23978 * 26 25 12 48 48 H 1.09002 * 109.50575 * 179.11998 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2448 -3.6639 -0.0005 11 6 1.4749 -4.9851 0.0610 12 7 0.6542 -5.0186 1.2782 13 6 0.0448 -6.2531 1.4323 14 6 -0.7798 -6.5041 2.5314 15 6 -1.3614 -7.7511 2.6474 16 7 -1.1230 -8.6665 1.7194 17 6 -0.3366 -8.4008 0.6870 18 7 -0.1120 -9.3842 -0.2607 19 6 -0.4692 -8.9114 -1.6043 20 6 -0.0734 -9.9665 -2.6398 21 6 -0.8013 -11.2774 -2.3293 22 6 -0.4502 -11.7226 -0.9070 23 6 -0.8351 -10.6165 0.0781 24 7 0.2411 -7.2180 0.5396 25 6 -0.3395 -3.9374 1.2786 26 6 0.3762 -2.5850 1.2533 27 1 -0.4850 0.8401 0.0004 28 1 0.6212 -2.5572 -0.8883 29 1 2.8997 -3.5836 0.8671 30 1 2.8419 -3.6327 -0.9119 31 1 2.1802 -5.8160 0.0754 32 1 0.8306 -5.0710 -0.8140 33 1 -0.9577 -5.7405 3.2742 34 1 -2.0039 -7.9779 3.4854 35 1 -1.5442 -8.7384 -1.6546 36 1 0.0583 -7.9809 -1.8141 37 1 1.0035 -10.1299 -2.5995 38 1 -0.3529 -9.6220 -3.6354 39 1 -0.4893 -12.0440 -3.0385 40 1 -1.8777 -11.1249 -2.4079 41 1 0.6208 -11.9136 -0.8395 42 1 -0.9982 -12.6330 -0.6643 43 1 -0.5732 -10.9246 1.0904 44 1 -1.9084 -10.4356 0.0196 45 1 -0.9753 -4.0282 0.3979 46 1 -0.9521 -4.0075 2.1774 47 1 1.0017 -2.4876 2.1407 48 1 -0.3618 -1.7829 1.2378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546757301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:25 Heat of formation + Delta-G solvation = 47.309724 kcal Electronic energy + Delta-G solvation = -26937.950173 eV Core-core repulsion = 23413.093369 eV Total energy + Delta-G solvation = -3524.856803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.42095 -40.47108 -39.22729 -36.26781 -34.90027 -34.25742 -32.91451 -31.93861 -31.55224 -30.85087 -27.87967 -26.22009 -25.37772 -24.24125 -24.05002 -23.12508 -22.64185 -20.78702 -20.51345 -19.06815 -18.48191 -18.41161 -17.25019 -16.59237 -16.52429 -16.29499 -15.93187 -15.59259 -15.34677 -15.17428 -15.06271 -14.79353 -14.49603 -14.38389 -14.23990 -14.20347 -14.02089 -13.23504 -13.20071 -12.98575 -12.85854 -12.36554 -12.27111 -12.15284 -12.06662 -11.98522 -11.87375 -11.74917 -11.51551 -11.44785 -11.37988 -11.18967 -10.89058 -10.73487 -10.41593 -10.23919 -9.78588 -9.21888 -8.09587 -6.21893 0.00464 0.17780 1.40741 1.43536 1.54225 2.01680 2.43943 2.56533 2.76769 3.18252 3.25996 3.62439 3.81862 3.88360 3.90402 4.00355 4.11521 4.15212 4.21826 4.28046 4.30265 4.32984 4.42976 4.55570 4.58001 4.60350 4.61861 4.69337 4.78823 4.86240 4.90759 4.91921 4.98849 5.02362 5.09231 5.16494 5.18982 5.21290 5.28848 5.43504 5.47544 5.50429 5.64083 5.70042 5.86815 5.96482 6.10787 6.11897 6.32368 6.37888 6.87961 7.20418 7.46037 8.95711 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023410 B = 0.002903 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.796573 B = 9641.352353 C =10399.181769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.101 4.101 11 C 0.086 3.914 12 N -0.471 5.471 13 C 0.365 3.635 14 C -0.276 4.276 15 C 0.188 3.812 16 N -0.584 5.584 17 C 0.499 3.501 18 N -0.468 5.468 19 C 0.069 3.931 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.115 4.115 23 C 0.075 3.925 24 N -0.590 5.590 25 C 0.077 3.923 26 C -0.096 4.096 27 H 0.261 0.739 28 H -0.008 1.008 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.165 0.835 34 H 0.209 0.791 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.027 0.973 46 H 0.097 0.903 47 H 0.042 0.958 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 -21.915 0.825 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.139 4.139 11 C -0.041 4.041 12 N -0.187 5.187 13 C 0.124 3.876 14 C -0.302 4.302 15 C 0.024 3.976 16 N -0.307 5.307 17 C 0.141 3.859 18 N -0.188 5.188 19 C -0.057 4.057 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.052 4.052 24 N -0.316 5.316 25 C -0.048 4.048 26 C -0.134 4.134 27 H 0.070 0.930 28 H 0.010 0.990 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.182 0.818 34 H 0.226 0.774 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.115 0.885 47 H 0.060 0.940 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.420 -22.477 0.470 22.912 hybrid contribution -0.600 2.103 0.064 2.188 sum -5.020 -20.374 0.534 20.990 Atomic orbital electron populations 1.69986 1.07004 1.27093 1.51471 1.25690 0.95689 1.02179 0.94798 0.85593 0.79071 0.79937 0.77569 1.19408 1.20818 1.20492 1.21540 0.93009 0.91952 1.50361 0.93069 1.18685 0.93097 0.92486 0.93264 1.21630 0.98185 0.93244 1.00843 1.21832 0.95615 0.98359 0.88258 1.58914 1.21364 1.00544 1.37920 1.20340 0.87510 0.90130 0.89631 1.22460 1.04835 1.01927 1.01027 1.23453 0.92416 0.86737 0.94945 1.68436 1.19142 1.36844 1.06298 1.21087 0.86609 0.87204 0.91022 1.58459 1.55262 1.03237 1.01879 1.22162 0.98545 0.99603 0.85363 1.21634 1.01503 0.94493 0.97414 1.21624 1.00291 0.96938 0.96908 1.21682 1.02464 0.97120 0.94014 1.22057 0.95709 0.87007 1.00423 1.67887 1.29178 1.02815 1.31701 1.22295 0.91695 0.89717 1.01048 1.21503 0.99634 0.93638 0.98667 0.92969 0.98985 0.92652 0.92201 0.90452 0.94930 0.81788 0.77425 0.94489 0.91080 0.91123 0.89488 0.89596 0.91718 0.91375 0.88803 0.90218 0.93567 0.95459 0.88504 0.93957 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.69 11.37 21.45 0.24 -51.45 16 2 C 0.02 0.82 5.31 84.66 0.45 1.27 16 3 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.53 -29.05 8.56 25.60 0.22 -28.84 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.04 2.15 2.16 -11.46 -0.02 2.13 16 10 C -0.10 -4.31 5.32 30.65 0.16 -4.14 16 11 C 0.09 3.31 4.67 86.33 0.40 3.71 16 12 N -0.47 -17.26 4.68 -701.46 -3.28 -20.54 16 13 C 0.37 12.25 6.40 133.21 0.85 13.10 16 14 C -0.28 -7.31 9.27 22.58 0.21 -7.10 16 15 C 0.19 4.28 11.28 84.55 0.95 5.23 16 16 N -0.58 -15.92 8.67 -198.28 -1.72 -17.64 16 17 C 0.50 15.29 7.17 261.52 1.88 17.16 16 18 N -0.47 -12.30 4.72 -709.00 -3.34 -15.64 16 19 C 0.07 1.65 5.33 86.33 0.46 2.11 16 20 C -0.11 -1.91 6.09 30.65 0.19 -1.73 16 21 C -0.12 -1.59 6.00 30.67 0.18 -1.41 16 22 C -0.12 -1.66 6.09 30.65 0.19 -1.48 16 23 C 0.07 1.53 4.63 86.33 0.40 1.93 16 24 N -0.59 -20.29 8.06 -195.56 -1.58 -21.86 16 25 C 0.08 2.91 5.25 86.32 0.45 3.37 16 26 C -0.10 -4.41 5.12 30.65 0.16 -4.25 16 27 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 2.90 7.72 -2.39 -0.02 2.88 16 32 H 0.03 1.31 8.12 -2.38 -0.02 1.29 16 33 H 0.16 3.64 7.23 -2.91 -0.02 3.62 16 34 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 2.01 7.55 -2.39 -0.02 1.99 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 1.74 7.68 -2.39 -0.02 1.72 16 44 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 3.07 6.75 -2.39 -0.02 3.06 16 47 H 0.04 1.95 8.14 -2.39 -0.02 1.94 16 48 H 0.08 3.87 6.17 -2.39 -0.01 3.85 16 Total: -1.00 -63.63 368.15 0.41 -63.22 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.93 Total: 17.54 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 7.13 Total: 1.08 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -9.67 Total: -127.13 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -63.63 0.41 -63.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546757301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.530 kcal (2) G-P(sol) polarization free energy of solvation -63.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds