Wall clock time and date at job start Tue Mar 31 2020 12:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46511 * 109.47216 * 2 1 4 4 C 1.46498 * 119.99675 * 269.99911 * 3 2 1 5 5 C 1.52993 * 109.47007 * 269.99630 * 4 3 2 6 6 C 1.39000 * 119.99855 * 89.99614 * 3 2 1 7 7 C 1.39137 * 119.70405 * 5.00560 * 6 3 2 8 8 C 1.38307 * 119.09401 * 180.02562 * 7 6 3 9 9 C 1.38885 * 118.50297 * 0.25392 * 8 7 6 10 10 C 1.50704 * 120.33200 * 179.72751 * 9 8 7 11 11 N 1.46898 * 109.47338 * 89.99549 * 10 9 8 12 12 C 1.46898 * 111.00075 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47449 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47319 * 54.99351 * 13 12 11 15 15 C 1.47204 * 109.46976 * 294.99787 * 13 12 11 16 16 N 9.18437 * 124.29684 * 73.79861 * 2 1 3 17 17 C 1.52996 * 109.47539 * 174.99859 * 13 12 11 18 18 C 1.50703 * 109.47348 * 184.99746 * 17 13 12 19 19 H 1.08004 * 119.99700 * 0.02562 * 18 17 13 20 20 C 1.37876 * 119.99876 * 180.02562 * 18 17 13 21 21 N 1.31508 * 120.00190 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46986 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47246 * 119.99929 * 22 20 18 25 25 H 1.48494 * 109.46967 * 240.00022 * 22 20 18 26 26 C 1.38024 * 119.32950 * 359.49415 * 9 8 7 27 27 N 1.31966 * 120.85821 * 0.51631 * 26 9 8 28 28 H 1.08997 * 109.46754 * 60.00314 * 1 2 3 29 29 H 1.08992 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47328 * 300.00010 * 1 2 3 31 31 H 1.08997 * 109.47328 * 239.99990 * 2 1 3 32 32 H 1.09001 * 109.47218 * 119.99819 * 2 1 3 33 33 H 1.08997 * 109.47387 * 29.99969 * 4 3 2 34 34 H 1.09002 * 109.46706 * 150.00062 * 4 3 2 35 35 H 1.08997 * 109.47324 * 300.00377 * 5 4 3 36 36 H 1.08998 * 109.47635 * 60.00241 * 5 4 3 37 37 H 1.09003 * 109.46997 * 180.02562 * 5 4 3 38 38 H 1.07998 * 120.45618 * 0.04006 * 7 6 3 39 39 H 1.08002 * 120.74429 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.46538 * 209.99775 * 10 9 8 41 41 H 1.09003 * 109.46916 * 329.99420 * 10 9 8 42 42 H 1.00904 * 110.99983 * 303.95516 * 11 10 9 43 43 H 1.08999 * 109.46853 * 300.00121 * 12 11 10 44 44 H 1.09004 * 109.47273 * 59.99905 * 12 11 10 45 45 H 1.09000 * 109.46950 * 305.00269 * 17 13 12 46 46 H 1.09002 * 109.46907 * 64.99922 * 17 13 12 47 47 H 0.97004 * 120.00343 * 180.02562 * 21 20 18 48 48 H 1.08003 * 119.56906 * 180.25248 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7103 6 6 2.2500 2.0366 1.2038 7 6 2.1167 1.3434 2.4028 8 6 2.3496 2.0079 3.5932 9 6 2.7042 3.3498 3.5448 10 6 2.9615 4.1154 4.8171 11 7 4.3824 4.0087 5.1741 12 6 4.6708 4.7441 6.4126 13 6 6.1569 4.6106 6.7509 14 1 6.7541 4.9399 5.9006 15 6 6.4669 3.2035 7.0524 16 7 6.7052 2.1170 7.2862 17 6 6.4826 5.4769 7.9691 18 6 7.9668 5.4422 8.2279 19 1 8.6132 4.8607 7.5872 20 6 8.4995 6.1528 9.2826 21 7 7.7123 6.8604 10.0630 22 14 10.3393 6.1104 9.6030 23 1 10.9983 5.2471 8.5902 24 1 10.8892 7.4869 9.5139 25 1 10.5930 5.5628 10.9598 26 6 2.8233 3.9739 2.3195 27 7 2.5950 3.3148 1.1992 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1411 -1.1384 35 1 4.3883 2.2155 -0.9507 36 1 3.8746 0.7622 -1.8406 37 1 3.8893 2.3456 -2.6541 38 1 1.8354 0.3007 2.4040 39 1 2.2534 1.4959 4.5393 40 1 2.7017 5.1636 4.6692 41 1 2.3528 3.7002 5.6204 42 1 4.6637 3.0429 5.2536 43 1 4.4228 5.7967 6.2761 44 1 4.0741 4.3328 7.2268 45 1 6.1708 6.5038 7.7785 46 1 5.9527 5.0922 8.8406 47 1 8.0871 7.3606 10.8049 48 1 3.1029 5.0162 2.2771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564845255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:37 Heat of formation + Delta-G solvation = 55.013095 kcal Electronic energy + Delta-G solvation = -25083.300153 eV Core-core repulsion = 21558.777393 eV Total energy + Delta-G solvation = -3524.522760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51876 -37.88474 -37.16027 -35.26280 -33.72220 -32.99242 -32.32617 -31.60140 -30.85897 -28.79895 -26.71489 -24.91819 -24.52424 -23.10823 -22.64645 -22.24745 -21.69264 -20.56112 -17.76228 -17.01741 -16.73838 -16.53318 -15.80862 -15.61185 -15.18391 -14.90467 -14.71404 -14.30049 -14.17720 -13.90401 -13.70096 -13.42164 -13.22343 -13.11624 -12.98805 -12.78826 -12.57356 -12.46102 -12.26704 -12.07972 -12.03379 -11.64063 -11.53158 -11.32802 -11.22451 -11.17910 -11.02653 -10.73229 -10.52960 -10.25706 -10.11045 -9.79460 -9.54340 -9.43349 -9.20253 -8.45334 -8.31557 -7.65943 -6.09010 -4.11856 1.22953 1.34784 2.66443 3.29144 3.37297 3.42221 3.57359 3.63084 3.78894 4.30380 4.39327 4.49862 4.57920 4.72175 4.76478 4.80012 4.84681 4.89193 4.98688 5.00245 5.10548 5.11256 5.18911 5.29121 5.30569 5.38554 5.41883 5.52457 5.55343 5.64262 5.72660 5.73817 5.77322 5.80851 5.96789 5.99541 6.16463 6.27260 6.37334 6.51576 6.55766 6.77957 7.10291 7.21748 7.43099 7.45804 7.54184 7.86457 8.07998 8.24100 8.41097 8.92999 9.53613 11.01883 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024137 B = 0.002055 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.769456 B =13619.092823 C =13808.784061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 N -0.611 5.611 4 C 0.125 3.875 5 C -0.167 4.167 6 C 0.401 3.599 7 C -0.241 4.241 8 C -0.028 4.028 9 C -0.191 4.191 10 C 0.110 3.890 11 N -0.688 5.688 12 C 0.067 3.933 13 C 0.007 3.993 14 H 0.111 0.889 15 C 0.242 3.758 16 N -0.478 5.478 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.284 1.284 26 C 0.170 3.830 27 N -0.542 5.542 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.338 0.662 43 H 0.093 0.907 44 H 0.035 0.965 45 H 0.040 0.960 46 H 0.024 0.976 47 H 0.262 0.738 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.167 -9.407 -21.743 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.003 4.003 3 N -0.325 5.325 4 C 0.002 3.998 5 C -0.226 4.226 6 C 0.168 3.832 7 C -0.266 4.266 8 C -0.055 4.055 9 C -0.196 4.196 10 C -0.019 4.019 11 N -0.319 5.319 12 C -0.063 4.063 13 C -0.015 4.015 14 H 0.129 0.871 15 C -0.075 4.075 16 N -0.155 5.155 17 C -0.007 4.007 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.210 1.210 26 C 0.012 3.988 27 N -0.258 5.258 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.155 0.845 43 H 0.111 0.889 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.042 0.958 47 H 0.071 0.929 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.569 -10.075 -22.612 29.788 hybrid contribution 0.571 -0.663 1.734 1.943 sum -15.998 -10.738 -20.878 28.410 Atomic orbital electron populations 1.22229 0.96197 1.02050 1.02592 1.21433 0.94035 0.81868 1.02936 1.46480 1.70362 1.12897 1.02772 1.21301 0.95793 0.98678 0.83991 1.22153 0.97602 1.01342 1.01454 1.18315 0.90599 0.88597 0.85726 1.21360 1.12142 1.01205 0.91861 1.21240 0.92944 0.93516 0.97789 1.20489 1.07354 0.95194 0.96589 1.20666 0.88958 0.99851 0.92467 1.60658 1.17416 1.18272 1.35522 1.22099 0.94909 0.99933 0.89369 1.19338 0.95186 0.83708 1.03297 0.87109 1.29367 0.91996 0.94642 0.91498 1.81053 1.09788 1.13902 1.10766 1.19171 0.97350 0.94316 0.89826 1.21191 0.92355 1.29487 1.13289 0.92455 1.24957 0.98055 0.95171 0.95867 1.69944 1.34880 1.30681 1.17528 0.86536 0.85501 0.77841 0.78213 1.19688 1.20815 1.21032 1.22315 0.91105 0.99277 0.86056 1.67199 1.19591 1.07281 1.31732 0.92444 0.91632 0.92292 0.90514 0.90477 0.91576 0.89531 0.92170 0.93132 0.91916 0.85395 0.85468 0.89832 0.94624 0.84451 0.88900 0.94705 0.94142 0.95757 0.92867 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.12 0.76 5.97 -4.04 -0.02 0.73 16 3 N -0.61 -5.41 2.59 -173.83 -0.45 -5.86 16 4 C 0.13 0.99 6.19 -4.05 -0.03 0.97 16 5 C -0.17 -1.30 10.24 37.15 0.38 -0.92 16 6 C 0.40 4.46 7.37 -155.02 -1.14 3.32 16 7 C -0.24 -2.48 9.27 -39.22 -0.36 -2.85 16 8 C -0.03 -0.30 9.85 -39.32 -0.39 -0.69 16 9 C -0.19 -2.13 5.41 -104.46 -0.57 -2.69 16 10 C 0.11 1.20 5.83 -4.98 -0.03 1.17 16 11 N -0.69 -9.06 6.49 -115.06 -0.75 -9.81 16 12 C 0.07 0.97 5.12 -3.83 -0.02 0.95 16 13 C 0.01 0.12 2.42 -93.41 -0.23 -0.10 16 14 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 15 C 0.24 4.91 12.98 -20.74 -0.27 4.64 16 16 N -0.48 -10.48 18.54 42.18 0.78 -9.70 16 17 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 18 C -0.53 -14.02 8.60 -34.44 -0.30 -14.32 16 19 H 0.06 1.53 7.59 -52.48 -0.40 1.14 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 22 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.17 1.96 10.85 -17.57 -0.19 1.77 16 27 N -0.54 -6.59 9.08 -12.44 -0.11 -6.71 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.08 0.47 5.98 -51.93 -0.31 0.16 16 33 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.09 0.80 7.30 -51.93 -0.38 0.42 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.13 1.07 6.03 -52.49 -0.32 0.75 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 41 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 42 H 0.34 4.78 7.80 -39.29 -0.31 4.47 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 402.06 15.07 6.06 6.06 Total: -1.00 -30.94 402.06 -9.77 -40.71 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.02 Total: 0.09 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.00 Total: -6.38 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.21 Total: -56.88 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.94 -9.77 -40.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564845255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.726 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds