Wall clock time and date at job start Tue Mar 31 2020 12:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46511 * 109.47216 * 2 1 4 4 C 1.46498 * 119.99675 * 269.99911 * 3 2 1 5 5 C 1.52993 * 109.47007 * 269.99630 * 4 3 2 6 6 C 1.39000 * 119.99855 * 89.99614 * 3 2 1 7 7 C 1.39137 * 119.70405 * 5.00560 * 6 3 2 8 8 C 1.38307 * 119.09401 * 180.02562 * 7 6 3 9 9 C 1.38885 * 118.50297 * 0.25392 * 8 7 6 10 10 C 1.50704 * 120.33200 * 179.72751 * 9 8 7 11 11 N 1.46898 * 109.47338 * 89.99549 * 10 9 8 12 12 C 1.46898 * 111.00075 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47449 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47319 * 54.99351 * 13 12 11 15 15 C 1.47204 * 109.46976 * 294.99787 * 13 12 11 16 16 N 9.18437 * 124.29684 * 73.79861 * 2 1 3 17 17 C 1.52996 * 109.47539 * 174.99859 * 13 12 11 18 18 C 1.50703 * 109.47348 * 184.99746 * 17 13 12 19 19 H 1.08004 * 119.99700 * 0.02562 * 18 17 13 20 20 C 1.37876 * 119.99876 * 180.02562 * 18 17 13 21 21 N 1.31508 * 120.00190 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46986 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47246 * 119.99929 * 22 20 18 25 25 H 1.48494 * 109.46967 * 240.00022 * 22 20 18 26 26 C 1.38024 * 119.32950 * 359.49415 * 9 8 7 27 27 N 1.31966 * 120.85821 * 0.51631 * 26 9 8 28 28 H 1.08997 * 109.46754 * 60.00314 * 1 2 3 29 29 H 1.08992 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47328 * 300.00010 * 1 2 3 31 31 H 1.08997 * 109.47328 * 239.99990 * 2 1 3 32 32 H 1.09001 * 109.47218 * 119.99819 * 2 1 3 33 33 H 1.08997 * 109.47387 * 29.99969 * 4 3 2 34 34 H 1.09002 * 109.46706 * 150.00062 * 4 3 2 35 35 H 1.08997 * 109.47324 * 300.00377 * 5 4 3 36 36 H 1.08998 * 109.47635 * 60.00241 * 5 4 3 37 37 H 1.09003 * 109.46997 * 180.02562 * 5 4 3 38 38 H 1.07998 * 120.45618 * 0.04006 * 7 6 3 39 39 H 1.08002 * 120.74429 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.46538 * 209.99775 * 10 9 8 41 41 H 1.09003 * 109.46916 * 329.99420 * 10 9 8 42 42 H 1.00904 * 110.99983 * 303.95516 * 11 10 9 43 43 H 1.08999 * 109.46853 * 300.00121 * 12 11 10 44 44 H 1.09004 * 109.47273 * 59.99905 * 12 11 10 45 45 H 1.09000 * 109.46950 * 305.00269 * 17 13 12 46 46 H 1.09002 * 109.46907 * 64.99922 * 17 13 12 47 47 H 0.97004 * 120.00343 * 180.02562 * 21 20 18 48 48 H 1.08003 * 119.56906 * 180.25248 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7103 6 6 2.2500 2.0366 1.2038 7 6 2.1167 1.3434 2.4028 8 6 2.3496 2.0079 3.5932 9 6 2.7042 3.3498 3.5448 10 6 2.9615 4.1154 4.8171 11 7 4.3824 4.0087 5.1741 12 6 4.6708 4.7441 6.4126 13 6 6.1569 4.6106 6.7509 14 1 6.7541 4.9399 5.9006 15 6 6.4669 3.2035 7.0524 16 7 6.7052 2.1170 7.2862 17 6 6.4826 5.4769 7.9691 18 6 7.9668 5.4422 8.2279 19 1 8.6132 4.8607 7.5872 20 6 8.4995 6.1528 9.2826 21 7 7.7123 6.8604 10.0630 22 14 10.3393 6.1104 9.6030 23 1 10.9983 5.2471 8.5902 24 1 10.8892 7.4869 9.5139 25 1 10.5930 5.5628 10.9598 26 6 2.8233 3.9739 2.3195 27 7 2.5950 3.3148 1.1992 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0956 3.1411 -1.1384 35 1 4.3883 2.2155 -0.9507 36 1 3.8746 0.7622 -1.8406 37 1 3.8893 2.3456 -2.6541 38 1 1.8354 0.3007 2.4040 39 1 2.2534 1.4959 4.5393 40 1 2.7017 5.1636 4.6692 41 1 2.3528 3.7002 5.6204 42 1 4.6637 3.0429 5.2536 43 1 4.4228 5.7967 6.2761 44 1 4.0741 4.3328 7.2268 45 1 6.1708 6.5038 7.7785 46 1 5.9527 5.0922 8.8406 47 1 8.0871 7.3606 10.8049 48 1 3.1029 5.0162 2.2771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564845255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:37 Heat of formation + Delta-G solvation = 38.589966 kcal Electronic energy + Delta-G solvation = -25084.012313 eV Core-core repulsion = 21558.777393 eV Total energy + Delta-G solvation = -3525.234920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29546 -38.97845 -38.19766 -36.54526 -35.46933 -33.98952 -33.45390 -32.45474 -31.90683 -29.67957 -28.19624 -26.03231 -25.21172 -24.14325 -23.61090 -23.52502 -22.94037 -21.28210 -18.58546 -18.41468 -18.23502 -17.73532 -16.91521 -16.64133 -16.28598 -15.92357 -15.72257 -15.43207 -14.99029 -14.81938 -14.72827 -14.49174 -14.35349 -14.22181 -13.98328 -13.83354 -13.78710 -13.60391 -13.31732 -13.21300 -13.05133 -12.88966 -12.65437 -12.57537 -12.50072 -12.35148 -12.20889 -11.95419 -11.87840 -11.83733 -11.40822 -11.16613 -10.80793 -10.59460 -10.54802 -10.25688 -9.34288 -8.39287 -8.18943 -6.26740 0.41715 0.53127 1.39035 1.42026 1.52457 1.94687 1.97109 2.03030 2.41787 2.93055 3.16141 3.27152 3.43973 3.64313 3.93058 4.01239 4.10805 4.16394 4.21185 4.26714 4.27596 4.35263 4.44843 4.50782 4.52322 4.56900 4.67360 4.70684 4.83510 4.85363 4.92806 4.97913 4.98793 5.03045 5.04315 5.08343 5.19149 5.29511 5.36595 5.47476 5.49365 5.64818 5.73979 5.80746 6.04579 6.14679 6.23091 6.35084 6.48004 6.76194 6.88499 7.28549 7.41615 8.91949 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024137 B = 0.002055 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.769456 B =13619.092823 C =13808.784061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.612 5.612 4 C 0.124 3.876 5 C -0.159 4.159 6 C 0.388 3.612 7 C -0.246 4.246 8 C -0.035 4.035 9 C -0.199 4.199 10 C 0.114 3.886 11 N -0.689 5.689 12 C 0.078 3.922 13 C 0.018 3.982 14 H 0.121 0.879 15 C 0.251 3.749 16 N -0.506 5.506 17 C 0.038 3.962 18 C -0.538 4.538 19 H 0.052 0.948 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.948 3.052 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.285 1.285 26 C 0.159 3.841 27 N -0.562 5.562 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.043 0.957 42 H 0.332 0.668 43 H 0.109 0.891 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.002 0.998 47 H 0.264 0.736 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.654 -10.123 -23.037 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.326 5.326 4 C 0.001 3.999 5 C -0.218 4.218 6 C 0.154 3.846 7 C -0.270 4.270 8 C -0.061 4.061 9 C -0.204 4.204 10 C -0.014 4.014 11 N -0.319 5.319 12 C -0.052 4.052 13 C -0.004 4.004 14 H 0.138 0.862 15 C -0.065 4.065 16 N -0.184 5.184 17 C -0.001 4.001 18 C -0.576 4.576 19 H 0.070 0.930 20 C -0.189 4.189 21 N -0.562 5.562 22 Si 0.774 3.226 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.211 1.211 26 C 0.002 3.998 27 N -0.280 5.280 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.149 0.851 43 H 0.128 0.872 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.073 0.927 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.068 -10.802 -23.932 31.317 hybrid contribution 0.688 -0.482 2.068 2.232 sum -16.380 -11.284 -21.864 29.558 Atomic orbital electron populations 1.22163 0.95543 1.02919 1.01732 1.21638 0.94493 0.80625 1.03912 1.46734 1.69769 1.13708 1.02340 1.21351 0.96368 0.97906 0.84240 1.22081 0.96822 1.01771 1.01115 1.18633 0.90516 0.88579 0.86896 1.21577 1.11856 1.02048 0.91547 1.21466 0.92652 0.93534 0.98495 1.20496 1.07983 0.95522 0.96412 1.20685 0.87490 1.00730 0.92540 1.60646 1.19161 1.17715 1.34413 1.21949 0.91902 1.01200 0.90116 1.19252 0.98134 0.81583 1.01393 0.86156 1.29737 0.91090 0.94920 0.90722 1.81051 1.10917 1.14918 1.11529 1.18994 0.95148 0.94981 0.90936 1.21590 0.94261 1.28785 1.12965 0.92955 1.25707 1.01946 0.95191 0.96009 1.70030 1.36477 1.31598 1.18133 0.85649 0.81007 0.78170 0.77769 1.19535 1.19784 1.21111 1.22533 0.91246 0.99842 0.86220 1.67215 1.20509 1.08068 1.32175 0.92549 0.89886 0.93843 0.88771 0.90258 0.89264 0.91216 0.94951 0.92389 0.90605 0.83684 0.84294 0.88595 0.93915 0.85127 0.87236 0.94645 0.94328 0.98008 0.92721 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 71.98 0.74 -0.80 16 2 C 0.12 1.24 5.97 86.38 0.52 1.75 16 3 N -0.61 -10.17 2.59 -703.89 -1.82 -12.00 16 4 C 0.12 1.83 6.19 86.38 0.53 2.37 16 5 C -0.16 -2.33 10.24 71.98 0.74 -1.59 16 6 C 0.39 8.42 7.37 133.07 0.98 9.40 16 7 C -0.25 -4.83 9.27 22.50 0.21 -4.63 16 8 C -0.04 -0.71 9.85 22.44 0.22 -0.49 16 9 C -0.20 -4.24 5.41 -19.76 -0.11 -4.35 16 10 C 0.11 2.31 5.83 85.56 0.50 2.81 16 11 N -0.69 -17.13 6.49 -517.95 -3.36 -20.49 16 12 C 0.08 2.15 5.12 86.30 0.44 2.59 16 13 C 0.02 0.65 2.42 -12.60 -0.03 0.62 16 14 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 15 C 0.25 10.08 12.98 89.44 1.16 11.24 16 16 N -0.51 -22.02 18.54 20.01 0.37 -21.65 16 17 C 0.04 1.75 4.42 29.85 0.13 1.89 16 18 C -0.54 -28.63 8.60 25.60 0.22 -28.41 16 19 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 20 C 0.01 0.57 5.46 84.66 0.46 1.03 16 21 N -0.92 -52.96 13.29 21.45 0.28 -52.68 16 22 Si 0.95 43.76 29.54 68.60 2.03 45.78 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 26 C 0.16 3.59 10.85 84.62 0.92 4.51 16 27 N -0.56 -13.64 9.08 -193.27 -1.75 -15.40 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.69 8.07 -2.39 -0.02 0.67 16 32 H 0.08 0.82 5.98 -2.39 -0.01 0.80 16 33 H 0.09 0.90 8.07 -2.39 -0.02 0.88 16 34 H 0.07 1.28 7.30 -2.39 -0.02 1.26 16 35 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.15 2.22 6.03 -2.91 -0.02 2.20 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.10 1.71 8.09 -2.39 -0.02 1.69 16 41 H 0.04 0.82 8.09 -2.39 -0.02 0.80 16 42 H 0.33 8.99 7.80 -89.69 -0.70 8.29 16 43 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 48 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -65.72 402.06 3.62 -62.10 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.24 Total: 16.38 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 7.63 Total: -2.06 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -6.28 Total: -122.20 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.72 3.62 -62.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564845255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.691 kcal (2) G-P(sol) polarization free energy of solvation -65.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds