Wall clock time and date at job start Tue Mar 31 2020 12:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46944 * 2 1 4 4 C 1.46492 * 120.00236 * 269.99656 * 3 2 1 5 5 C 1.53002 * 109.47097 * 270.00482 * 4 3 2 6 6 C 1.39013 * 119.99747 * 89.99640 * 3 2 1 7 7 C 1.39139 * 119.70747 * 5.00142 * 6 3 2 8 8 C 1.38294 * 119.09351 * 180.02562 * 7 6 3 9 9 C 1.38883 * 118.50672 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.33173 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.47086 * 90.00244 * 10 9 8 12 12 C 1.46904 * 110.99779 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46858 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47753 * 305.00128 * 13 12 11 15 15 C 1.47204 * 109.47042 * 64.99895 * 13 12 11 16 16 N 9.69140 * 128.77045 * 40.35138 * 2 1 3 17 17 C 1.52996 * 109.47153 * 184.99851 * 13 12 11 18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 C 1.38013 * 119.33320 * 0.27732 * 9 8 7 27 27 N 1.31974 * 120.85396 * 359.45159 * 26 9 8 28 28 H 1.08991 * 109.47592 * 300.00078 * 1 2 3 29 29 H 1.08999 * 109.46830 * 60.00383 * 1 2 3 30 30 H 1.09004 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47452 * 239.99386 * 2 1 3 32 32 H 1.09006 * 109.46548 * 119.99892 * 2 1 3 33 33 H 1.09001 * 109.46930 * 29.99561 * 4 3 2 34 34 H 1.09000 * 109.47578 * 149.99982 * 4 3 2 35 35 H 1.08993 * 109.47597 * 59.99579 * 5 4 3 36 36 H 1.09001 * 109.47132 * 180.02562 * 5 4 3 37 37 H 1.09011 * 109.46589 * 299.99463 * 5 4 3 38 38 H 1.08001 * 120.44700 * 0.02562 * 7 6 3 39 39 H 1.07997 * 120.74388 * 179.97438 * 8 7 6 40 40 H 1.09003 * 109.47324 * 330.00063 * 10 9 8 41 41 H 1.09004 * 109.47052 * 210.00222 * 10 9 8 42 42 H 1.00897 * 111.00127 * 56.04185 * 11 10 9 43 43 H 1.08997 * 109.46933 * 59.99775 * 12 11 10 44 44 H 1.08996 * 109.47325 * 299.99917 * 12 11 10 45 45 H 1.09004 * 109.47066 * 55.00326 * 17 13 12 46 46 H 1.08994 * 109.47405 * 295.00156 * 17 13 12 47 47 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 48 48 H 1.07996 * 119.57499 * 179.70640 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7075 1.8313 -1.7103 6 6 2.2499 2.0365 1.2039 7 6 2.1165 1.3434 2.4030 8 6 2.3494 2.0079 3.5933 9 6 2.7098 3.3483 3.5446 10 6 2.9738 4.1121 4.8166 11 7 4.3952 3.9990 5.1696 12 6 4.6904 4.7336 6.4071 13 6 6.1765 4.5922 6.7419 14 1 6.4392 3.5355 6.7906 15 6 6.9794 5.2497 5.6978 16 7 7.5988 5.7583 4.8923 17 6 6.4597 5.2509 8.0935 18 6 7.8953 5.0057 8.4808 19 1 8.5413 4.4373 7.8281 20 6 8.3859 5.5124 9.6657 21 7 9.6402 5.3030 10.0011 22 14 7.2688 6.4961 10.7944 23 1 6.6002 5.5785 11.7516 24 1 8.0759 7.4917 11.5446 25 1 6.2425 7.2001 9.9843 26 6 2.8186 3.9751 2.3198 27 7 2.5954 3.3146 1.1993 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8898 32 1 1.8932 -0.5139 0.8901 33 1 1.5818 1.6876 -2.0283 34 1 2.0955 3.1410 -1.1384 35 1 3.8745 0.7622 -1.8406 36 1 3.8894 2.3456 -2.6540 37 1 4.3883 2.2156 -0.9505 38 1 1.8350 0.3007 2.4041 39 1 2.2532 1.4960 4.5393 40 1 2.3656 3.6990 5.6214 41 1 2.7182 5.1615 4.6700 42 1 4.9821 4.3159 4.4126 43 1 4.0940 4.3252 7.2230 44 1 4.4468 5.7872 6.2711 45 1 5.8013 4.8247 8.8504 46 1 6.2816 6.3236 8.0193 47 1 9.9851 5.6591 10.8348 48 1 3.0939 5.0185 2.2777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564845257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:39 Heat of formation + Delta-G solvation = 40.456179 kcal Electronic energy + Delta-G solvation = -25134.789644 eV Core-core repulsion = 21609.635648 eV Total energy + Delta-G solvation = -3525.153995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29542 -39.00610 -38.21103 -36.54993 -35.42407 -34.03346 -33.52073 -32.53853 -31.96655 -29.81778 -28.44634 -26.01694 -25.20627 -23.93854 -23.69824 -23.35214 -22.82179 -21.29646 -18.93633 -18.44802 -18.28398 -17.73549 -16.93925 -16.48613 -16.27339 -15.84401 -15.66028 -15.53378 -15.15189 -14.94014 -14.70269 -14.54834 -14.37253 -14.32686 -14.05091 -13.81504 -13.77467 -13.63721 -13.33893 -13.17803 -13.03446 -12.93626 -12.68134 -12.55890 -12.41992 -12.35124 -12.07942 -11.87956 -11.86725 -11.65262 -11.55856 -11.27359 -10.80023 -10.71473 -10.58203 -10.23573 -9.33835 -8.39447 -8.23270 -6.28934 0.39407 0.58136 1.44193 1.47146 1.57425 1.94491 1.96205 2.03124 2.42643 2.92535 3.12702 3.25279 3.44092 3.60734 3.94635 4.00894 4.09747 4.17802 4.20815 4.26341 4.28278 4.34797 4.45234 4.49957 4.52107 4.55322 4.62394 4.71221 4.80694 4.83159 4.92504 4.94612 4.98296 4.98796 5.01271 5.06457 5.19653 5.26939 5.28229 5.36184 5.49117 5.54710 5.65347 5.74751 6.08974 6.13492 6.27854 6.33518 6.47919 6.75485 6.81676 7.27181 7.35367 8.93763 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.002130 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.912739 B =13143.121091 C =13599.471997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.613 5.613 4 C 0.125 3.875 5 C -0.159 4.159 6 C 0.386 3.614 7 C -0.245 4.245 8 C -0.015 4.015 9 C -0.197 4.197 10 C 0.115 3.885 11 N -0.692 5.692 12 C 0.075 3.925 13 C 0.023 3.977 14 H 0.118 0.882 15 C 0.248 3.752 16 N -0.509 5.509 17 C -0.002 4.002 18 C -0.531 4.531 19 H 0.026 0.974 20 C -0.001 4.001 21 N -0.955 5.955 22 Si 0.951 3.049 23 H -0.256 1.256 24 H -0.297 1.297 25 H -0.236 1.236 26 C 0.137 3.863 27 N -0.566 5.566 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.099 0.901 41 H 0.044 0.956 42 H 0.330 0.670 43 H 0.119 0.881 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.264 0.736 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.021 -11.086 -18.595 33.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.326 5.326 4 C 0.002 3.998 5 C -0.218 4.218 6 C 0.151 3.849 7 C -0.269 4.269 8 C -0.042 4.042 9 C -0.203 4.203 10 C -0.014 4.014 11 N -0.323 5.323 12 C -0.054 4.054 13 C 0.001 3.999 14 H 0.135 0.865 15 C -0.068 4.068 16 N -0.187 5.187 17 C -0.041 4.041 18 C -0.569 4.569 19 H 0.045 0.955 20 C -0.197 4.197 21 N -0.596 5.596 22 Si 0.774 3.226 23 H -0.180 1.180 24 H -0.224 1.224 25 H -0.159 1.159 26 C -0.021 4.021 27 N -0.284 5.284 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.118 0.882 41 H 0.063 0.937 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.073 0.927 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -25.014 -10.572 -20.349 33.934 hybrid contribution 0.516 0.904 1.270 1.642 sum -24.497 -9.668 -19.079 32.521 Atomic orbital electron populations 1.22165 0.95506 1.02968 1.01708 1.21648 0.94511 0.80479 1.04012 1.46730 1.69856 1.13787 1.02261 1.21324 0.96276 0.97782 0.84452 1.22086 0.96882 1.01865 1.00976 1.18671 0.90639 0.88472 0.87100 1.21670 1.11547 1.02187 0.91483 1.21485 0.91012 0.92961 0.98701 1.20518 1.07830 0.96222 0.95700 1.20698 0.88737 0.97703 0.94236 1.60636 1.05490 1.60191 1.05954 1.22034 0.92211 0.97145 0.94050 1.19144 0.92120 1.00116 0.88502 0.86455 1.29820 0.92480 0.91969 0.92554 1.81063 1.10929 1.11934 1.14727 1.19586 0.95363 0.96863 0.92296 1.21425 0.96640 1.33869 1.04991 0.95533 1.26096 0.96515 0.97153 0.99931 1.70099 1.16888 1.47889 1.24741 0.85645 0.79180 0.78809 0.78954 1.18016 1.22370 1.15882 1.22462 0.93157 0.99453 0.86993 1.67142 1.20681 1.08419 1.32134 0.93682 0.92769 0.89782 0.88911 0.89938 0.89211 0.91506 0.92187 0.90766 0.95173 0.83304 0.83002 0.88246 0.93749 0.85274 0.86255 0.93901 0.91580 0.95454 0.92708 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 10.24 71.98 0.74 -0.69 16 2 C 0.12 1.17 5.97 86.38 0.52 1.69 16 3 N -0.61 -10.12 2.59 -703.90 -1.82 -11.94 16 4 C 0.12 1.90 6.19 86.38 0.53 2.43 16 5 C -0.16 -2.45 10.24 71.98 0.74 -1.72 16 6 C 0.39 8.24 7.37 133.06 0.98 9.22 16 7 C -0.24 -4.48 9.27 22.50 0.21 -4.27 16 8 C -0.02 -0.28 9.85 22.44 0.22 -0.06 16 9 C -0.20 -3.97 5.41 -19.76 -0.11 -4.07 16 10 C 0.11 2.07 5.83 85.56 0.50 2.57 16 11 N -0.69 -15.82 6.49 -517.92 -3.36 -19.18 16 12 C 0.08 1.78 5.12 86.30 0.44 2.22 16 13 C 0.02 0.77 2.42 -12.60 -0.03 0.74 16 14 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 15 C 0.25 9.94 12.98 89.44 1.16 11.10 16 16 N -0.51 -22.77 18.54 20.01 0.37 -22.40 16 17 C 0.00 -0.08 3.49 29.85 0.10 0.02 16 18 C -0.53 -28.84 9.15 25.60 0.23 -28.61 16 19 H 0.03 1.64 7.84 -2.91 -0.02 1.62 16 20 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 21 N -0.96 -59.57 13.96 21.45 0.30 -59.28 16 22 Si 0.95 41.44 27.47 68.60 1.88 43.32 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 26 C 0.14 3.11 10.85 84.62 0.92 4.02 16 27 N -0.57 -13.96 9.08 -193.26 -1.75 -15.72 16 28 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.09 0.66 8.07 -2.39 -0.02 0.64 16 32 H 0.08 0.76 5.98 -2.38 -0.01 0.75 16 33 H 0.09 0.94 8.07 -2.39 -0.02 0.92 16 34 H 0.07 1.28 7.30 -2.39 -0.02 1.26 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.15 2.01 6.03 -2.91 -0.02 1.99 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.10 1.46 8.09 -2.39 -0.02 1.44 16 41 H 0.04 0.75 8.09 -2.38 -0.02 0.73 16 42 H 0.33 8.69 7.80 -89.70 -0.70 7.99 16 43 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 2.30 7.58 -2.38 -0.02 2.29 16 46 H 0.03 1.09 7.19 -2.39 -0.02 1.07 16 47 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -72.96 398.45 3.42 -69.54 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.19 Total: 20.61 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 7.62 Total: -4.96 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -6.27 Total: -128.51 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.32 kcal Total: -72.96 3.42 -69.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564845257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.994 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds