Wall clock time and date at job start Tue Mar 31 2020 11:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99872 * 2 1 4 4 C 1.50698 * 119.99685 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47148 * 95.28660 * 4 2 1 6 6 C 1.36740 * 127.14313 * 95.23369 * 5 4 2 7 7 C 1.50697 * 126.33963 * 359.96181 * 6 5 4 8 8 C 1.53006 * 117.49781 * 188.74955 * 7 6 5 9 9 C 1.53004 * 117.49957 * 120.09366 * 7 6 5 10 10 N 1.30294 * 107.30887 * 179.83663 * 6 5 4 11 11 N 1.28529 * 110.05275 * 0.43548 * 10 6 5 12 12 C 1.31216 * 109.86154 * 359.72279 * 11 10 6 13 13 N 1.38574 * 126.47669 * 180.02562 * 12 11 10 14 14 C 1.46849 * 111.00089 * 106.96755 * 13 12 11 15 15 C 1.53038 * 109.52359 * 174.16042 * 14 13 12 16 16 C 1.53117 * 109.27597 * 59.18539 * 15 14 13 17 17 C 1.50693 * 109.52463 * 182.43733 * 16 15 14 18 18 H 1.08001 * 120.00505 * 119.67995 * 17 16 15 19 19 C 1.37887 * 119.99935 * 299.68424 * 17 16 15 20 20 N 1.31511 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46956 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46999 * 119.99890 * 21 19 17 24 24 H 1.48501 * 109.46823 * 239.99819 * 21 19 17 25 25 C 1.53114 * 109.16174 * 302.34105 * 16 15 14 26 26 C 1.46850 * 110.99984 * 342.76009 * 13 12 11 27 27 H 1.08002 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00033 * 179.72324 * 1 2 3 29 29 H 1.09000 * 109.46921 * 85.21609 * 3 2 1 30 30 H 1.08997 * 109.46703 * 205.21309 * 3 2 1 31 31 H 1.09003 * 109.47214 * 325.21518 * 3 2 1 32 32 H 1.09000 * 109.46853 * 215.27818 * 4 2 1 33 33 H 1.08999 * 109.47771 * 335.28300 * 4 2 1 34 34 H 1.09000 * 115.55714 * 334.41588 * 7 6 5 35 35 H 1.09008 * 117.49771 * 359.97438 * 8 7 6 36 36 H 1.09003 * 117.50275 * 145.01991 * 8 7 6 37 37 H 1.08997 * 117.49576 * 214.97774 * 9 7 6 38 38 H 1.09001 * 117.49509 * 359.97221 * 9 7 6 39 39 H 1.08996 * 109.46485 * 294.18293 * 14 13 12 40 40 H 1.09005 * 109.45693 * 54.14913 * 14 13 12 41 41 H 1.08997 * 109.50771 * 299.24102 * 15 14 13 42 42 H 1.09005 * 109.49977 * 179.11996 * 15 14 13 43 43 H 1.09008 * 109.52706 * 62.24894 * 16 15 14 44 44 H 0.96995 * 119.99644 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.50543 * 297.71838 * 25 16 15 46 46 H 1.08999 * 109.50872 * 177.59429 * 25 16 15 47 47 H 1.08997 * 109.46539 * 305.85690 * 26 13 12 48 48 H 1.09004 * 109.45797 * 65.82459 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 7 2.4178 -1.6638 -1.3761 6 6 3.5978 -1.4084 -2.0180 7 6 4.7932 -0.6962 -1.4395 8 6 5.9326 -0.3372 -2.3955 9 6 6.1135 -1.4670 -1.3786 10 7 3.4980 -1.8971 -3.2217 11 7 2.3407 -2.4318 -3.3857 12 6 1.6365 -2.3171 -2.2844 13 7 0.3439 -2.7736 -2.0818 14 6 0.3336 -3.9547 -1.2092 15 6 -1.1121 -4.3423 -0.8903 16 6 -1.8546 -4.6424 -2.1954 17 6 -3.2947 -4.9666 -1.8924 18 1 -4.0843 -4.3575 -2.3071 19 6 -3.6045 -6.0410 -1.0855 20 7 -2.6431 -6.7830 -0.5808 21 14 -5.3897 -6.4425 -0.7094 22 1 -6.2720 -5.4625 -1.3925 23 1 -5.7016 -7.8114 -1.1930 24 1 -5.6144 -6.3723 0.7568 25 6 -1.7875 -3.4131 -3.1058 26 6 -0.3223 -3.0523 -3.3605 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0045 29 1 2.1709 1.6626 1.0241 30 1 3.0503 1.1548 -0.4378 31 1 1.5142 2.0418 -0.5863 32 1 2.9716 -1.2006 0.5930 33 1 1.4367 -2.0868 0.4287 34 1 4.5789 -0.0004 -0.6283 35 1 5.8177 -0.6166 -3.4429 36 1 6.4681 0.5945 -2.2131 37 1 6.7678 -1.2780 -0.5276 38 1 6.1173 -2.4893 -1.7567 39 1 0.8290 -4.7838 -1.7144 40 1 0.8611 -3.7265 -0.2830 41 1 -1.6041 -3.5188 -0.3728 42 1 -1.1197 -5.2283 -0.2554 43 1 -1.3864 -5.4911 -2.6941 44 1 -2.8611 -7.5390 -0.0136 45 1 -2.2901 -2.5749 -2.6232 46 1 -2.2776 -3.6351 -4.0538 47 1 -0.2711 -2.1688 -3.9968 48 1 0.1762 -3.8857 -3.8555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559000927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:40 Heat of formation + Delta-G solvation = 123.663640 kcal Electronic energy + Delta-G solvation = -27476.856235 eV Core-core repulsion = 23955.310386 eV Total energy + Delta-G solvation = -3521.545849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.80095 -38.46091 -37.25465 -36.82431 -34.07569 -33.30355 -31.48573 -30.09638 -28.91243 -27.69438 -26.96201 -25.69907 -24.09800 -22.71130 -22.51819 -22.18804 -20.86864 -20.12145 -18.85228 -18.62587 -17.19667 -16.57144 -16.19360 -16.00909 -15.57863 -14.80371 -14.61193 -14.56253 -14.45281 -14.04820 -13.51669 -13.37319 -12.90724 -12.67164 -12.64188 -12.43711 -12.16769 -11.97024 -11.73275 -11.61036 -11.50134 -11.33852 -11.17548 -11.04808 -10.93305 -10.77277 -10.54567 -10.33117 -10.31620 -10.14252 -9.95289 -9.63218 -9.30903 -9.16867 -9.02150 -8.80641 -8.37312 -7.87959 -6.03936 -4.09014 1.74391 1.96916 2.65421 2.99066 3.26895 3.35630 3.39483 3.71740 4.05981 4.24275 4.40688 4.41133 4.53474 4.61189 4.66895 4.81636 4.97171 5.20397 5.26678 5.29350 5.33250 5.38139 5.42412 5.49198 5.59899 5.72595 5.74229 5.80603 5.85948 5.95864 5.98052 6.00625 6.06061 6.15234 6.24095 6.30784 6.47048 6.54134 6.66539 6.73062 6.74860 6.91649 7.03588 7.29471 7.31483 7.62117 7.69589 7.93255 8.03183 8.39796 8.94845 9.01294 9.56059 11.02606 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.003438 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.965868 B = 8143.276101 C = 8661.995087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.171 4.171 3 C -0.114 4.114 4 C 0.149 3.851 5 N -0.468 5.468 6 C 0.194 3.806 7 C -0.082 4.082 8 C -0.149 4.149 9 C -0.161 4.161 10 N -0.285 5.285 11 N -0.328 5.328 12 C 0.376 3.624 13 N -0.452 5.452 14 C 0.061 3.939 15 C -0.102 4.102 16 C 0.046 3.954 17 C -0.509 4.509 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.107 4.107 26 C 0.078 3.922 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.100 0.900 43 H 0.025 0.975 44 H 0.259 0.741 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.973 14.210 4.099 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.172 4.172 3 C -0.171 4.171 4 C 0.027 3.973 5 N -0.162 5.162 6 C -0.073 4.073 7 C -0.102 4.102 8 C -0.187 4.187 9 C -0.199 4.199 10 N -0.125 5.125 11 N -0.173 5.173 12 C 0.020 3.980 13 N -0.177 5.177 14 C -0.065 4.065 15 C -0.140 4.140 16 C 0.028 3.972 17 C -0.547 4.547 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.145 4.145 26 C -0.049 4.049 27 H 0.119 0.881 28 H 0.132 0.868 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.050 14.005 3.034 20.068 hybrid contribution -1.063 -0.453 1.344 1.772 sum 12.987 13.552 4.378 19.274 Atomic orbital electron populations 1.24043 0.95095 1.03122 0.95068 1.21681 0.95731 0.94675 1.05135 1.20829 0.99987 0.94448 1.01839 1.20825 1.00906 0.96054 0.79522 1.46127 1.12949 1.44011 1.13121 1.23472 0.88295 1.04697 0.90884 1.20045 0.84869 1.02476 1.02851 1.23011 0.98608 0.99464 0.97643 1.23083 0.96833 0.98087 1.01935 1.73849 1.12403 1.12737 1.13475 1.74670 0.99371 1.22003 1.21238 1.22867 0.91150 0.97403 0.86611 1.58882 1.06430 1.34279 1.18126 1.22502 1.02084 0.87974 0.93939 1.21738 0.88971 1.01505 1.01814 1.18718 0.95811 0.91690 0.91026 1.21210 0.91830 1.12171 1.29495 0.92532 1.24971 0.97057 0.96056 0.95915 1.69862 1.31300 1.18109 1.33872 0.86569 0.85432 0.78227 0.77967 1.19787 1.21102 1.21109 1.21755 0.91733 1.00445 1.00568 1.22104 0.95845 1.00314 0.86640 0.88108 0.86797 0.91440 0.92190 0.91791 0.88681 0.87957 0.86170 0.87228 0.88049 0.88019 0.88191 0.94196 0.92719 0.93475 0.88193 0.95658 0.93074 0.92322 0.92176 0.91488 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 13.90 29.01 0.40 -1.18 16 2 C -0.17 -1.88 5.63 -101.07 -0.57 -2.45 16 3 C -0.11 -1.00 10.03 36.01 0.36 -0.64 16 4 C 0.15 1.73 6.13 -5.20 -0.03 1.70 16 5 N -0.47 -6.93 2.79 -115.37 -0.32 -7.25 16 6 C 0.19 2.84 7.59 -154.02 -1.17 1.67 16 7 C -0.08 -0.83 5.71 -91.77 -0.52 -1.35 16 8 C -0.15 -1.32 10.15 -26.69 -0.27 -1.59 16 9 C -0.16 -1.39 10.24 -26.69 -0.27 -1.67 16 10 N -0.29 -5.13 11.79 32.99 0.39 -4.74 16 11 N -0.33 -6.48 11.44 30.32 0.35 -6.13 16 12 C 0.38 6.74 6.90 -318.87 -2.20 4.54 16 13 N -0.45 -8.19 4.67 -174.54 -0.82 -9.01 16 14 C 0.06 1.15 5.33 -3.83 -0.02 1.13 16 15 C -0.10 -2.23 5.12 -26.65 -0.14 -2.37 16 16 C 0.05 1.09 2.16 -91.66 -0.20 0.89 16 17 C -0.51 -13.40 8.56 -34.44 -0.29 -13.69 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.31 -17.82 -0.09 1.53 16 20 N -0.89 -24.53 11.37 55.43 0.63 -23.90 16 21 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 C -0.11 -2.17 5.32 -26.65 -0.14 -2.32 16 26 C 0.08 1.47 4.87 -3.83 -0.02 1.45 16 27 H 0.10 1.03 8.05 -52.49 -0.42 0.61 16 28 H 0.11 1.54 7.99 -52.49 -0.42 1.12 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.51 6.24 -51.93 -0.32 0.18 16 31 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.09 0.85 7.67 -51.93 -0.40 0.46 16 33 H 0.10 1.24 6.01 -51.93 -0.31 0.93 16 34 H 0.12 0.96 6.25 -51.93 -0.32 0.64 16 35 H 0.11 1.16 7.92 -51.92 -0.41 0.75 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.92 6.14 -51.93 -0.32 0.60 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.10 2.46 6.18 -51.93 -0.32 2.14 16 43 H 0.03 0.67 8.14 -51.92 -0.42 0.24 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 48 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -29.82 381.96 -12.08 -41.90 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.86 Total: 2.01 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -5.18 Total: -14.35 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.23 Total: -51.03 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.82 -12.08 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559000927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.564 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds