Wall clock time and date at job start Tue Mar 31 2020 10:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 120.00087 * 2 1 4 4 H 1.48497 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46735 * 299.99866 * 3 2 1 6 6 H 1.48498 * 109.46996 * 59.99526 * 3 2 1 7 7 C 1.37874 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.52879 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.28004 * 177.55875 * 10 9 7 12 12 N 1.46842 * 109.52185 * 300.82126 * 11 10 9 13 13 C 1.38588 * 110.99807 * 185.83856 * 12 11 10 14 14 N 1.31219 * 126.47077 * 292.95867 * 13 12 11 15 15 N 1.28531 * 109.85448 * 180.02562 * 14 13 12 16 16 C 1.30286 * 110.05669 * 0.02562 * 15 14 13 17 17 C 1.50704 * 126.34625 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.46998 * 269.94867 * 17 16 15 19 19 C 1.52993 * 117.50285 * 243.62237 * 18 17 16 20 20 C 1.52997 * 60.00226 * 252.51184 * 19 18 17 21 21 N 1.36453 * 126.47076 * 112.99943 * 13 12 11 22 22 C 1.46497 * 127.13788 * 359.70665 * 21 13 12 23 23 C 1.53002 * 117.49988 * 13.94509 * 22 21 13 24 24 C 1.52998 * 117.49690 * 305.32209 * 22 21 13 25 25 C 1.46850 * 111.20227 * 61.74365 * 12 11 10 26 26 C 1.53034 * 109.51983 * 298.25881 * 25 12 11 27 27 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.56969 * 59.83792 * 9 7 2 29 29 H 1.08997 * 109.50110 * 57.61660 * 10 9 7 30 30 H 1.09001 * 109.49707 * 297.50065 * 10 9 7 31 31 H 1.08995 * 109.46091 * 180.79933 * 11 10 9 32 32 H 1.09006 * 109.45972 * 60.83625 * 11 10 9 33 33 H 1.08994 * 109.47064 * 29.95217 * 17 16 15 34 34 H 1.09008 * 109.46848 * 149.95456 * 17 16 15 35 35 H 1.09001 * 115.55101 * 29.33371 * 18 17 16 36 36 H 1.08994 * 117.50190 * 0.02562 * 19 18 17 37 37 H 1.09006 * 117.50175 * 145.01954 * 19 18 17 38 38 H 1.09000 * 117.49921 * 252.51153 * 20 19 18 39 39 H 1.08998 * 117.49902 * 107.49002 * 20 19 18 40 40 H 1.09000 * 115.54829 * 159.65383 * 22 21 13 41 41 H 1.09005 * 117.49795 * 0.02562 * 23 22 21 42 42 H 1.08998 * 117.49706 * 145.01853 * 23 22 21 43 43 H 1.08997 * 117.49814 * 214.97422 * 24 22 21 44 44 H 1.08995 * 117.49984 * 0.02562 * 24 22 21 45 45 H 1.09003 * 109.45862 * 58.26716 * 25 12 11 46 46 H 1.08998 * 109.46327 * 178.24081 * 25 12 11 47 47 H 1.08996 * 109.50273 * 299.23593 * 26 25 12 48 48 H 1.08999 * 109.50393 * 179.11621 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2451 -3.6639 0.0005 11 6 1.4752 -4.9851 0.0621 12 7 0.6545 -5.0186 1.2792 13 6 0.0448 -6.2536 1.4333 14 7 -0.8875 -6.7646 0.6642 15 7 -1.2245 -7.9260 1.0995 16 6 -0.5334 -8.2222 2.1635 17 6 -0.6331 -9.4924 2.9684 18 6 -1.6812 -9.3177 4.0691 19 6 -1.2008 -9.3899 5.5199 20 6 -2.0163 -10.5401 4.9260 21 7 0.3001 -7.1675 2.4139 22 6 1.2702 -7.0464 3.5049 23 6 1.8604 -5.6608 3.7750 24 6 2.7227 -6.7470 3.1287 25 6 -0.3394 -3.9375 1.2795 26 6 0.3763 -2.5850 1.2543 27 1 -0.4850 0.8401 -0.0004 28 1 0.6220 -2.5576 -0.8877 29 1 2.8998 -3.5835 0.8682 30 1 2.8421 -3.6327 -0.9109 31 1 2.1805 -5.8160 0.0765 32 1 0.8309 -5.0711 -0.8130 33 1 -0.9257 -10.3144 2.3151 34 1 0.3343 -9.7135 3.4196 35 1 -2.4918 -8.6256 3.8409 36 1 -0.1381 -9.5615 5.6903 37 1 -1.6953 -8.7451 6.2465 38 1 -3.0473 -10.6521 5.2617 39 1 -1.4900 -11.4688 4.7055 40 1 1.0961 -7.6956 4.3630 41 1 1.5265 -4.8393 3.1411 42 1 2.0745 -5.3982 4.8109 43 1 3.5042 -7.1989 3.7396 44 1 2.9564 -6.6398 2.0695 45 1 -0.9751 -4.0284 0.3988 46 1 -0.9520 -4.0075 2.1783 47 1 1.0017 -2.4876 2.1417 48 1 -0.3617 -1.7830 1.2387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568109334.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:03 Heat of formation + Delta-G solvation = 122.851953 kcal Electronic energy + Delta-G solvation = -27380.054196 eV Core-core repulsion = 23858.473149 eV Total energy + Delta-G solvation = -3521.581046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.11991 -40.03376 -38.58174 -38.30724 -35.87164 -33.86977 -33.53590 -31.88987 -31.62169 -28.63811 -27.41320 -25.06276 -24.14096 -23.91543 -23.32895 -23.21813 -22.63041 -21.53047 -21.13151 -20.30890 -18.58616 -18.25920 -17.62717 -17.18996 -16.67920 -16.52513 -15.79828 -15.77057 -15.31558 -15.03622 -14.85857 -14.70789 -14.46114 -14.21171 -14.13907 -13.62541 -13.29017 -12.97342 -12.86975 -12.79395 -12.64860 -12.56430 -12.44414 -12.32915 -12.30415 -12.14269 -11.99791 -11.84549 -11.47164 -11.36911 -11.25891 -10.93411 -10.88050 -10.75698 -10.53203 -10.40750 -10.07413 -9.73466 -8.06686 -6.19813 0.58891 1.16674 1.42358 1.45008 1.55612 1.68472 2.45502 2.60320 2.80023 2.85776 3.21293 3.27151 3.56274 3.77274 3.82142 3.85479 3.94219 3.97777 4.06183 4.09789 4.18342 4.22110 4.36694 4.40383 4.46016 4.53300 4.65275 4.72102 4.77185 4.82750 4.84114 4.86752 4.88741 4.97667 4.98593 5.06922 5.14882 5.18460 5.21216 5.27602 5.31378 5.44929 5.48610 5.58576 5.67647 5.72422 5.99222 6.13131 6.27649 6.38728 6.91754 7.48591 7.63621 8.98573 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.003134 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.773237 B = 8933.473410 C = 9115.422923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.044 3.956 10 C -0.091 4.091 11 C 0.079 3.921 12 N -0.442 5.442 13 C 0.343 3.657 14 N -0.355 5.355 15 N -0.331 5.331 16 C 0.197 3.803 17 C 0.009 3.991 18 C -0.169 4.169 19 C -0.172 4.172 20 C -0.161 4.161 21 N -0.431 5.431 22 C 0.042 3.958 23 C -0.181 4.181 24 C -0.157 4.157 25 C 0.084 3.916 26 C -0.087 4.087 27 H 0.259 0.741 28 H -0.014 1.014 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.176 0.824 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.140 0.860 44 H 0.080 0.920 45 H 0.020 0.980 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.873 -20.760 14.270 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.025 3.975 10 C -0.129 4.129 11 C -0.048 4.048 12 N -0.168 5.168 13 C -0.015 4.015 14 N -0.198 5.198 15 N -0.171 5.171 16 C -0.071 4.071 17 C -0.030 4.030 18 C -0.189 4.189 19 C -0.209 4.209 20 C -0.197 4.197 21 N -0.121 5.121 22 C -0.061 4.061 23 C -0.218 4.218 24 C -0.195 4.195 25 C -0.043 4.043 26 C -0.125 4.125 27 H 0.068 0.932 28 H 0.004 0.996 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.133 0.867 40 H 0.193 0.807 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.158 0.842 44 H 0.098 0.902 45 H 0.038 0.962 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.055 -20.686 13.530 24.906 hybrid contribution 0.096 1.537 -0.289 1.567 sum 3.152 -19.149 13.241 23.493 Atomic orbital electron populations 1.70026 1.07244 1.26983 1.51632 1.25742 0.95584 1.02385 0.94950 0.85579 0.79262 0.79901 0.77334 1.18869 1.21216 1.20717 1.21534 0.93138 0.91619 1.50007 0.92432 1.18669 0.93071 0.92859 0.92879 1.21538 0.97802 0.92027 1.01522 1.22118 0.95095 0.99616 0.87997 1.59109 1.21868 0.96623 1.39203 1.22616 0.96679 0.92320 0.89843 1.74574 1.14584 1.05261 1.25385 1.73918 1.23765 1.08310 1.11075 1.25418 0.91500 0.93304 0.96919 1.19777 1.00839 0.87994 0.94401 1.22034 1.00928 1.03759 0.92140 1.23210 1.01672 1.01958 0.94067 1.23072 1.01716 0.93122 1.01832 1.45980 1.30450 1.13590 1.22118 1.22443 0.88422 1.04704 0.90502 1.23803 1.01442 0.92422 1.04165 1.23421 0.91826 1.02023 1.02238 1.22067 0.92196 0.90679 0.99370 1.21442 0.99418 0.92663 0.99025 0.93157 0.99584 0.91272 0.91832 0.90192 0.95795 0.87233 0.86760 0.90367 0.86601 0.88962 0.88493 0.86707 0.80727 0.87157 0.85442 0.84169 0.90191 0.96181 0.91887 0.93328 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.00 11.37 21.45 0.24 -52.76 16 2 C 0.01 0.64 5.31 84.65 0.45 1.09 16 3 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.52 -28.18 8.56 25.60 0.22 -27.96 16 8 H 0.06 3.01 7.75 -2.91 -0.02 2.98 16 9 C 0.04 2.16 2.16 -11.46 -0.02 2.14 16 10 C -0.09 -3.63 5.32 30.65 0.16 -3.46 16 11 C 0.08 2.90 5.40 86.33 0.47 3.36 16 12 N -0.44 -16.00 1.93 -706.15 -1.36 -17.36 16 13 C 0.34 12.25 6.23 260.11 1.62 13.87 16 14 N -0.35 -14.55 12.15 -58.00 -0.70 -15.25 16 15 N -0.33 -12.10 12.18 -49.54 -0.60 -12.71 16 16 C 0.20 5.37 7.28 137.64 1.00 6.37 16 17 C 0.01 0.15 5.80 29.85 0.17 0.32 16 18 C -0.17 -2.61 5.72 -10.80 -0.06 -2.67 16 19 C -0.17 -1.78 10.18 30.59 0.31 -1.47 16 20 C -0.16 -1.65 10.25 30.59 0.31 -1.33 16 21 N -0.43 -11.90 3.15 -492.47 -1.55 -13.45 16 22 C 0.04 0.79 6.60 44.99 0.30 1.09 16 23 C -0.18 -3.75 9.86 30.60 0.30 -3.45 16 24 C -0.16 -2.73 10.35 30.59 0.32 -2.41 16 25 C 0.08 3.51 5.32 86.32 0.46 3.97 16 26 C -0.09 -4.07 5.12 30.65 0.16 -3.92 16 27 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 28 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 31 H 0.08 2.58 7.70 -2.39 -0.02 2.56 16 32 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.11 1.13 7.55 -2.38 -0.02 1.11 16 35 H 0.08 1.69 8.07 -2.39 -0.02 1.67 16 36 H 0.12 0.73 8.03 -2.39 -0.02 0.71 16 37 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 40 H 0.18 1.97 7.90 -2.39 -0.02 1.95 16 41 H 0.11 3.21 5.55 -2.38 -0.01 3.19 16 42 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.08 1.78 7.73 -2.39 -0.02 1.76 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 2.52 8.10 -2.39 -0.02 2.50 16 47 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.07 3.63 6.17 -2.39 -0.01 3.61 16 Total: -1.00 -69.14 381.64 5.15 -64.00 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.93 Total: 16.84 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 6.16 Total: -14.46 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -3.98 Total: -111.52 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -69.14 5.15 -64.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568109334.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.848 kcal (2) G-P(sol) polarization free energy of solvation -69.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds