Wall clock time and date at job start Tue Mar 31 2020 10:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47102 * 2 1 4 4 N 1.46903 * 109.46443 * 119.99878 * 2 1 3 5 5 C 1.46904 * 111.00012 * 96.89774 * 4 2 1 6 6 C 1.52997 * 109.52257 * 58.02242 * 5 4 2 7 7 O 1.42894 * 109.47132 * 54.09507 * 6 5 4 8 8 C 1.53116 * 109.57223 * 178.18482 * 5 4 2 9 9 C 1.53035 * 109.28005 * 62.28200 * 8 5 4 10 10 N 1.46848 * 109.52581 * 59.17645 * 9 8 5 11 11 C 1.46907 * 111.00158 * 174.16397 * 10 9 8 12 12 C 1.52998 * 109.46629 * 294.20977 * 11 10 9 13 13 C 1.53000 * 109.46708 * 179.97438 * 12 11 10 14 14 S 1.81007 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.76198 * 100.00101 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00068 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00014 * 179.97438 * 15 14 13 18 18 N 1.31633 * 120.00224 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99963 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 60.00515 * 19 17 15 21 21 H 1.48503 * 109.47168 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46940 * 300.00138 * 19 17 15 23 23 C 1.46853 * 111.19637 * 298.25589 * 10 9 8 24 24 C 1.53037 * 109.51852 * 61.74607 * 23 10 9 25 25 H 1.08998 * 109.47403 * 291.89867 * 1 2 3 26 26 H 1.09004 * 109.46904 * 51.89961 * 1 2 3 27 27 H 1.09001 * 109.46899 * 171.89336 * 1 2 3 28 28 H 1.09004 * 109.46807 * 239.99690 * 2 1 3 29 29 H 1.09003 * 109.47249 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47459 * 299.99587 * 3 2 1 31 31 H 1.09004 * 109.47307 * 59.99642 * 3 2 1 32 32 H 1.00905 * 110.99309 * 220.84202 * 4 2 1 33 33 H 1.08997 * 109.47632 * 294.08667 * 6 5 4 34 34 H 1.09001 * 109.46579 * 174.08925 * 6 5 4 35 35 H 0.96706 * 114.00058 * 175.12840 * 7 6 5 36 36 H 1.09001 * 109.50120 * 182.21732 * 8 5 4 37 37 H 1.08999 * 109.50372 * 302.33423 * 8 5 4 38 38 H 1.09006 * 109.46001 * 299.15851 * 9 8 5 39 39 H 1.09000 * 109.46518 * 179.19695 * 9 8 5 40 40 H 1.08998 * 109.46883 * 54.20829 * 11 10 9 41 41 H 1.08991 * 109.46800 * 174.20844 * 11 10 9 42 42 H 1.08998 * 109.47366 * 299.99555 * 12 11 10 43 43 H 1.09003 * 109.47227 * 60.00204 * 12 11 10 44 44 H 1.08994 * 109.47372 * 299.99711 * 13 12 11 45 45 H 1.09003 * 109.46999 * 60.00200 * 13 12 11 46 46 H 0.96997 * 120.00037 * 180.02562 * 18 17 15 47 47 H 1.08996 * 109.46186 * 301.73015 * 23 10 9 48 48 H 1.09000 * 109.45972 * 181.75384 * 23 10 9 49 49 H 1.08998 * 109.50215 * 180.87909 * 24 23 10 50 50 H 1.09001 * 109.50896 * 60.75782 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.3503 -2.0924 0.9011 6 6 3.4038 -2.1438 -0.2072 7 8 4.5272 -1.3435 0.1660 8 6 2.8986 -2.7695 2.1602 9 6 1.8192 -2.7691 3.2450 10 7 0.6340 -3.4866 2.7583 11 6 -0.3703 -3.6262 3.8214 12 6 0.1800 -4.5291 4.9272 13 6 -0.8657 -4.6740 6.0347 14 16 -0.2151 -5.7428 7.3427 15 6 -1.5838 -5.7362 8.4523 16 1 -2.4729 -5.1732 8.2097 17 6 -1.5197 -6.4555 9.6376 18 7 -0.4362 -7.1421 9.9330 19 14 -2.9705 -6.4479 10.8143 20 1 -4.1680 -6.9948 10.1272 21 1 -2.6523 -7.2865 11.9979 22 1 -3.2443 -5.0561 11.2536 23 6 0.0619 -2.8273 1.5774 24 6 1.0889 -2.8296 0.4428 25 1 -0.3634 0.3833 0.9535 26 1 -0.3633 0.6341 -0.8087 27 1 -0.3633 -1.0174 -0.1449 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.8120 -0.2106 1.5971 33 1 2.9759 -1.7601 -1.1333 34 1 3.7252 -3.1747 -0.3553 35 1 5.2663 -1.3885 -0.4561 36 1 3.1804 -3.7965 1.9277 37 1 3.7724 -2.2235 2.5159 38 1 1.5478 -1.7414 3.4869 39 1 2.2016 -3.2632 4.1381 40 1 -0.6006 -2.6444 4.2349 41 1 -1.2770 -4.0685 3.4087 42 1 0.4103 -5.5109 4.5138 43 1 1.0867 -4.0867 5.3399 44 1 -1.0956 -3.6921 6.4481 45 1 -1.7727 -5.1162 5.6223 46 1 -0.3916 -7.6451 10.7612 47 1 -0.2012 -1.7994 1.8271 48 1 -0.8319 -3.3639 1.2592 49 1 0.6697 -2.3264 -0.4285 50 1 1.3423 -3.8575 0.1832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565163318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:47 Heat of formation + Delta-G solvation = -60.097210 kcal Electronic energy + Delta-G solvation = -25304.168174 eV Core-core repulsion = 21877.805057 eV Total energy + Delta-G solvation = -3426.363117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36781 -37.52456 -36.26724 -34.28506 -32.40040 -32.17331 -30.96588 -29.18268 -27.45305 -27.18842 -25.61174 -24.47532 -23.52738 -21.81175 -20.96956 -20.37797 -18.99574 -17.69611 -17.39078 -16.45114 -15.86704 -15.77020 -15.18351 -14.96538 -14.75646 -14.51509 -14.29282 -14.10752 -13.91074 -13.48616 -13.15924 -12.85275 -12.80973 -12.66616 -12.51168 -12.33025 -12.04302 -11.82286 -11.59535 -11.45161 -11.42251 -11.24874 -11.08097 -11.00595 -10.95230 -10.77914 -10.62523 -10.50533 -10.48993 -10.25945 -9.95412 -9.44938 -8.99957 -8.62163 -8.23054 -8.02651 -6.46011 -6.17298 -3.86884 3.25674 3.26858 3.31246 3.61114 3.64491 4.02540 4.16404 4.28616 4.45318 4.59490 4.68969 4.81219 4.89264 4.99550 5.09459 5.15296 5.18343 5.23593 5.34071 5.37044 5.39727 5.45479 5.47928 5.51429 5.58598 5.65351 5.66784 5.71347 5.76581 5.81822 5.88753 5.91960 5.97900 6.00020 6.01926 6.08204 6.17013 6.26124 6.28391 6.47084 6.71339 6.86561 6.92397 7.16228 7.28875 7.30014 7.31150 7.65467 8.41863 9.28727 10.90845 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.002257 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.845035 B =12404.360007 C =12835.005933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.157 4.157 4 N -0.665 5.665 5 C 0.120 3.880 6 C 0.045 3.955 7 O -0.569 6.569 8 C -0.098 4.098 9 C 0.059 3.941 10 N -0.538 5.538 11 C 0.063 3.937 12 C -0.093 4.093 13 C -0.111 4.111 14 S -0.134 6.134 15 C -0.515 4.515 16 H 0.071 0.929 17 C 0.070 3.930 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.063 3.937 24 C -0.105 4.105 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.348 0.652 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.378 0.622 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.267 0.733 47 H 0.050 0.950 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 14.147 -24.883 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.214 4.214 4 N -0.297 5.297 5 C 0.028 3.972 6 C -0.034 4.034 7 O -0.374 6.374 8 C -0.137 4.137 9 C -0.069 4.069 10 N -0.262 5.262 11 C -0.066 4.066 12 C -0.132 4.132 13 C -0.261 4.261 14 S 0.095 5.905 15 C -0.664 4.664 16 H 0.089 0.911 17 C -0.138 4.138 18 N -0.506 5.506 19 Si 0.744 3.256 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.200 1.200 23 C -0.065 4.065 24 C -0.143 4.143 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.168 0.832 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.225 0.775 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.287 13.033 -24.043 28.303 hybrid contribution -1.156 1.340 -0.158 1.777 sum 6.131 14.373 -24.202 28.808 Atomic orbital electron populations 1.22100 0.94925 1.01913 1.01641 1.21525 0.95676 0.93790 0.92349 1.22039 1.00953 0.96230 1.02219 1.60731 1.39521 1.01428 1.28044 1.21051 0.92428 0.89756 0.93915 1.22991 0.87877 0.94429 0.98133 1.86415 1.27612 1.70265 1.53143 1.21566 0.97751 1.00360 0.93987 1.22032 0.90670 0.97060 0.97155 1.61948 1.07110 1.50874 1.06302 1.22112 0.94348 0.98473 0.91692 1.21278 0.98054 1.00223 0.93609 1.23233 1.00755 1.02615 0.99475 1.84615 1.26461 1.61894 1.17552 1.22656 1.01780 1.35591 1.06333 0.91076 1.25010 0.96814 0.94700 0.97298 1.70018 1.26868 1.29306 1.24413 0.86236 0.81549 0.78254 0.79557 1.19959 1.20850 1.19978 1.21962 0.96038 0.97989 0.90508 1.21703 0.94557 1.00010 0.98041 0.92051 0.93229 0.92012 0.93247 0.92593 0.92391 0.92015 0.83204 0.93621 0.93205 0.77525 0.91025 0.91168 0.93774 0.90553 0.95098 0.91196 0.90936 0.91719 0.92425 0.92246 0.92315 0.93144 0.91647 0.91296 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.05 37.16 0.30 -0.85 16 2 C 0.08 0.58 2.47 -67.71 -0.17 0.42 16 3 C -0.16 -1.09 9.06 37.15 0.34 -0.75 16 4 N -0.66 -5.88 4.61 -92.92 -0.43 -6.31 16 5 C 0.12 1.06 0.36 -131.48 -0.05 1.01 16 6 C 0.05 0.33 5.49 37.16 0.20 0.54 16 7 O -0.57 -4.14 12.63 -35.23 -0.44 -4.58 16 8 C -0.10 -1.03 4.88 -26.65 -0.13 -1.16 16 9 C 0.06 0.73 5.15 -3.83 -0.02 0.71 16 10 N -0.54 -6.90 4.66 -234.66 -1.09 -8.00 16 11 C 0.06 0.91 4.96 -3.82 -0.02 0.89 16 12 C -0.09 -1.60 5.15 -26.73 -0.14 -1.74 16 13 C -0.11 -2.34 5.67 37.16 0.21 -2.13 16 14 S -0.13 -3.59 21.44 -107.50 -2.30 -5.90 16 15 C -0.52 -15.11 9.50 30.94 0.29 -14.81 16 16 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 18 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 19 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.06 0.68 4.61 -3.83 -0.02 0.67 16 24 C -0.11 -0.95 4.29 -26.65 -0.11 -1.06 16 25 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 26 H 0.05 0.34 8.13 -51.93 -0.42 -0.09 16 27 H 0.06 0.49 4.71 -51.93 -0.24 0.25 16 28 H 0.05 0.38 5.18 -51.93 -0.27 0.11 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.35 3.31 7.62 -39.29 -0.30 3.01 16 33 H 0.05 0.31 6.16 -51.93 -0.32 -0.01 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.38 1.29 9.12 45.56 0.42 1.70 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.74 7.93 -51.93 -0.41 0.33 16 38 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 39 H 0.08 1.04 6.21 -51.93 -0.32 0.71 16 40 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.07 0.98 7.99 -51.93 -0.41 0.57 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.13 6.43 -51.93 -0.33 0.80 16 44 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 45 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.05 0.58 6.28 -51.93 -0.33 0.25 16 48 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 49 H 0.07 0.55 5.28 -51.93 -0.27 0.28 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -31.66 384.95 -10.40 -42.05 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.23 Total: 2.10 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 0.60 Total: -16.33 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.79 Total: -40.02 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.44 Total: -4.58 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.30 Total: -5.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.66 -10.40 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565163318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.047 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds