Wall clock time and date at job start Tue Mar 31 2020 10:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47102 * 2 1 4 4 N 1.46903 * 109.46443 * 119.99878 * 2 1 3 5 5 C 1.46904 * 111.00012 * 96.89774 * 4 2 1 6 6 C 1.52997 * 109.52257 * 58.02242 * 5 4 2 7 7 O 1.42894 * 109.47132 * 54.09507 * 6 5 4 8 8 C 1.53116 * 109.57223 * 178.18482 * 5 4 2 9 9 C 1.53035 * 109.28005 * 62.28200 * 8 5 4 10 10 N 1.46848 * 109.52581 * 59.17645 * 9 8 5 11 11 C 1.46907 * 111.00158 * 174.16397 * 10 9 8 12 12 C 1.52998 * 109.46629 * 294.20977 * 11 10 9 13 13 C 1.53000 * 109.46708 * 179.97438 * 12 11 10 14 14 S 1.81007 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.76198 * 100.00101 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00068 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00014 * 179.97438 * 15 14 13 18 18 N 1.31633 * 120.00224 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99963 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 60.00515 * 19 17 15 21 21 H 1.48503 * 109.47168 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46940 * 300.00138 * 19 17 15 23 23 C 1.46853 * 111.19637 * 298.25589 * 10 9 8 24 24 C 1.53037 * 109.51852 * 61.74607 * 23 10 9 25 25 H 1.08998 * 109.47403 * 291.89867 * 1 2 3 26 26 H 1.09004 * 109.46904 * 51.89961 * 1 2 3 27 27 H 1.09001 * 109.46899 * 171.89336 * 1 2 3 28 28 H 1.09004 * 109.46807 * 239.99690 * 2 1 3 29 29 H 1.09003 * 109.47249 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47459 * 299.99587 * 3 2 1 31 31 H 1.09004 * 109.47307 * 59.99642 * 3 2 1 32 32 H 1.00905 * 110.99309 * 220.84202 * 4 2 1 33 33 H 1.08997 * 109.47632 * 294.08667 * 6 5 4 34 34 H 1.09001 * 109.46579 * 174.08925 * 6 5 4 35 35 H 0.96706 * 114.00058 * 175.12840 * 7 6 5 36 36 H 1.09001 * 109.50120 * 182.21732 * 8 5 4 37 37 H 1.08999 * 109.50372 * 302.33423 * 8 5 4 38 38 H 1.09006 * 109.46001 * 299.15851 * 9 8 5 39 39 H 1.09000 * 109.46518 * 179.19695 * 9 8 5 40 40 H 1.08998 * 109.46883 * 54.20829 * 11 10 9 41 41 H 1.08991 * 109.46800 * 174.20844 * 11 10 9 42 42 H 1.08998 * 109.47366 * 299.99555 * 12 11 10 43 43 H 1.09003 * 109.47227 * 60.00204 * 12 11 10 44 44 H 1.08994 * 109.47372 * 299.99711 * 13 12 11 45 45 H 1.09003 * 109.46999 * 60.00200 * 13 12 11 46 46 H 0.96997 * 120.00037 * 180.02562 * 18 17 15 47 47 H 1.08996 * 109.46186 * 301.73015 * 23 10 9 48 48 H 1.09000 * 109.45972 * 181.75384 * 23 10 9 49 49 H 1.08998 * 109.50215 * 180.87909 * 24 23 10 50 50 H 1.09001 * 109.50896 * 60.75782 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.3503 -2.0924 0.9011 6 6 3.4038 -2.1438 -0.2072 7 8 4.5272 -1.3435 0.1660 8 6 2.8986 -2.7695 2.1602 9 6 1.8192 -2.7691 3.2450 10 7 0.6340 -3.4866 2.7583 11 6 -0.3703 -3.6262 3.8214 12 6 0.1800 -4.5291 4.9272 13 6 -0.8657 -4.6740 6.0347 14 16 -0.2151 -5.7428 7.3427 15 6 -1.5838 -5.7362 8.4523 16 1 -2.4729 -5.1732 8.2097 17 6 -1.5197 -6.4555 9.6376 18 7 -0.4362 -7.1421 9.9330 19 14 -2.9705 -6.4479 10.8143 20 1 -4.1680 -6.9948 10.1272 21 1 -2.6523 -7.2865 11.9979 22 1 -3.2443 -5.0561 11.2536 23 6 0.0619 -2.8273 1.5774 24 6 1.0889 -2.8296 0.4428 25 1 -0.3634 0.3833 0.9535 26 1 -0.3633 0.6341 -0.8087 27 1 -0.3633 -1.0174 -0.1449 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.8120 -0.2106 1.5971 33 1 2.9759 -1.7601 -1.1333 34 1 3.7252 -3.1747 -0.3553 35 1 5.2663 -1.3885 -0.4561 36 1 3.1804 -3.7965 1.9277 37 1 3.7724 -2.2235 2.5159 38 1 1.5478 -1.7414 3.4869 39 1 2.2016 -3.2632 4.1381 40 1 -0.6006 -2.6444 4.2349 41 1 -1.2770 -4.0685 3.4087 42 1 0.4103 -5.5109 4.5138 43 1 1.0867 -4.0867 5.3399 44 1 -1.0956 -3.6921 6.4481 45 1 -1.7727 -5.1162 5.6223 46 1 -0.3916 -7.6451 10.7612 47 1 -0.2012 -1.7994 1.8271 48 1 -0.8319 -3.3639 1.2592 49 1 0.6697 -2.3264 -0.4285 50 1 1.3423 -3.8575 0.1832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565163318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:46 Heat of formation + Delta-G solvation = -82.884297 kcal Electronic energy + Delta-G solvation = -25305.156296 eV Core-core repulsion = 21877.805057 eV Total energy + Delta-G solvation = -3427.351240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13309 -38.42134 -36.85806 -35.30334 -34.59479 -33.27398 -31.85411 -30.00506 -28.25175 -27.92928 -27.67842 -25.70181 -24.44408 -22.79745 -21.88467 -21.40786 -19.75329 -19.51747 -18.23031 -17.28065 -16.88917 -16.80307 -16.46932 -16.32447 -16.04248 -15.59673 -15.46090 -15.29644 -14.75914 -14.67447 -14.22887 -13.88413 -13.78522 -13.59521 -13.47930 -13.21957 -13.09483 -12.94689 -12.89423 -12.80085 -12.69882 -12.51138 -12.35692 -12.17357 -12.06404 -11.95577 -11.67658 -11.59640 -11.45323 -11.27489 -11.13291 -11.04886 -10.75264 -10.30809 -9.36835 -8.97908 -8.65961 -8.36301 -6.12821 1.31441 1.41269 1.47922 1.75384 2.29294 2.97495 2.97759 3.10071 3.34411 3.48415 3.74451 3.86504 4.00471 4.08601 4.12562 4.25119 4.28530 4.34543 4.40234 4.45139 4.48148 4.52333 4.59778 4.63072 4.65487 4.70572 4.78782 4.82911 4.83861 4.93110 4.97034 4.97763 5.02418 5.08393 5.13391 5.18644 5.22552 5.26470 5.32617 5.33933 5.39862 5.41611 5.54125 6.18640 6.21223 6.28290 6.31504 6.56159 6.85662 7.05374 8.72962 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.002257 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.845035 B =12404.360007 C =12835.005933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 C -0.151 4.151 4 N -0.672 5.672 5 C 0.121 3.879 6 C 0.051 3.949 7 O -0.583 6.583 8 C -0.092 4.092 9 C 0.062 3.938 10 N -0.542 5.542 11 C 0.074 3.926 12 C -0.080 4.080 13 C -0.086 4.086 14 S -0.199 6.199 15 C -0.539 4.539 16 H 0.072 0.928 17 C 0.014 3.986 18 N -0.908 5.908 19 Si 0.995 3.005 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.265 1.265 23 C 0.064 3.936 24 C -0.100 4.100 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.344 0.656 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.395 0.605 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.059 0.941 40 H 0.030 0.970 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.271 0.729 47 H 0.045 0.955 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.243 15.038 -26.406 31.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.209 4.209 4 N -0.304 5.304 5 C 0.029 3.971 6 C -0.028 4.028 7 O -0.391 6.391 8 C -0.130 4.130 9 C -0.066 4.066 10 N -0.267 5.267 11 C -0.056 4.056 12 C -0.119 4.119 13 C -0.235 4.235 14 S 0.030 5.970 15 C -0.686 4.686 16 H 0.090 0.910 17 C -0.191 4.191 18 N -0.544 5.544 19 Si 0.816 3.184 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.190 1.190 23 C -0.063 4.063 24 C -0.138 4.138 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.163 0.837 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.102 0.898 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.472 13.930 -25.595 29.850 hybrid contribution -0.844 1.105 0.248 1.412 sum 5.628 15.035 -25.347 30.003 Atomic orbital electron populations 1.22069 0.94967 1.01971 1.01248 1.21550 0.95525 0.94112 0.91988 1.21984 1.00826 0.95772 1.02312 1.60730 1.39380 1.01456 1.28838 1.20989 0.92902 0.89603 0.93556 1.22860 0.87624 0.94793 0.97563 1.86377 1.28263 1.70240 1.54205 1.21485 0.96954 1.00344 0.94259 1.21973 0.91099 0.96174 0.97344 1.61940 1.06844 1.51556 1.06325 1.21919 0.94827 0.97578 0.91280 1.21146 0.96837 1.00576 0.93296 1.23147 1.01548 1.00800 0.98034 1.84643 1.27866 1.64230 1.20270 1.23007 1.02182 1.36135 1.07316 0.90960 1.26090 1.00021 0.93869 0.99091 1.70156 1.29122 1.29972 1.25157 0.85060 0.77543 0.78776 0.76990 1.18852 1.19898 1.18960 1.22010 0.96801 0.97462 0.90071 1.21671 0.94122 1.00293 0.97709 0.93547 0.92062 0.92130 0.92666 0.92696 0.91340 0.92847 0.83689 0.92575 0.92829 0.75554 0.91427 0.91426 0.94546 0.92296 0.95222 0.90350 0.91635 0.92244 0.92304 0.91847 0.91961 0.93638 0.91144 0.89763 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.05 71.98 0.58 -1.42 16 2 C 0.08 1.05 2.47 44.91 0.11 1.16 16 3 C -0.15 -1.85 9.06 71.98 0.65 -1.20 16 4 N -0.67 -11.06 4.61 -447.88 -2.07 -13.12 16 5 C 0.12 1.96 0.36 3.61 0.00 1.96 16 6 C 0.05 0.64 5.49 71.98 0.40 1.04 16 7 O -0.58 -7.38 12.63 -148.98 -1.88 -9.26 16 8 C -0.09 -1.87 4.88 30.64 0.15 -1.72 16 9 C 0.06 1.53 5.15 86.32 0.44 1.97 16 10 N -0.54 -13.48 4.66 -896.34 -4.17 -17.66 16 11 C 0.07 2.06 4.96 86.30 0.43 2.49 16 12 C -0.08 -2.75 5.15 30.59 0.16 -2.59 16 13 C -0.09 -3.61 5.67 71.98 0.41 -3.20 16 14 S -0.20 -10.96 21.44 -56.49 -1.21 -12.17 16 15 C -0.54 -31.92 9.50 67.95 0.65 -31.27 16 16 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 17 C 0.01 0.82 5.49 84.86 0.47 1.29 16 18 N -0.91 -55.89 13.22 21.65 0.29 -55.60 16 19 Si 0.99 44.71 29.55 68.60 2.03 46.74 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 C 0.06 1.30 4.61 86.32 0.40 1.70 16 24 C -0.10 -1.61 4.29 30.65 0.13 -1.48 16 25 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 26 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 27 H 0.06 0.84 4.71 -2.39 -0.01 0.83 16 28 H 0.06 0.70 5.18 -2.38 -0.01 0.69 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.34 6.21 7.62 -89.69 -0.68 5.53 16 33 H 0.06 0.61 6.16 -2.39 -0.01 0.59 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.39 1.87 9.12 -74.05 -0.68 1.20 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.41 7.93 -2.39 -0.02 1.39 16 38 H 0.04 0.95 7.69 -2.38 -0.02 0.93 16 39 H 0.06 1.64 6.21 -2.39 -0.01 1.62 16 40 H 0.03 0.84 8.12 -2.39 -0.02 0.83 16 41 H 0.08 2.08 7.99 -2.39 -0.02 2.06 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 2.12 6.43 -2.39 -0.02 2.10 16 44 H 0.06 2.45 8.14 -2.40 -0.02 2.43 16 45 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 47 H 0.05 0.99 6.28 -2.39 -0.01 0.97 16 48 H 0.07 1.36 8.02 -2.39 -0.02 1.34 16 49 H 0.08 1.13 5.28 -2.39 -0.01 1.12 16 50 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -68.25 384.95 -2.49 -70.74 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.44 Total: 21.63 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 4.97 Total: -31.30 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -5.96 Total: -86.38 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -1.88 Total: -9.26 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -1.21 Total: -12.17 kcal Total: -68.25 -2.49 -70.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565163318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.144 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds