Wall clock time and date at job start Tue Mar 31 2020 11:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99784 * 2 1 4 4 H 1.48491 * 109.47165 * 239.99673 * 3 2 1 5 5 H 1.48496 * 109.47179 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46812 * 119.99563 * 3 2 1 7 7 C 1.37878 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00262 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.53121 * 109.52323 * 184.99814 * 10 9 7 12 12 C 1.53033 * 109.27614 * 182.43919 * 11 10 9 13 13 N 1.46847 * 109.52479 * 59.18384 * 12 11 10 14 14 C 1.38624 * 110.99884 * 174.15725 * 13 12 11 15 15 C 1.39175 * 120.48458 * 180.02562 * 14 13 12 16 16 C 1.39132 * 118.27011 * 179.97438 * 15 14 13 17 17 N 1.38626 * 120.48375 * 179.97438 * 16 15 14 18 18 C 1.48537 * 110.99852 * 62.60640 * 17 16 15 19 19 C 1.54940 * 103.22482 * 159.72078 * 18 17 16 20 20 C 1.54589 * 102.92359 * 322.58205 * 19 18 17 21 21 C 1.47897 * 111.00176 * 179.97438 * 17 16 15 22 22 N 1.33194 * 119.03027 * 359.75364 * 16 15 14 23 23 C 1.31730 * 120.87946 * 0.50758 * 22 16 15 24 24 N 1.31763 * 121.91161 * 359.47697 * 23 22 16 25 25 C 1.46844 * 111.19442 * 298.25317 * 13 12 11 26 26 C 1.53035 * 109.52443 * 61.74552 * 25 13 12 27 27 H 0.96999 * 120.00297 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47469 * 60.00254 * 9 7 2 29 29 H 1.09003 * 109.47639 * 299.99828 * 9 7 2 30 30 H 1.08999 * 109.57066 * 305.15967 * 10 9 7 31 31 H 1.09000 * 109.50093 * 62.50390 * 11 10 9 32 32 H 1.08999 * 109.50504 * 302.38198 * 11 10 9 33 33 H 1.09004 * 109.46763 * 299.16235 * 12 11 10 34 34 H 1.09001 * 109.46333 * 179.19691 * 12 11 10 35 35 H 1.08002 * 120.86527 * 359.96010 * 15 14 13 36 36 H 1.09003 * 110.66576 * 278.14853 * 18 17 16 37 37 H 1.08993 * 110.66680 * 41.28471 * 18 17 16 38 38 H 1.09004 * 110.71969 * 204.22321 * 19 18 17 39 39 H 1.08998 * 110.87666 * 81.02117 * 19 18 17 40 40 H 1.09005 * 110.31237 * 263.04613 * 20 19 18 41 41 H 1.08995 * 110.31138 * 140.87302 * 20 19 18 42 42 H 1.09005 * 109.91616 * 333.51001 * 21 17 16 43 43 H 1.09003 * 109.91888 * 94.80544 * 21 17 16 44 44 H 1.08002 * 119.04653 * 179.76410 * 23 22 16 45 45 H 1.09004 * 109.46312 * 181.75846 * 25 13 12 46 46 H 1.08998 * 109.46643 * 301.72541 * 25 13 12 47 47 H 1.08997 * 109.50893 * 180.87770 * 26 25 13 48 48 H 1.08996 * 109.50696 * 60.75432 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4852 -4.9853 -0.1239 12 6 2.4794 -6.1470 -0.0608 13 7 3.2089 -6.1001 1.2128 14 6 4.0241 -7.2116 1.3596 15 6 4.8063 -7.3678 2.5000 16 6 5.6071 -8.5013 2.5997 17 7 6.4049 -8.7028 3.7154 18 6 5.5794 -8.8344 4.9432 19 6 6.5290 -9.5548 5.9331 20 6 7.2882 -10.5478 5.0235 21 6 7.1638 -9.9672 3.6029 22 7 5.5925 -9.3920 1.6096 23 6 4.8416 -9.2056 0.5434 24 7 4.0699 -8.1458 0.4117 25 6 3.9842 -4.8590 1.3351 26 6 3.0350 -3.6588 1.3138 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.9328 -3.5556 -0.8373 31 1 0.9551 -5.0114 -1.0759 32 1 0.7702 -5.0734 0.6940 33 1 3.1857 -6.0659 -0.8871 34 1 1.9400 -7.0912 -0.1358 35 1 4.7924 -6.6284 3.2871 36 1 5.2985 -7.8528 5.3250 37 1 4.6946 -9.4404 4.7488 38 1 5.9599 -10.0874 6.6951 39 1 7.2194 -8.8479 6.3933 40 1 6.8258 -11.5337 5.0708 41 1 8.3359 -10.6058 5.3183 42 1 6.6272 -10.6665 2.9616 43 1 8.1551 -9.7703 3.1946 44 1 4.8555 -9.9452 -0.2435 45 1 4.5376 -4.8675 2.2742 46 1 4.6834 -4.7839 0.5023 47 1 3.6119 -2.7370 1.3889 48 1 2.3443 -3.7260 2.1543 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569335284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:16 Heat of formation + Delta-G solvation = 42.124179 kcal Electronic energy + Delta-G solvation = -26326.995349 eV Core-core repulsion = 22801.913683 eV Total energy + Delta-G solvation = -3525.081665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.45109 -40.56562 -39.37541 -36.57779 -34.76557 -34.31026 -32.52817 -32.07019 -30.78520 -30.04903 -29.33134 -26.23223 -25.51878 -24.38440 -23.70598 -22.81867 -21.95047 -21.61150 -20.58667 -19.05991 -18.61654 -18.28170 -17.16433 -16.77206 -16.55941 -16.47922 -16.12243 -15.73114 -15.62232 -15.18834 -15.08034 -14.81444 -14.62328 -14.29042 -14.07938 -13.78009 -13.58338 -13.30344 -13.20535 -13.00420 -12.76699 -12.56905 -12.32842 -12.30337 -12.18852 -12.16244 -12.02707 -11.72040 -11.64176 -11.46615 -11.30354 -11.20784 -10.94129 -10.76330 -10.50517 -10.31772 -9.73223 -9.40764 -8.15641 -6.25075 -0.01237 0.04705 1.41284 1.43484 1.51054 2.26898 2.41480 2.43044 2.84564 3.17646 3.20753 3.37319 3.60980 3.80984 3.85425 3.93064 3.96420 4.03137 4.11615 4.21352 4.29260 4.34269 4.39959 4.47521 4.49999 4.51953 4.65830 4.67253 4.76787 4.84251 4.87832 4.90765 4.93628 4.97458 5.06870 5.12796 5.18577 5.23260 5.31983 5.34346 5.40491 5.46942 5.56371 5.63032 5.80298 5.89132 5.91898 6.04912 6.21047 6.30493 6.91007 7.15791 7.43265 8.95967 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.002541 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.615797 B =11015.648361 C =11778.403823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.035 3.965 10 C -0.077 4.077 11 C -0.109 4.109 12 C 0.083 3.917 13 N -0.476 5.476 14 C 0.363 3.637 15 C -0.260 4.260 16 C 0.356 3.644 17 N -0.468 5.468 18 C 0.042 3.958 19 C -0.118 4.118 20 C -0.128 4.128 21 C 0.033 3.967 22 N -0.586 5.586 23 C 0.339 3.661 24 N -0.590 5.590 25 C 0.073 3.927 26 C -0.094 4.094 27 H 0.261 0.739 28 H -0.013 1.013 29 H -0.009 1.009 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.225 0.775 45 H 0.098 0.902 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.432 -22.773 9.773 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.080 0.920 9 C -0.002 4.002 10 C -0.095 4.095 11 C -0.147 4.147 12 C -0.043 4.043 13 N -0.193 5.193 14 C 0.125 3.875 15 C -0.288 4.288 16 C 0.117 3.883 17 N -0.187 5.187 18 C -0.083 4.083 19 C -0.156 4.156 20 C -0.166 4.166 21 C -0.093 4.093 22 N -0.309 5.309 23 C 0.048 3.952 24 N -0.313 5.313 25 C -0.052 4.052 26 C -0.132 4.132 27 H 0.070 0.930 28 H 0.006 0.994 29 H 0.009 0.991 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.171 0.829 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.241 0.759 45 H 0.117 0.883 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.284 -22.789 9.543 28.539 hybrid contribution -0.196 1.280 -0.364 1.345 sum 14.089 -21.509 9.179 27.302 Atomic orbital electron populations 1.70096 1.07768 1.27579 1.52130 1.25940 0.95666 1.03156 0.95152 0.85595 0.78309 0.78587 0.79140 1.19416 1.21233 1.19041 1.21622 0.93445 0.92016 1.49640 0.91954 1.18984 0.93922 0.92756 0.94538 1.21131 0.97099 0.94217 0.97100 1.21682 0.97665 0.93366 1.01984 1.21887 0.95758 0.99256 0.87411 1.58798 1.24186 1.01203 1.35101 1.20103 0.86770 0.91279 0.89305 1.21767 1.03547 1.02030 1.01420 1.20160 0.87205 0.89019 0.91871 1.61782 1.20440 1.35518 1.00923 1.23441 0.95012 1.02391 0.87473 1.22538 0.97908 0.98175 0.96934 1.22452 1.02439 0.99115 0.92585 1.22950 0.98568 0.88792 0.99017 1.68381 1.27019 1.30755 1.04708 1.25186 0.84599 0.92051 0.93319 1.68460 1.26156 1.06270 1.30377 1.22292 0.94381 0.86140 1.02406 1.21471 0.97813 0.96194 0.97706 0.92989 0.99449 0.99075 0.93007 0.91136 0.92209 0.93540 0.89536 0.82915 0.88411 0.93166 0.88627 0.89721 0.90272 0.89391 0.90866 0.90320 0.75931 0.88338 0.93746 0.90980 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.53 -29.40 8.44 25.60 0.22 -29.18 16 8 H 0.06 3.29 7.08 -2.91 -0.02 3.27 16 9 C 0.04 1.82 4.45 29.85 0.13 1.95 16 10 C -0.08 -3.09 2.20 -10.71 -0.02 -3.11 16 11 C -0.11 -3.77 5.38 30.65 0.16 -3.60 16 12 C 0.08 2.51 4.67 86.32 0.40 2.92 16 13 N -0.48 -14.03 4.68 -701.66 -3.28 -17.32 16 14 C 0.36 10.08 6.40 132.97 0.85 10.93 16 15 C -0.26 -6.43 8.67 22.71 0.20 -6.23 16 16 C 0.36 8.33 6.21 132.95 0.83 9.15 16 17 N -0.47 -9.06 5.30 -689.08 -3.65 -12.71 16 18 C 0.04 0.62 6.08 86.65 0.53 1.14 16 19 C -0.12 -1.15 7.06 31.80 0.22 -0.92 16 20 C -0.13 -1.31 6.93 31.46 0.22 -1.09 16 21 C 0.03 0.54 6.36 86.44 0.55 1.09 16 22 N -0.59 -13.63 8.30 -197.84 -1.64 -15.27 16 23 C 0.34 7.55 12.28 180.91 2.22 9.77 16 24 N -0.59 -15.78 8.84 -197.82 -1.75 -17.53 16 25 C 0.07 2.11 5.25 86.33 0.45 2.57 16 26 C -0.09 -3.35 5.15 30.65 0.16 -3.19 16 27 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.43 8.12 -2.38 -0.02 1.41 16 34 H 0.09 2.52 7.73 -2.39 -0.02 2.50 16 35 H 0.15 3.44 7.22 -2.91 -0.02 3.42 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 0.81 7.99 -2.39 -0.02 0.79 16 38 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 1.35 6.52 -2.38 -0.02 1.34 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.22 3.26 8.06 -2.91 -0.02 3.23 16 45 H 0.10 2.46 6.74 -2.38 -0.02 2.44 16 46 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 2.70 7.05 -2.39 -0.02 2.68 16 48 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -66.39 372.93 0.49 -65.90 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.93 Total: 15.00 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 7.58 Total: -7.45 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -10.04 Total: -119.55 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -66.39 0.49 -65.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569335284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.025 kcal (2) G-P(sol) polarization free energy of solvation -66.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds