Wall clock time and date at job start Tue Mar 31 2020 10:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47315 * 239.99929 * 3 2 1 5 5 H 1.48501 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47148 * 119.99810 * 3 2 1 7 7 C 1.37877 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00291 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.52524 * 299.69172 * 9 7 2 11 11 C 1.53036 * 109.28023 * 182.43926 * 10 9 7 12 12 N 1.46843 * 109.52510 * 59.17495 * 11 10 9 13 13 C 1.38575 * 111.00276 * 174.16245 * 12 11 10 14 14 N 1.31216 * 126.47006 * 87.52615 * 13 12 11 15 15 N 1.28535 * 109.85592 * 179.82172 * 14 13 12 16 16 C 1.30289 * 110.05377 * 0.45848 * 15 14 13 17 17 C 1.50708 * 126.34735 * 179.76067 * 16 15 14 18 18 C 1.53781 * 113.61298 * 37.45096 * 17 16 15 19 19 C 1.53773 * 87.08142 * 220.01807 * 18 17 16 20 20 C 1.53778 * 113.61319 * 299.95406 * 17 16 15 21 21 N 1.36452 * 126.47258 * 267.84225 * 13 12 11 22 22 C 1.46500 * 127.13719 * 359.97438 * 21 13 12 23 23 C 1.53005 * 117.49745 * 313.51762 * 22 21 13 24 24 C 1.53003 * 60.00033 * 252.51400 * 23 22 21 25 25 C 1.46846 * 111.19913 * 298.26035 * 12 11 10 26 26 C 1.53042 * 109.52423 * 61.73933 * 25 12 11 27 27 H 0.97002 * 120.00227 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.57192 * 59.84320 * 9 7 2 29 29 H 1.09001 * 109.49839 * 302.37648 * 10 9 7 30 30 H 1.09002 * 109.50324 * 62.49167 * 10 9 7 31 31 H 1.09006 * 109.46090 * 299.16127 * 11 10 9 32 32 H 1.09004 * 109.46486 * 179.19375 * 11 10 9 33 33 H 1.08998 * 112.84901 * 168.75643 * 17 16 15 34 34 H 1.09003 * 113.61221 * 334.57076 * 18 17 16 35 35 H 1.09000 * 113.61120 * 105.46769 * 18 17 16 36 36 H 1.09001 * 113.61559 * 270.88680 * 19 18 17 37 37 H 1.09005 * 113.61582 * 139.98190 * 19 18 17 38 38 H 1.09000 * 113.61394 * 254.53117 * 20 17 16 39 39 H 1.09000 * 113.61632 * 25.43359 * 20 17 16 40 40 H 1.08995 * 115.55256 * 99.23144 * 22 21 13 41 41 H 1.08999 * 117.50089 * 0.02562 * 23 22 21 42 42 H 1.08998 * 117.49722 * 145.01912 * 23 22 21 43 43 H 1.09005 * 117.49342 * 252.51055 * 24 23 22 44 44 H 1.08994 * 117.49777 * 107.49785 * 24 23 22 45 45 H 1.08999 * 109.46438 * 301.72655 * 25 12 11 46 46 H 1.09001 * 109.46393 * 181.75336 * 25 12 11 47 47 H 1.08999 * 109.50535 * 180.88155 * 26 25 12 48 48 H 1.09003 * 109.50251 * 60.76239 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 0.3766 -2.5852 1.2535 11 6 -0.3390 -3.9377 1.2786 12 7 0.6547 -5.0189 1.2778 13 6 0.0452 -6.2538 1.4317 14 7 -0.4314 -7.0132 0.4737 15 7 -0.9233 -8.0901 0.9741 16 6 -0.7994 -8.0773 2.2710 17 6 -1.2557 -9.1534 3.2225 18 6 -1.0607 -10.5789 2.6796 19 6 -2.4268 -10.9172 3.2992 20 6 -2.7685 -9.4236 3.1671 21 7 -0.1780 -6.9071 2.6087 22 6 0.1753 -6.4498 3.9549 23 6 1.5837 -5.8896 4.1637 24 6 1.2157 -7.2637 4.7271 25 6 1.4752 -4.9851 0.0604 26 6 2.2450 -3.6638 -0.0011 27 1 -0.4850 0.8400 0.0004 28 1 0.6214 -2.5572 -0.8883 29 1 1.0023 -2.4881 2.1407 30 1 -0.3614 -1.7832 1.2383 31 1 -0.9751 -4.0285 0.3980 32 1 -0.9514 -4.0080 2.1776 33 1 -0.8737 -9.0138 4.2338 34 1 -1.0493 -10.6337 1.5910 35 1 -0.2285 -11.1114 3.1399 36 1 -2.3648 -11.2613 4.3316 37 1 -3.0425 -11.5630 2.6729 38 1 -3.3150 -9.0235 4.0211 39 1 -3.2240 -9.1627 2.2119 40 1 -0.6359 -5.9987 4.5263 41 1 2.2472 -5.8608 3.2994 42 1 1.6992 -5.0695 4.8724 43 1 1.0892 -7.3476 5.8065 44 1 1.6373 -8.1393 4.2335 45 1 0.8307 -5.0709 -0.8145 46 1 2.1805 -5.8160 0.0746 47 1 2.8418 -3.6324 -0.9126 48 1 2.9001 -3.5836 0.8664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563298605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:09 Heat of formation + Delta-G solvation = 127.996353 kcal Electronic energy + Delta-G solvation = -27345.279764 eV Core-core repulsion = 23823.921796 eV Total energy + Delta-G solvation = -3521.357968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.83357 -38.88766 -38.13851 -37.61806 -34.03913 -32.62886 -31.53151 -30.02817 -29.36181 -26.22148 -25.83284 -25.42242 -23.73363 -23.01945 -22.35398 -22.13104 -21.04653 -20.22139 -19.35623 -18.49804 -17.56603 -16.51906 -16.34522 -16.01486 -15.68505 -15.20772 -14.91390 -14.54805 -14.05733 -13.72164 -13.42560 -13.00452 -12.76231 -12.65361 -12.60607 -12.45724 -12.32996 -11.78413 -11.59108 -11.47619 -11.31034 -11.26794 -11.03330 -10.90436 -10.83195 -10.70641 -10.69533 -10.58931 -10.29119 -10.21306 -10.10306 -9.87926 -9.57916 -9.10456 -8.88231 -8.79139 -8.33465 -8.05707 -6.00457 -4.05970 1.88091 2.32508 3.01186 3.31047 3.32120 3.36072 3.38545 4.01240 4.18068 4.36449 4.42756 4.43963 4.46523 4.49482 4.66804 4.71572 4.83394 5.19058 5.29089 5.29666 5.33811 5.44913 5.50962 5.59012 5.61744 5.69066 5.73069 5.75156 5.77272 5.81636 5.94209 6.00738 6.01865 6.13137 6.14890 6.23015 6.30823 6.40394 6.54819 6.75365 6.79170 6.94525 7.06851 7.34910 7.37690 7.67321 7.73854 7.97859 8.07529 8.42962 8.97073 8.97788 9.58714 11.05944 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.003104 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.419795 B = 9017.225247 C = 9309.143296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.101 4.101 11 C 0.069 3.931 12 N -0.458 5.458 13 C 0.369 3.631 14 N -0.322 5.322 15 N -0.287 5.287 16 C 0.181 3.819 17 C -0.026 4.026 18 C -0.122 4.122 19 C -0.140 4.140 20 C -0.124 4.124 21 N -0.447 5.447 22 C 0.054 3.946 23 C -0.141 4.141 24 C -0.177 4.177 25 C 0.075 3.925 26 C -0.106 4.106 27 H 0.260 0.740 28 H 0.025 0.975 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 -18.049 12.194 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.139 4.139 11 C -0.057 4.057 12 N -0.184 5.184 13 C 0.013 3.987 14 N -0.165 5.165 15 N -0.126 5.126 16 C -0.086 4.086 17 C -0.047 4.047 18 C -0.160 4.160 19 C -0.178 4.178 20 C -0.163 4.163 21 N -0.140 5.140 22 C -0.050 4.050 23 C -0.179 4.179 24 C -0.214 4.214 25 C -0.052 4.052 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.117 0.883 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.117 -18.264 11.179 21.518 hybrid contribution 0.294 1.435 0.728 1.636 sum -1.823 -16.829 11.907 20.696 Atomic orbital electron populations 1.69852 1.05872 1.26529 1.50837 1.24967 0.94834 0.99027 0.95136 0.86686 0.79610 0.83269 0.78578 1.20323 1.21386 1.20347 1.21131 0.92858 0.90492 1.50410 0.92691 1.18701 0.92689 0.91787 0.93970 1.21720 1.00394 0.92037 0.99791 1.22401 0.92289 0.91453 0.99583 1.58934 1.22023 0.96735 1.40696 1.22812 0.98645 0.95124 0.82129 1.74705 1.15240 1.01618 1.24957 1.73882 1.18627 1.15472 1.04650 1.24507 1.01199 0.88670 0.94183 1.20990 0.97499 0.90305 0.95883 1.22941 0.97548 0.93269 1.02255 1.22798 0.97358 0.96465 1.01154 1.22965 0.94000 0.96249 1.03084 1.45721 1.45583 1.15887 1.06764 1.21820 0.95015 1.05916 0.82264 1.23262 0.94772 0.96246 1.03570 1.23409 1.01247 0.96585 1.00195 1.22137 0.95133 0.99575 0.88348 1.21735 0.98698 0.93113 1.00808 0.92963 0.95676 0.93537 0.88321 0.94284 0.92832 0.87723 0.88558 0.91259 0.90077 0.90855 0.91202 0.89115 0.85061 0.86922 0.86927 0.87160 0.88254 0.93341 0.92204 0.92313 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 11.37 55.43 0.63 -24.29 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.61 8.56 -34.44 -0.29 -13.90 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.14 2.16 -91.65 -0.20 0.94 16 10 C -0.10 -2.28 5.12 -26.65 -0.14 -2.42 16 11 C 0.07 1.37 5.40 -3.84 -0.02 1.35 16 12 N -0.46 -8.41 4.14 -174.55 -0.72 -9.13 16 13 C 0.37 6.65 6.54 -318.89 -2.08 4.57 16 14 N -0.32 -6.37 11.70 30.31 0.35 -6.02 16 15 N -0.29 -5.12 11.79 32.99 0.39 -4.73 16 16 C 0.18 2.64 7.12 -154.02 -1.10 1.54 16 17 C -0.03 -0.26 4.09 -90.96 -0.37 -0.63 16 18 C -0.12 -1.10 7.62 -25.92 -0.20 -1.30 16 19 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 20 C -0.12 -1.13 7.63 -25.92 -0.20 -1.33 16 21 N -0.45 -6.63 3.10 -107.01 -0.33 -6.96 16 22 C 0.05 0.62 6.22 -67.93 -0.42 0.19 16 23 C -0.14 -1.52 9.89 -26.73 -0.26 -1.78 16 24 C -0.18 -1.50 9.92 -26.73 -0.27 -1.76 16 25 C 0.07 1.42 5.10 -3.83 -0.02 1.40 16 26 C -0.11 -2.15 5.32 -26.65 -0.14 -2.30 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.10 2.50 6.17 -51.93 -0.32 2.18 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 1.00 8.10 -51.93 -0.42 0.57 16 33 H 0.10 0.87 7.31 -51.93 -0.38 0.49 16 34 H 0.10 1.05 7.78 -51.93 -0.40 0.65 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.11 1.48 7.98 -51.93 -0.41 1.07 16 42 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.98 8.06 -51.93 -0.42 0.57 16 46 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -30.04 380.52 -13.22 -43.25 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.24 Total: 1.35 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -6.02 Total: -15.11 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.32 Total: -51.12 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.04 -13.22 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563298605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.250 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds