Wall clock time and date at job start Tue Mar 31 2020 10:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 120.00087 * 2 1 4 4 H 1.48497 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46735 * 299.99866 * 3 2 1 6 6 H 1.48498 * 109.46996 * 59.99526 * 3 2 1 7 7 C 1.37874 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.52879 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.28004 * 177.55875 * 10 9 7 12 12 N 1.46842 * 109.52185 * 300.82126 * 11 10 9 13 13 C 1.38588 * 110.99807 * 185.83856 * 12 11 10 14 14 N 1.31219 * 126.47077 * 292.95867 * 13 12 11 15 15 N 1.28531 * 109.85448 * 180.02562 * 14 13 12 16 16 C 1.30286 * 110.05669 * 0.02562 * 15 14 13 17 17 C 1.50704 * 126.34625 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.46998 * 269.94867 * 17 16 15 19 19 C 1.52993 * 117.50285 * 243.62237 * 18 17 16 20 20 C 1.52997 * 60.00226 * 252.51184 * 19 18 17 21 21 N 1.36453 * 126.47076 * 112.99943 * 13 12 11 22 22 C 1.46497 * 127.13788 * 359.70665 * 21 13 12 23 23 C 1.53002 * 117.49988 * 13.94509 * 22 21 13 24 24 C 1.52998 * 117.49690 * 305.32209 * 22 21 13 25 25 C 1.46850 * 111.20227 * 61.74365 * 12 11 10 26 26 C 1.53034 * 109.51983 * 298.25881 * 25 12 11 27 27 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.56969 * 59.83792 * 9 7 2 29 29 H 1.08997 * 109.50110 * 57.61660 * 10 9 7 30 30 H 1.09001 * 109.49707 * 297.50065 * 10 9 7 31 31 H 1.08995 * 109.46091 * 180.79933 * 11 10 9 32 32 H 1.09006 * 109.45972 * 60.83625 * 11 10 9 33 33 H 1.08994 * 109.47064 * 29.95217 * 17 16 15 34 34 H 1.09008 * 109.46848 * 149.95456 * 17 16 15 35 35 H 1.09001 * 115.55101 * 29.33371 * 18 17 16 36 36 H 1.08994 * 117.50190 * 0.02562 * 19 18 17 37 37 H 1.09006 * 117.50175 * 145.01954 * 19 18 17 38 38 H 1.09000 * 117.49921 * 252.51153 * 20 19 18 39 39 H 1.08998 * 117.49902 * 107.49002 * 20 19 18 40 40 H 1.09000 * 115.54829 * 159.65383 * 22 21 13 41 41 H 1.09005 * 117.49795 * 0.02562 * 23 22 21 42 42 H 1.08998 * 117.49706 * 145.01853 * 23 22 21 43 43 H 1.08997 * 117.49814 * 214.97422 * 24 22 21 44 44 H 1.08995 * 117.49984 * 0.02562 * 24 22 21 45 45 H 1.09003 * 109.45862 * 58.26716 * 25 12 11 46 46 H 1.08998 * 109.46327 * 178.24081 * 25 12 11 47 47 H 1.08996 * 109.50273 * 299.23593 * 26 25 12 48 48 H 1.08999 * 109.50393 * 179.11621 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2451 -3.6639 0.0005 11 6 1.4752 -4.9851 0.0621 12 7 0.6545 -5.0186 1.2792 13 6 0.0448 -6.2536 1.4333 14 7 -0.8875 -6.7646 0.6642 15 7 -1.2245 -7.9260 1.0995 16 6 -0.5334 -8.2222 2.1635 17 6 -0.6331 -9.4924 2.9684 18 6 -1.6812 -9.3177 4.0691 19 6 -1.2008 -9.3899 5.5199 20 6 -2.0163 -10.5401 4.9260 21 7 0.3001 -7.1675 2.4139 22 6 1.2702 -7.0464 3.5049 23 6 1.8604 -5.6608 3.7750 24 6 2.7227 -6.7470 3.1287 25 6 -0.3394 -3.9375 1.2795 26 6 0.3763 -2.5850 1.2543 27 1 -0.4850 0.8401 -0.0004 28 1 0.6220 -2.5576 -0.8877 29 1 2.8998 -3.5835 0.8682 30 1 2.8421 -3.6327 -0.9109 31 1 2.1805 -5.8160 0.0765 32 1 0.8309 -5.0711 -0.8130 33 1 -0.9257 -10.3144 2.3151 34 1 0.3343 -9.7135 3.4196 35 1 -2.4918 -8.6256 3.8409 36 1 -0.1381 -9.5615 5.6903 37 1 -1.6953 -8.7451 6.2465 38 1 -3.0473 -10.6521 5.2617 39 1 -1.4900 -11.4688 4.7055 40 1 1.0961 -7.6956 4.3630 41 1 1.5265 -4.8393 3.1411 42 1 2.0745 -5.3982 4.8109 43 1 3.5042 -7.1989 3.7396 44 1 2.9564 -6.6398 2.0695 45 1 -0.9751 -4.0284 0.3988 46 1 -0.9520 -4.0075 2.1783 47 1 1.0017 -2.4876 2.1417 48 1 -0.3617 -1.7830 1.2387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568109334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:04 Heat of formation + Delta-G solvation = 134.681453 kcal Electronic energy + Delta-G solvation = -27379.541230 eV Core-core repulsion = 23858.473149 eV Total energy + Delta-G solvation = -3521.068081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.87093 -38.49158 -37.85626 -37.39749 -34.08856 -32.75801 -31.84935 -30.58497 -29.95441 -27.35614 -25.68442 -23.83515 -22.80256 -22.70477 -22.27925 -22.18334 -21.64074 -20.48243 -20.03327 -18.59585 -17.35088 -16.55728 -16.20887 -15.92536 -15.88952 -14.92575 -14.64605 -14.52407 -14.04980 -13.92004 -13.83455 -13.39627 -12.95803 -12.63060 -12.52012 -12.43929 -11.92235 -11.84386 -11.80784 -11.68584 -11.45972 -11.38177 -11.05129 -10.92081 -10.83649 -10.66161 -10.54947 -10.37756 -10.31564 -10.23234 -10.15601 -9.56818 -9.51546 -9.10928 -8.84435 -8.72151 -8.33877 -8.23490 -6.00516 -4.06168 1.79047 2.30586 2.97747 3.28742 3.37403 3.40594 3.43310 3.67225 3.94625 4.14408 4.42261 4.43093 4.51076 4.54103 4.65236 4.75028 4.81705 4.91232 5.15835 5.27171 5.29922 5.30317 5.35805 5.48153 5.55743 5.59946 5.63686 5.73942 5.77774 5.88584 5.90888 5.94791 5.99843 6.09972 6.18413 6.20951 6.40258 6.46450 6.50000 6.71975 6.77564 6.90192 7.04130 7.31928 7.37187 7.63850 7.73701 7.96959 8.07942 8.42298 8.91835 8.97592 9.58801 11.05830 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.003134 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.773237 B = 8933.473410 C = 9115.422923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.047 3.953 10 C -0.104 4.104 11 C 0.070 3.930 12 N -0.461 5.461 13 C 0.360 3.640 14 N -0.314 5.314 15 N -0.288 5.288 16 C 0.174 3.826 17 C 0.005 3.995 18 C -0.149 4.149 19 C -0.182 4.182 20 C -0.173 4.173 21 N -0.435 5.435 22 C 0.049 3.951 23 C -0.168 4.168 24 C -0.172 4.172 25 C 0.067 3.933 26 C -0.103 4.103 27 H 0.260 0.740 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.045 0.955 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 -18.592 11.605 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.028 3.972 10 C -0.142 4.142 11 C -0.057 4.057 12 N -0.188 5.188 13 C 0.004 3.996 14 N -0.157 5.157 15 N -0.128 5.128 16 C -0.093 4.093 17 C -0.035 4.035 18 C -0.168 4.168 19 C -0.219 4.219 20 C -0.210 4.210 21 N -0.127 5.127 22 C -0.055 4.055 23 C -0.206 4.206 24 C -0.210 4.210 25 C -0.059 4.059 26 C -0.141 4.141 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.790 -18.502 10.854 21.465 hybrid contribution 0.841 0.929 0.512 1.354 sum 1.631 -17.573 11.366 20.992 Atomic orbital electron populations 1.69871 1.05850 1.26328 1.50854 1.24969 0.94828 0.99040 0.95149 0.86580 0.80144 0.83995 0.77524 1.19849 1.21126 1.21111 1.21188 0.92889 0.90450 1.50313 0.92616 1.18712 0.92651 0.91733 0.94080 1.21725 0.98680 0.92980 1.00852 1.22239 0.95190 0.99735 0.88503 1.59129 1.23004 0.96811 1.39849 1.22738 0.96150 0.92078 0.88593 1.74691 1.13328 1.04034 1.23650 1.74004 1.21723 1.08434 1.08680 1.24491 0.93851 0.92600 0.98330 1.19511 0.98902 0.90501 0.94572 1.22236 1.01263 1.02243 0.91096 1.23089 1.00393 1.02374 0.96028 1.22970 1.01258 0.93063 1.03709 1.45770 1.30109 1.14550 1.22240 1.21905 0.88747 1.04267 0.90618 1.23865 1.00333 0.93150 1.03241 1.23357 0.91548 1.03102 1.02957 1.22414 0.92299 0.90833 1.00327 1.21747 1.00433 0.92281 0.99636 0.93048 0.95624 0.92245 0.92370 0.92584 0.93611 0.87963 0.89997 0.87343 0.88750 0.88710 0.88564 0.88511 0.84472 0.83625 0.87977 0.87779 0.88052 0.93551 0.92541 0.93626 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.78 11.37 55.43 0.63 -24.15 16 2 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.43 8.56 -34.44 -0.29 -13.73 16 8 H 0.06 1.45 7.75 -52.48 -0.41 1.05 16 9 C 0.05 1.11 2.16 -91.65 -0.20 0.91 16 10 C -0.10 -2.06 5.32 -26.65 -0.14 -2.20 16 11 C 0.07 1.27 5.40 -3.84 -0.02 1.24 16 12 N -0.46 -8.18 1.93 -174.55 -0.34 -8.51 16 13 C 0.36 6.37 6.23 -318.86 -1.99 4.39 16 14 N -0.31 -6.21 12.15 30.32 0.37 -5.85 16 15 N -0.29 -5.18 12.18 32.99 0.40 -4.78 16 16 C 0.17 2.49 7.28 -154.02 -1.12 1.37 16 17 C 0.00 0.05 5.80 -27.88 -0.16 -0.12 16 18 C -0.15 -1.32 5.72 -90.63 -0.52 -1.84 16 19 C -0.18 -1.28 10.18 -26.74 -0.27 -1.55 16 20 C -0.17 -1.17 10.25 -26.73 -0.27 -1.44 16 21 N -0.44 -6.33 3.15 -107.01 -0.34 -6.67 16 22 C 0.05 0.55 6.60 -67.93 -0.45 0.10 16 23 C -0.17 -1.97 9.86 -26.73 -0.26 -2.23 16 24 C -0.17 -1.80 10.35 -26.73 -0.28 -2.07 16 25 C 0.07 1.34 5.32 -3.83 -0.02 1.32 16 26 C -0.10 -2.29 5.12 -26.65 -0.14 -2.43 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.62 7.55 -51.92 -0.39 0.22 16 35 H 0.11 1.18 8.07 -51.93 -0.42 0.76 16 36 H 0.09 0.56 8.03 -51.93 -0.42 0.14 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.14 1.15 7.90 -51.93 -0.41 0.74 16 41 H 0.15 2.19 5.55 -51.93 -0.29 1.90 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.10 1.26 7.73 -51.93 -0.40 0.86 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 47 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.10 2.53 6.17 -51.93 -0.32 2.21 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -29.81 381.64 -12.85 -42.66 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.08 Total: 2.48 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -6.23 Total: -16.73 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.73 Total: -49.96 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.81 -12.85 -42.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568109334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.344 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds