Wall clock time and date at job start Tue Mar 31 2020 11:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99872 * 2 1 4 4 C 1.50698 * 119.99685 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47148 * 95.28660 * 4 2 1 6 6 C 1.36740 * 127.14313 * 95.23369 * 5 4 2 7 7 C 1.50697 * 126.33963 * 359.96181 * 6 5 4 8 8 C 1.53006 * 117.49781 * 188.74955 * 7 6 5 9 9 C 1.53004 * 117.49957 * 120.09366 * 7 6 5 10 10 N 1.30294 * 107.30887 * 179.83663 * 6 5 4 11 11 N 1.28529 * 110.05275 * 0.43548 * 10 6 5 12 12 C 1.31216 * 109.86154 * 359.72279 * 11 10 6 13 13 N 1.38574 * 126.47669 * 180.02562 * 12 11 10 14 14 C 1.46849 * 111.00089 * 106.96755 * 13 12 11 15 15 C 1.53038 * 109.52359 * 174.16042 * 14 13 12 16 16 C 1.53117 * 109.27597 * 59.18539 * 15 14 13 17 17 C 1.50693 * 109.52463 * 182.43733 * 16 15 14 18 18 H 1.08001 * 120.00505 * 119.67995 * 17 16 15 19 19 C 1.37887 * 119.99935 * 299.68424 * 17 16 15 20 20 N 1.31511 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46956 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46999 * 119.99890 * 21 19 17 24 24 H 1.48501 * 109.46823 * 239.99819 * 21 19 17 25 25 C 1.53114 * 109.16174 * 302.34105 * 16 15 14 26 26 C 1.46850 * 110.99984 * 342.76009 * 13 12 11 27 27 H 1.08002 * 120.00028 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00033 * 179.72324 * 1 2 3 29 29 H 1.09000 * 109.46921 * 85.21609 * 3 2 1 30 30 H 1.08997 * 109.46703 * 205.21309 * 3 2 1 31 31 H 1.09003 * 109.47214 * 325.21518 * 3 2 1 32 32 H 1.09000 * 109.46853 * 215.27818 * 4 2 1 33 33 H 1.08999 * 109.47771 * 335.28300 * 4 2 1 34 34 H 1.09000 * 115.55714 * 334.41588 * 7 6 5 35 35 H 1.09008 * 117.49771 * 359.97438 * 8 7 6 36 36 H 1.09003 * 117.50275 * 145.01991 * 8 7 6 37 37 H 1.08997 * 117.49576 * 214.97774 * 9 7 6 38 38 H 1.09001 * 117.49509 * 359.97221 * 9 7 6 39 39 H 1.08996 * 109.46485 * 294.18293 * 14 13 12 40 40 H 1.09005 * 109.45693 * 54.14913 * 14 13 12 41 41 H 1.08997 * 109.50771 * 299.24102 * 15 14 13 42 42 H 1.09005 * 109.49977 * 179.11996 * 15 14 13 43 43 H 1.09008 * 109.52706 * 62.24894 * 16 15 14 44 44 H 0.96995 * 119.99644 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.50543 * 297.71838 * 25 16 15 46 46 H 1.08999 * 109.50872 * 177.59429 * 25 16 15 47 47 H 1.08997 * 109.46539 * 305.85690 * 26 13 12 48 48 H 1.09004 * 109.45797 * 65.82459 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 7 2.4178 -1.6638 -1.3761 6 6 3.5978 -1.4084 -2.0180 7 6 4.7932 -0.6962 -1.4395 8 6 5.9326 -0.3372 -2.3955 9 6 6.1135 -1.4670 -1.3786 10 7 3.4980 -1.8971 -3.2217 11 7 2.3407 -2.4318 -3.3857 12 6 1.6365 -2.3171 -2.2844 13 7 0.3439 -2.7736 -2.0818 14 6 0.3336 -3.9547 -1.2092 15 6 -1.1121 -4.3423 -0.8903 16 6 -1.8546 -4.6424 -2.1954 17 6 -3.2947 -4.9666 -1.8924 18 1 -4.0843 -4.3575 -2.3071 19 6 -3.6045 -6.0410 -1.0855 20 7 -2.6431 -6.7830 -0.5808 21 14 -5.3897 -6.4425 -0.7094 22 1 -6.2720 -5.4625 -1.3925 23 1 -5.7016 -7.8114 -1.1930 24 1 -5.6144 -6.3723 0.7568 25 6 -1.7875 -3.4131 -3.1058 26 6 -0.3223 -3.0523 -3.3605 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0045 29 1 2.1709 1.6626 1.0241 30 1 3.0503 1.1548 -0.4378 31 1 1.5142 2.0418 -0.5863 32 1 2.9716 -1.2006 0.5930 33 1 1.4367 -2.0868 0.4287 34 1 4.5789 -0.0004 -0.6283 35 1 5.8177 -0.6166 -3.4429 36 1 6.4681 0.5945 -2.2131 37 1 6.7678 -1.2780 -0.5276 38 1 6.1173 -2.4893 -1.7567 39 1 0.8290 -4.7838 -1.7144 40 1 0.8611 -3.7265 -0.2830 41 1 -1.6041 -3.5188 -0.3728 42 1 -1.1197 -5.2283 -0.2554 43 1 -1.3864 -5.4911 -2.6941 44 1 -2.8611 -7.5390 -0.0136 45 1 -2.2901 -2.5749 -2.6232 46 1 -2.2776 -3.6351 -4.0538 47 1 -0.2711 -2.1688 -3.9968 48 1 0.1762 -3.8857 -3.8555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559000927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:39 Heat of formation + Delta-G solvation = 110.747922 kcal Electronic energy + Delta-G solvation = -27477.416303 eV Core-core repulsion = 23955.310386 eV Total energy + Delta-G solvation = -3522.105917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.06718 -40.02848 -38.10268 -37.76387 -35.85088 -34.42405 -33.31819 -31.75891 -30.30834 -28.54569 -27.98922 -27.45082 -25.18864 -24.34923 -23.79085 -23.24671 -22.20899 -21.31183 -20.33664 -19.75798 -18.51713 -18.24821 -17.48911 -17.26879 -16.71807 -16.45703 -15.87995 -15.51983 -15.46455 -15.35168 -14.93878 -14.67769 -14.45907 -14.17921 -14.07070 -13.49595 -13.29997 -13.15954 -12.92428 -12.85814 -12.76542 -12.61010 -12.40798 -12.34558 -12.29949 -12.17132 -12.03050 -11.94865 -11.69457 -11.48300 -11.34670 -11.10997 -10.90299 -10.74940 -10.43279 -10.39340 -10.15830 -9.30008 -8.08742 -6.21091 0.63530 0.86711 1.41333 1.44407 1.54917 1.57506 1.71481 2.44594 2.70740 2.94588 3.19299 3.29454 3.50838 3.68387 3.76035 3.84281 3.92962 4.03505 4.09741 4.13754 4.18032 4.31704 4.32547 4.48010 4.54780 4.60820 4.63536 4.69407 4.81701 4.83277 4.88424 4.91852 4.93989 4.95201 5.00538 5.08494 5.15631 5.21150 5.21895 5.31544 5.44960 5.55839 5.60168 5.66517 5.71459 5.82541 5.97583 6.10657 6.24472 6.37759 6.89259 7.47022 7.71220 8.96623 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.003438 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.965868 B = 8143.276101 C = 8661.995087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.166 4.166 3 C -0.112 4.112 4 C 0.140 3.860 5 N -0.462 5.462 6 C 0.213 3.787 7 C -0.097 4.097 8 C -0.144 4.144 9 C -0.149 4.149 10 N -0.325 5.325 11 N -0.362 5.362 12 C 0.357 3.643 13 N -0.443 5.443 14 C 0.076 3.924 15 C -0.087 4.087 16 C 0.043 3.957 17 C -0.527 4.527 18 H 0.054 0.946 19 C 0.015 3.985 20 N -0.917 5.917 21 Si 0.952 3.048 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.279 1.279 25 C -0.095 4.095 26 C 0.088 3.912 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.077 0.923 39 H 0.018 0.982 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.072 0.928 43 H -0.011 1.011 44 H 0.260 0.740 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.338 16.654 5.799 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C -0.168 4.168 4 C 0.020 3.980 5 N -0.155 5.155 6 C -0.055 4.055 7 C -0.117 4.117 8 C -0.182 4.182 9 C -0.187 4.187 10 N -0.163 5.163 11 N -0.207 5.207 12 C 0.000 4.000 13 N -0.167 5.167 14 C -0.051 4.051 15 C -0.126 4.126 16 C 0.025 3.975 17 C -0.565 4.565 18 H 0.072 0.928 19 C -0.184 4.184 20 N -0.557 5.557 21 Si 0.778 3.222 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.205 1.205 25 C -0.133 4.133 26 C -0.039 4.039 27 H 0.132 0.868 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.112 0.888 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.096 0.904 39 H 0.036 0.964 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.007 0.993 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 15.421 16.464 4.736 23.050 hybrid contribution -1.385 -1.206 0.807 2.006 sum 14.036 15.258 5.544 21.460 Atomic orbital electron populations 1.24032 0.95652 1.02720 0.96454 1.21865 0.95541 0.95398 1.03848 1.20861 0.99778 0.92834 1.03328 1.21153 1.02627 0.96188 0.78057 1.46317 1.12360 1.43084 1.13750 1.24385 0.88962 1.02246 0.89861 1.20431 0.83532 1.03474 1.04250 1.23092 0.97812 1.00983 0.96272 1.23153 0.95828 0.96887 1.02841 1.73788 1.12042 1.14786 1.15712 1.74559 1.00428 1.22984 1.22681 1.22750 0.91129 0.98668 0.87466 1.58820 1.07173 1.33420 1.17301 1.22242 0.99991 0.87881 0.94969 1.21434 0.90670 1.00231 1.00250 1.18677 0.94731 0.91851 0.92262 1.21526 0.92930 1.12460 1.29604 0.92758 1.25696 1.00837 0.96002 0.95831 1.69995 1.33041 1.18402 1.34256 0.85598 0.80898 0.77817 0.77881 1.19200 1.21093 1.20516 1.21584 0.92853 0.98890 0.99943 1.21916 0.94763 0.99966 0.87247 0.86815 0.89099 0.89179 0.91422 0.92032 0.85166 0.88830 0.82986 0.89657 0.84777 0.84610 0.90396 0.96353 0.90342 0.93391 0.90924 0.99289 0.93055 0.91874 0.91862 0.90573 0.95114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 13.90 67.78 0.94 -2.39 16 2 C -0.17 -3.23 5.63 -16.49 -0.09 -3.32 16 3 C -0.11 -1.53 10.03 71.24 0.71 -0.82 16 4 C 0.14 2.92 6.13 85.63 0.52 3.44 16 5 N -0.46 -13.04 2.79 -518.92 -1.45 -14.48 16 6 C 0.21 5.92 7.59 137.64 1.04 6.96 16 7 C -0.10 -1.62 5.71 -11.54 -0.07 -1.69 16 8 C -0.14 -2.10 10.15 30.62 0.31 -1.79 16 9 C -0.15 -2.08 10.24 30.62 0.31 -1.77 16 10 N -0.32 -11.67 11.79 -49.54 -0.58 -12.25 16 11 N -0.36 -14.56 11.44 -58.00 -0.66 -15.23 16 12 C 0.36 12.85 6.90 260.11 1.80 14.65 16 13 N -0.44 -16.30 4.67 -706.13 -3.30 -19.60 16 14 C 0.08 2.94 5.33 86.33 0.46 3.40 16 15 C -0.09 -3.96 5.12 30.65 0.16 -3.80 16 16 C 0.04 2.14 2.16 -11.46 -0.02 2.12 16 17 C -0.53 -28.40 8.56 25.60 0.22 -28.18 16 18 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 19 C 0.01 0.80 5.31 84.66 0.45 1.25 16 20 N -0.92 -51.74 11.37 21.45 0.24 -51.50 16 21 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 25 C -0.09 -3.95 5.32 30.65 0.16 -3.78 16 26 C 0.09 3.44 4.87 86.33 0.42 3.86 16 27 H 0.11 2.17 8.05 -2.91 -0.02 2.14 16 28 H 0.09 2.44 7.99 -2.91 -0.02 2.42 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.83 6.24 -2.39 -0.01 0.82 16 31 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.13 1.79 7.67 -2.39 -0.02 1.77 16 33 H 0.09 2.13 6.01 -2.39 -0.01 2.12 16 34 H 0.15 1.61 6.25 -2.39 -0.01 1.59 16 35 H 0.08 1.71 7.92 -2.38 -0.02 1.69 16 36 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 2.66 6.14 -2.38 -0.01 2.64 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 3.72 6.18 -2.38 -0.01 3.70 16 43 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 44 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 45 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 47 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 48 H 0.03 1.30 8.11 -2.39 -0.02 1.28 16 Total: -1.00 -67.53 381.96 4.54 -62.98 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.94 Total: 17.03 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 7.33 Total: -11.86 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -5.75 Total: -113.06 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -67.53 4.54 -62.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559000927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.731 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds