Wall clock time and date at job start Tue Mar 31 2020 10:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47315 * 239.99929 * 3 2 1 5 5 H 1.48501 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47148 * 119.99810 * 3 2 1 7 7 C 1.37877 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00291 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.52524 * 299.69172 * 9 7 2 11 11 C 1.53036 * 109.28023 * 182.43926 * 10 9 7 12 12 N 1.46843 * 109.52510 * 59.17495 * 11 10 9 13 13 C 1.38575 * 111.00276 * 174.16245 * 12 11 10 14 14 N 1.31216 * 126.47006 * 87.52615 * 13 12 11 15 15 N 1.28535 * 109.85592 * 179.82172 * 14 13 12 16 16 C 1.30289 * 110.05377 * 0.45848 * 15 14 13 17 17 C 1.50708 * 126.34735 * 179.76067 * 16 15 14 18 18 C 1.53781 * 113.61298 * 37.45096 * 17 16 15 19 19 C 1.53773 * 87.08142 * 220.01807 * 18 17 16 20 20 C 1.53778 * 113.61319 * 299.95406 * 17 16 15 21 21 N 1.36452 * 126.47258 * 267.84225 * 13 12 11 22 22 C 1.46500 * 127.13719 * 359.97438 * 21 13 12 23 23 C 1.53005 * 117.49745 * 313.51762 * 22 21 13 24 24 C 1.53003 * 60.00033 * 252.51400 * 23 22 21 25 25 C 1.46846 * 111.19913 * 298.26035 * 12 11 10 26 26 C 1.53042 * 109.52423 * 61.73933 * 25 12 11 27 27 H 0.97002 * 120.00227 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.57192 * 59.84320 * 9 7 2 29 29 H 1.09001 * 109.49839 * 302.37648 * 10 9 7 30 30 H 1.09002 * 109.50324 * 62.49167 * 10 9 7 31 31 H 1.09006 * 109.46090 * 299.16127 * 11 10 9 32 32 H 1.09004 * 109.46486 * 179.19375 * 11 10 9 33 33 H 1.08998 * 112.84901 * 168.75643 * 17 16 15 34 34 H 1.09003 * 113.61221 * 334.57076 * 18 17 16 35 35 H 1.09000 * 113.61120 * 105.46769 * 18 17 16 36 36 H 1.09001 * 113.61559 * 270.88680 * 19 18 17 37 37 H 1.09005 * 113.61582 * 139.98190 * 19 18 17 38 38 H 1.09000 * 113.61394 * 254.53117 * 20 17 16 39 39 H 1.09000 * 113.61632 * 25.43359 * 20 17 16 40 40 H 1.08995 * 115.55256 * 99.23144 * 22 21 13 41 41 H 1.08999 * 117.50089 * 0.02562 * 23 22 21 42 42 H 1.08998 * 117.49722 * 145.01912 * 23 22 21 43 43 H 1.09005 * 117.49342 * 252.51055 * 24 23 22 44 44 H 1.08994 * 117.49777 * 107.49785 * 24 23 22 45 45 H 1.08999 * 109.46438 * 301.72655 * 25 12 11 46 46 H 1.09001 * 109.46393 * 181.75336 * 25 12 11 47 47 H 1.08999 * 109.50535 * 180.88155 * 26 25 12 48 48 H 1.09003 * 109.50251 * 60.76239 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 0.3766 -2.5852 1.2535 11 6 -0.3390 -3.9377 1.2786 12 7 0.6547 -5.0189 1.2778 13 6 0.0452 -6.2538 1.4317 14 7 -0.4314 -7.0132 0.4737 15 7 -0.9233 -8.0901 0.9741 16 6 -0.7994 -8.0773 2.2710 17 6 -1.2557 -9.1534 3.2225 18 6 -1.0607 -10.5789 2.6796 19 6 -2.4268 -10.9172 3.2992 20 6 -2.7685 -9.4236 3.1671 21 7 -0.1780 -6.9071 2.6087 22 6 0.1753 -6.4498 3.9549 23 6 1.5837 -5.8896 4.1637 24 6 1.2157 -7.2637 4.7271 25 6 1.4752 -4.9851 0.0604 26 6 2.2450 -3.6638 -0.0011 27 1 -0.4850 0.8400 0.0004 28 1 0.6214 -2.5572 -0.8883 29 1 1.0023 -2.4881 2.1407 30 1 -0.3614 -1.7832 1.2383 31 1 -0.9751 -4.0285 0.3980 32 1 -0.9514 -4.0080 2.1776 33 1 -0.8737 -9.0138 4.2338 34 1 -1.0493 -10.6337 1.5910 35 1 -0.2285 -11.1114 3.1399 36 1 -2.3648 -11.2613 4.3316 37 1 -3.0425 -11.5630 2.6729 38 1 -3.3150 -9.0235 4.0211 39 1 -3.2240 -9.1627 2.2119 40 1 -0.6359 -5.9987 4.5263 41 1 2.2472 -5.8608 3.2994 42 1 1.6992 -5.0695 4.8724 43 1 1.0892 -7.3476 5.8065 44 1 1.6373 -8.1393 4.2335 45 1 0.8307 -5.0709 -0.8145 46 1 2.1805 -5.8160 0.0746 47 1 2.8418 -3.6324 -0.9126 48 1 2.9001 -3.5836 0.8664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563298605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:09 Heat of formation + Delta-G solvation = 114.914388 kcal Electronic energy + Delta-G solvation = -27345.847041 eV Core-core repulsion = 23823.921796 eV Total energy + Delta-G solvation = -3521.925245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.08782 -40.07894 -39.33711 -38.50776 -35.86553 -33.81120 -33.33328 -31.72570 -30.72688 -27.82456 -26.69227 -26.51916 -24.93152 -24.25748 -23.84837 -23.47205 -22.14249 -21.40855 -20.56264 -19.92087 -18.67312 -18.38113 -17.61510 -17.24552 -16.69388 -16.52104 -16.02712 -15.93773 -15.49048 -15.21964 -14.73568 -14.44665 -14.32994 -14.18488 -13.70482 -13.41201 -13.28831 -13.23641 -12.99185 -12.76709 -12.62745 -12.50418 -12.44102 -12.25515 -12.15881 -12.10631 -11.99610 -11.75330 -11.50337 -11.40545 -11.37509 -11.19893 -10.96892 -10.88097 -10.75853 -10.40863 -10.27302 -9.53935 -8.07520 -6.20691 0.65258 1.17699 1.44222 1.44993 1.52520 1.70331 2.45106 2.51170 2.65769 3.20138 3.24203 3.59590 3.62383 3.73050 3.74562 3.84314 3.96502 3.98937 4.04112 4.08637 4.14595 4.34786 4.39139 4.47514 4.57127 4.62743 4.68218 4.74627 4.76767 4.86911 4.87484 4.89798 4.93425 4.95945 5.01428 5.05955 5.14459 5.15197 5.17446 5.21733 5.23696 5.46234 5.57016 5.60847 5.69489 5.72279 5.98317 6.11855 6.28997 6.38093 6.89900 7.47433 7.67560 8.97512 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.003104 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.419795 B = 9017.225247 C = 9309.143296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.044 3.956 10 C -0.086 4.086 11 C 0.084 3.916 12 N -0.444 5.444 13 C 0.349 3.651 14 N -0.359 5.359 15 N -0.324 5.324 16 C 0.201 3.799 17 C -0.029 4.029 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.127 4.127 21 N -0.441 5.441 22 C 0.028 3.972 23 C -0.154 4.154 24 C -0.139 4.139 25 C 0.084 3.916 26 C -0.093 4.093 27 H 0.260 0.740 28 H -0.014 1.014 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.014 0.986 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.148 0.852 44 H 0.096 0.904 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 -19.559 15.479 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.025 3.975 10 C -0.124 4.124 11 C -0.043 4.043 12 N -0.169 5.169 13 C -0.008 4.008 14 N -0.202 5.202 15 N -0.164 5.164 16 C -0.067 4.067 17 C -0.050 4.050 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.166 4.166 21 N -0.133 5.133 22 C -0.075 4.075 23 C -0.191 4.191 24 C -0.177 4.177 25 C -0.043 4.043 26 C -0.131 4.131 27 H 0.069 0.931 28 H 0.005 0.995 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.166 0.834 41 H 0.103 0.897 42 H 0.145 0.855 43 H 0.166 0.834 44 H 0.114 0.886 45 H 0.047 0.953 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.381 -19.793 14.480 24.563 hybrid contribution 0.036 1.831 -0.287 1.854 sum -1.345 -17.962 14.193 22.932 Atomic orbital electron populations 1.70003 1.07209 1.27176 1.51457 1.25730 0.95612 1.02334 0.94832 0.85684 0.78384 0.79167 0.78843 1.19950 1.21260 1.19343 1.21482 0.93125 0.91701 1.50385 0.92564 1.18662 0.93074 0.92728 0.92994 1.21419 0.99405 0.92653 0.98954 1.22108 0.92106 0.90882 0.99170 1.58868 1.21301 0.96823 1.39948 1.22686 0.99833 0.94905 0.83409 1.74589 1.16190 1.02686 1.26761 1.73814 1.20374 1.15436 1.06727 1.25430 0.98548 0.88841 0.93920 1.21439 0.98249 0.89114 0.96189 1.22922 0.99580 0.92786 1.00940 1.22782 0.95661 0.95044 1.02587 1.22948 0.93170 0.97989 1.02451 1.45931 1.44694 1.15389 1.07270 1.22303 0.96059 1.08223 0.80934 1.23255 0.93802 0.98694 1.03380 1.23528 0.97527 0.94843 1.01752 1.21977 0.95007 0.99199 0.88087 1.21563 0.97911 0.92272 1.01345 0.93073 0.99541 0.93339 0.91234 0.96780 0.91228 0.84725 0.91215 0.89369 0.87301 0.90622 0.89407 0.91834 0.83364 0.89681 0.85516 0.83398 0.88577 0.95344 0.90672 0.91882 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.78 11.37 21.45 0.24 -52.53 16 2 C 0.01 0.73 5.31 84.65 0.45 1.18 16 3 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.53 -28.70 8.56 25.60 0.22 -28.48 16 8 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.04 2.21 2.16 -11.46 -0.02 2.18 16 10 C -0.09 -4.01 5.12 30.65 0.16 -3.85 16 11 C 0.08 3.46 5.40 86.33 0.47 3.93 16 12 N -0.44 -16.61 4.14 -706.15 -2.92 -19.53 16 13 C 0.35 12.75 6.54 260.12 1.70 14.45 16 14 N -0.36 -14.70 11.70 -58.01 -0.68 -15.38 16 15 N -0.32 -11.83 11.79 -49.53 -0.58 -12.41 16 16 C 0.20 5.64 7.12 137.64 0.98 6.62 16 17 C -0.03 -0.51 4.09 -11.01 -0.05 -0.56 16 18 C -0.12 -1.95 7.62 31.12 0.24 -1.71 16 19 C -0.12 -1.41 8.08 31.12 0.25 -1.16 16 20 C -0.13 -2.03 7.63 31.12 0.24 -1.79 16 21 N -0.44 -12.62 3.10 -492.46 -1.52 -14.15 16 22 C 0.03 0.55 6.22 44.99 0.28 0.83 16 23 C -0.15 -2.96 9.89 30.60 0.30 -2.66 16 24 C -0.14 -1.79 9.92 30.60 0.30 -1.49 16 25 C 0.08 3.29 5.10 86.33 0.44 3.73 16 26 C -0.09 -3.87 5.32 30.65 0.16 -3.71 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 3.68 6.17 -2.39 -0.01 3.66 16 31 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 2.62 8.10 -2.39 -0.02 2.60 16 33 H 0.13 1.58 7.31 -2.39 -0.02 1.57 16 34 H 0.07 1.50 7.78 -2.39 -0.02 1.48 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.38 8.09 -2.39 -0.02 1.36 16 40 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.08 2.16 7.98 -2.39 -0.02 2.14 16 42 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.15 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 46 H 0.07 2.71 8.10 -2.39 -0.02 2.69 16 47 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -68.87 380.52 3.60 -65.26 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.93 Total: 16.07 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 6.12 Total: -12.48 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -5.47 Total: -114.00 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.87 3.60 -65.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563298605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.179 kcal (2) G-P(sol) polarization free energy of solvation -68.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds