Wall clock time and date at job start Tue Mar 31 2020 12:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46944 * 2 1 4 4 C 1.46492 * 120.00236 * 269.99656 * 3 2 1 5 5 C 1.53002 * 109.47097 * 270.00482 * 4 3 2 6 6 C 1.39013 * 119.99747 * 89.99640 * 3 2 1 7 7 C 1.39139 * 119.70747 * 5.00142 * 6 3 2 8 8 C 1.38294 * 119.09351 * 180.02562 * 7 6 3 9 9 C 1.38883 * 118.50672 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.33173 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.47086 * 90.00244 * 10 9 8 12 12 C 1.46904 * 110.99779 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46858 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47753 * 305.00128 * 13 12 11 15 15 C 1.47204 * 109.47042 * 64.99895 * 13 12 11 16 16 N 9.69140 * 128.77045 * 40.35138 * 2 1 3 17 17 C 1.52996 * 109.47153 * 184.99851 * 13 12 11 18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 C 1.38013 * 119.33320 * 0.27732 * 9 8 7 27 27 N 1.31974 * 120.85396 * 359.45159 * 26 9 8 28 28 H 1.08991 * 109.47592 * 300.00078 * 1 2 3 29 29 H 1.08999 * 109.46830 * 60.00383 * 1 2 3 30 30 H 1.09004 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47452 * 239.99386 * 2 1 3 32 32 H 1.09006 * 109.46548 * 119.99892 * 2 1 3 33 33 H 1.09001 * 109.46930 * 29.99561 * 4 3 2 34 34 H 1.09000 * 109.47578 * 149.99982 * 4 3 2 35 35 H 1.08993 * 109.47597 * 59.99579 * 5 4 3 36 36 H 1.09001 * 109.47132 * 180.02562 * 5 4 3 37 37 H 1.09011 * 109.46589 * 299.99463 * 5 4 3 38 38 H 1.08001 * 120.44700 * 0.02562 * 7 6 3 39 39 H 1.07997 * 120.74388 * 179.97438 * 8 7 6 40 40 H 1.09003 * 109.47324 * 330.00063 * 10 9 8 41 41 H 1.09004 * 109.47052 * 210.00222 * 10 9 8 42 42 H 1.00897 * 111.00127 * 56.04185 * 11 10 9 43 43 H 1.08997 * 109.46933 * 59.99775 * 12 11 10 44 44 H 1.08996 * 109.47325 * 299.99917 * 12 11 10 45 45 H 1.09004 * 109.47066 * 55.00326 * 17 13 12 46 46 H 1.08994 * 109.47405 * 295.00156 * 17 13 12 47 47 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 48 48 H 1.07996 * 119.57499 * 179.70640 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7075 1.8313 -1.7103 6 6 2.2499 2.0365 1.2039 7 6 2.1165 1.3434 2.4030 8 6 2.3494 2.0079 3.5933 9 6 2.7098 3.3483 3.5446 10 6 2.9738 4.1121 4.8166 11 7 4.3952 3.9990 5.1696 12 6 4.6904 4.7336 6.4071 13 6 6.1765 4.5922 6.7419 14 1 6.4392 3.5355 6.7906 15 6 6.9794 5.2497 5.6978 16 7 7.5988 5.7583 4.8923 17 6 6.4597 5.2509 8.0935 18 6 7.8953 5.0057 8.4808 19 1 8.5413 4.4373 7.8281 20 6 8.3859 5.5124 9.6657 21 7 9.6402 5.3030 10.0011 22 14 7.2688 6.4961 10.7944 23 1 6.6002 5.5785 11.7516 24 1 8.0759 7.4917 11.5446 25 1 6.2425 7.2001 9.9843 26 6 2.8186 3.9751 2.3198 27 7 2.5954 3.3146 1.1993 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 1.8932 -0.5139 0.8901 33 1 1.5818 1.6876 -2.0283 34 1 2.0955 3.1410 -1.1384 35 1 3.8745 0.7622 -1.8406 36 1 3.8894 2.3456 -2.6540 37 1 4.3883 2.2156 -0.9505 38 1 1.8350 0.3007 2.4041 39 1 2.2532 1.4960 4.5393 40 1 2.3656 3.6990 5.6214 41 1 2.7182 5.1615 4.6700 42 1 4.9821 4.3159 4.4126 43 1 4.0940 4.3252 7.2230 44 1 4.4468 5.7872 6.2711 45 1 5.8013 4.8247 8.8504 46 1 6.2816 6.3236 8.0193 47 1 9.9851 5.6591 10.8348 48 1 3.0939 5.0185 2.2777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564845257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:40 Heat of formation + Delta-G solvation = 59.540412 kcal Electronic energy + Delta-G solvation = -25133.962089 eV Core-core repulsion = 21609.635648 eV Total energy + Delta-G solvation = -3524.326441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55008 -37.94216 -37.23483 -35.30686 -33.75333 -33.01029 -32.34047 -31.66540 -31.01480 -28.91674 -27.07328 -25.02363 -24.52206 -23.11678 -22.72921 -22.23502 -21.39068 -20.60302 -17.77500 -17.08606 -16.89580 -16.78537 -15.95909 -15.59236 -15.14917 -14.95105 -14.76272 -14.47609 -14.13093 -13.91253 -13.77227 -13.38245 -13.26518 -13.14131 -12.99726 -12.80863 -12.71904 -12.42185 -12.32550 -12.17432 -12.09088 -11.97588 -11.62867 -11.39124 -11.36736 -11.22206 -11.14305 -10.82586 -10.41782 -10.19550 -9.90519 -9.81191 -9.74055 -9.44710 -9.31713 -8.61043 -8.40145 -7.68712 -6.09817 -4.10385 1.17627 1.35184 2.64501 3.26327 3.35118 3.35843 3.54404 3.58948 3.74861 4.27527 4.38811 4.40864 4.54866 4.69050 4.71011 4.75237 4.79673 4.86686 4.95834 5.03249 5.06918 5.09063 5.16926 5.24691 5.27382 5.35844 5.38245 5.45980 5.50765 5.57893 5.63305 5.70265 5.74631 5.76143 5.91642 5.98113 6.02162 6.18560 6.29836 6.37436 6.47894 6.75054 6.93680 7.01147 7.15083 7.19227 7.37406 7.64630 8.03498 8.35479 8.43636 8.93981 9.49911 11.03310 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.002130 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.912739 B =13143.121091 C =13599.471997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 N -0.611 5.611 4 C 0.125 3.875 5 C -0.167 4.167 6 C 0.401 3.599 7 C -0.242 4.242 8 C -0.011 4.011 9 C -0.192 4.192 10 C 0.110 3.890 11 N -0.687 5.687 12 C 0.064 3.936 13 C 0.017 3.983 14 H 0.116 0.884 15 C 0.238 3.762 16 N -0.468 5.468 17 C -0.004 4.004 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.878 3.122 23 H -0.274 1.274 24 H -0.288 1.288 25 H -0.264 1.264 26 C 0.153 3.847 27 N -0.541 5.541 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.340 0.660 43 H 0.092 0.908 44 H 0.036 0.964 45 H 0.035 0.965 46 H 0.023 0.977 47 H 0.264 0.736 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.661 -10.370 -18.965 31.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.003 4.003 3 N -0.325 5.325 4 C 0.002 3.998 5 C -0.226 4.226 6 C 0.167 3.833 7 C -0.266 4.266 8 C -0.037 4.037 9 C -0.197 4.197 10 C -0.019 4.019 11 N -0.319 5.319 12 C -0.066 4.066 13 C -0.005 4.005 14 H 0.134 0.866 15 C -0.079 4.079 16 N -0.145 5.145 17 C -0.043 4.043 18 C -0.565 4.565 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.705 3.295 23 H -0.200 1.200 24 H -0.214 1.214 25 H -0.189 1.189 26 C -0.005 4.005 27 N -0.258 5.258 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.158 0.842 43 H 0.110 0.890 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.074 0.926 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.614 -9.831 -20.687 31.492 hybrid contribution -0.591 0.781 1.509 1.799 sum -22.205 -9.050 -19.179 30.705 Atomic orbital electron populations 1.22231 0.96192 1.02072 1.02576 1.21437 0.94031 0.81805 1.02997 1.46484 1.70331 1.12932 1.02743 1.21300 0.95816 0.98629 0.84037 1.22156 0.97568 1.01396 1.01443 1.18327 0.90568 0.88531 0.85830 1.21422 1.12035 1.01274 0.91870 1.21205 0.91545 0.93105 0.97841 1.20461 1.07550 0.95770 0.95879 1.20663 0.90149 0.97141 0.93953 1.60627 1.04254 1.60422 1.06548 1.22121 0.95502 0.96211 0.92737 1.19064 0.89493 1.00894 0.91022 0.86626 1.29181 0.93211 0.92768 0.92776 1.81066 1.09570 1.10557 1.13272 1.19631 0.98790 0.96126 0.89769 1.21040 0.94110 1.35397 1.05998 0.90798 1.25007 0.94918 0.95601 0.97694 1.69908 1.14178 1.45625 1.23801 0.86807 0.81066 0.80479 0.81130 1.19989 1.21366 1.18891 1.22285 0.92626 0.99018 0.86567 1.67154 1.19636 1.07439 1.31526 0.92279 0.92488 0.91593 0.90507 0.90378 0.91538 0.89623 0.93051 0.91929 0.92221 0.85250 0.84819 0.90011 0.94466 0.84198 0.88994 0.94620 0.94683 0.95837 0.92581 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.12 0.73 5.97 -4.04 -0.02 0.70 16 3 N -0.61 -5.32 2.59 -173.84 -0.45 -5.77 16 4 C 0.13 0.99 6.19 -4.05 -0.03 0.97 16 5 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16 6 C 0.40 4.38 7.37 -155.01 -1.14 3.24 16 7 C -0.24 -2.37 9.27 -39.23 -0.36 -2.74 16 8 C -0.01 -0.11 9.85 -39.32 -0.39 -0.49 16 9 C -0.19 -2.05 5.41 -104.46 -0.57 -2.61 16 10 C 0.11 1.13 5.83 -4.97 -0.03 1.10 16 11 N -0.69 -8.63 6.49 -115.05 -0.75 -9.38 16 12 C 0.06 0.87 5.12 -3.82 -0.02 0.85 16 13 C 0.02 0.30 2.42 -93.41 -0.23 0.08 16 14 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 15 C 0.24 4.78 12.98 -20.75 -0.27 4.51 16 16 N -0.47 -10.31 18.54 42.17 0.78 -9.52 16 17 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 18 C -0.53 -14.24 9.15 -34.44 -0.32 -14.55 16 19 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 22 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 26 C 0.15 1.74 10.85 -17.57 -0.19 1.55 16 27 N -0.54 -6.58 9.08 -12.44 -0.11 -6.70 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 32 H 0.08 0.44 5.98 -51.93 -0.31 0.13 16 33 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.09 0.80 7.30 -51.93 -0.38 0.42 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.13 1.00 6.03 -52.49 -0.32 0.69 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 41 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 42 H 0.34 4.65 7.80 -39.29 -0.31 4.34 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.69 7.58 -51.93 -0.39 0.30 16 46 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -32.29 398.45 -9.40 -41.69 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.99 Total: 1.29 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.99 Total: -7.18 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.25 Total: -57.76 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.29 -9.40 -41.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564845257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.226 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds