Wall clock time and date at job start Tue Mar 31 2020 11:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50708 * 119.99361 * 2 1 4 4 N 1.46494 * 109.47291 * 125.50587 * 3 2 1 5 5 C 1.36742 * 127.13486 * 275.65163 * 4 3 2 6 6 C 1.50699 * 126.34827 * 359.95915 * 5 4 3 7 7 C 1.53779 * 113.61588 * 219.14219 * 6 5 4 8 8 C 1.53954 * 87.01968 * 220.05086 * 7 6 5 9 9 C 1.53778 * 113.61421 * 121.53164 * 6 5 4 10 10 N 1.30293 * 107.30216 * 179.83242 * 5 4 3 11 11 N 1.28531 * 110.05809 * 0.44053 * 10 5 4 12 12 C 1.31221 * 109.85748 * 359.71690 * 11 10 5 13 13 N 1.38574 * 126.47226 * 180.02562 * 12 11 10 14 14 C 1.46851 * 110.99876 * 106.69417 * 13 12 11 15 15 C 1.53031 * 109.52764 * 174.15939 * 14 13 12 16 16 C 1.53122 * 109.27799 * 59.18165 * 15 14 13 17 17 C 1.50693 * 109.52643 * 182.44317 * 16 15 14 18 18 H 1.07998 * 120.00234 * 119.67960 * 17 16 15 19 19 C 1.37872 * 119.99931 * 299.68483 * 17 16 15 20 20 N 1.31516 * 120.00519 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00101 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.46951 * 90.00317 * 21 19 17 23 23 H 1.48496 * 109.47389 * 210.00526 * 21 19 17 24 24 H 1.48505 * 109.46925 * 330.00342 * 21 19 17 25 25 C 1.53121 * 109.15773 * 302.34713 * 16 15 14 26 26 C 1.46845 * 111.00251 * 342.48641 * 13 12 11 27 27 H 1.08001 * 119.99538 * 180.27992 * 1 2 3 28 28 H 1.07991 * 120.00212 * 0.28315 * 1 2 3 29 29 H 1.07991 * 120.00212 * 179.71685 * 2 1 3 30 30 H 1.09006 * 109.46623 * 245.50042 * 3 2 1 31 31 H 1.08994 * 109.47115 * 5.49980 * 3 2 1 32 32 H 1.08996 * 112.84790 * 350.33999 * 6 5 4 33 33 H 1.09001 * 113.61407 * 334.56458 * 7 6 5 34 34 H 1.08996 * 113.61823 * 105.46809 * 7 6 5 35 35 H 1.09003 * 113.53248 * 270.80863 * 8 7 6 36 36 H 1.08998 * 113.74783 * 139.94192 * 8 7 6 37 37 H 1.08995 * 113.61575 * 254.53240 * 9 6 5 38 38 H 1.09006 * 113.61514 * 25.43433 * 9 6 5 39 39 H 1.08994 * 109.46295 * 294.18008 * 14 13 12 40 40 H 1.09003 * 109.46251 * 54.14170 * 14 13 12 41 41 H 1.08998 * 109.50375 * 299.24202 * 15 14 13 42 42 H 1.08995 * 109.50370 * 179.12178 * 15 14 13 43 43 H 1.09003 * 109.52224 * 62.24678 * 16 15 14 44 44 H 0.96997 * 120.00425 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.50880 * 297.71211 * 25 16 15 46 46 H 1.09001 * 109.50291 * 177.59305 * 25 16 15 47 47 H 1.08993 * 109.46168 * 305.85461 * 26 13 12 48 48 H 1.09001 * 109.46187 * 65.82066 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 7 3.0023 1.3272 1.1243 5 6 2.7339 1.6830 2.4171 6 6 1.4026 2.1326 2.9617 7 6 1.5101 3.2734 3.9873 8 6 0.4086 2.5521 4.7851 9 6 0.8776 1.2531 4.1087 10 7 3.8419 1.5587 3.0912 11 7 4.7870 1.1605 2.3165 12 6 4.3274 1.0024 1.0976 13 7 5.0509 0.5841 -0.0078 14 6 4.7012 -0.7941 -0.3749 15 6 5.4071 -1.1708 -1.6794 16 6 6.9211 -1.0417 -1.4904 17 6 7.6191 -1.3534 -2.7890 18 1 8.2384 -0.6058 -3.2622 19 6 7.4671 -2.5930 -3.3731 20 7 8.0759 -2.8650 -4.5067 21 14 6.3964 -3.8864 -2.5544 22 1 5.0015 -3.7584 -3.0472 23 1 6.9152 -5.2386 -2.8824 24 1 6.4214 -3.6903 -1.0825 25 6 7.2537 0.3901 -1.0615 26 6 6.4942 0.7216 0.2251 27 1 -0.5399 -0.9354 0.0046 28 1 -0.5400 0.9352 -0.0046 29 1 1.8500 -0.9352 0.0046 30 1 2.6142 1.4068 -0.9352 31 1 1.3592 2.1313 0.0985 32 1 0.6657 2.3162 2.1799 33 1 2.4701 3.3086 4.5023 34 1 1.2030 4.2431 3.5956 35 1 -0.6006 2.8517 4.5025 36 1 0.5676 2.5650 5.8633 37 1 0.0606 0.5941 3.8149 38 1 1.6644 0.7349 4.6570 39 1 5.0168 -1.4723 0.4178 40 1 3.6223 -0.8713 -0.5103 41 1 5.0814 -0.5016 -2.4758 42 1 5.1596 -2.1990 -1.9432 43 1 7.2529 -1.7388 -0.7209 44 1 7.9692 -3.7372 -4.9175 45 1 6.9571 1.0839 -1.8481 46 1 8.3256 0.4771 -0.8840 47 1 6.7177 1.7452 0.5253 48 1 6.8015 0.0363 1.0150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570178152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:12 Heat of formation + Delta-G solvation = 128.771385 kcal Electronic energy + Delta-G solvation = -27385.894773 eV Core-core repulsion = 23864.570412 eV Total energy + Delta-G solvation = -3521.324361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.95514 -39.03948 -38.41989 -36.37989 -34.21779 -32.88709 -31.79599 -30.46529 -29.69796 -27.18711 -26.18646 -25.89390 -25.53076 -23.04722 -22.31352 -21.38821 -21.30436 -20.03936 -19.43744 -18.79338 -17.64195 -16.77383 -16.48184 -16.23746 -15.80372 -15.38664 -15.10715 -14.57073 -14.33230 -14.16887 -13.60338 -13.38875 -13.21131 -13.01406 -12.69812 -12.54580 -12.50606 -12.34813 -12.13946 -11.94330 -11.71201 -11.49966 -11.16797 -11.03473 -10.81919 -10.77366 -10.67381 -10.41117 -10.21354 -10.16917 -10.02222 -9.92252 -9.79221 -9.38808 -9.15076 -9.00437 -8.57631 -8.08449 -6.10531 -4.09364 1.58623 1.81431 2.46289 2.91024 3.19763 3.32745 3.34438 3.86594 4.12871 4.30118 4.35766 4.36246 4.39240 4.44435 4.59792 4.63429 4.84300 5.06457 5.11548 5.15664 5.18869 5.37131 5.38906 5.44936 5.50043 5.55362 5.61967 5.66596 5.69703 5.71630 5.78334 5.87232 5.91190 5.99292 6.05502 6.15611 6.20022 6.21650 6.24278 6.35909 6.56537 6.63751 6.67904 6.86220 7.03539 7.21533 7.39834 7.52874 7.72953 8.49571 8.88439 8.94440 9.51891 11.02906 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021524 B = 0.003546 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.544012 B = 7894.254109 C = 8589.571299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.179 4.179 3 C 0.137 3.863 4 N -0.473 5.473 5 C 0.180 3.820 6 C -0.026 4.026 7 C -0.122 4.122 8 C -0.141 4.141 9 C -0.122 4.122 10 N -0.283 5.283 11 N -0.324 5.324 12 C 0.368 3.632 13 N -0.453 5.453 14 C 0.057 3.943 15 C -0.115 4.115 16 C 0.011 3.989 17 C -0.510 4.510 18 H 0.075 0.925 19 C 0.070 3.930 20 N -0.901 5.901 21 Si 0.882 3.118 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.266 1.266 25 C -0.097 4.097 26 C 0.073 3.927 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.026 0.974 44 H 0.263 0.737 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.390 9.726 13.233 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.014 3.986 4 N -0.167 5.167 5 C -0.087 4.087 6 C -0.047 4.047 7 C -0.160 4.160 8 C -0.178 4.178 9 C -0.161 4.161 10 N -0.122 5.122 11 N -0.168 5.168 12 C 0.012 3.988 13 N -0.178 5.178 14 C -0.069 4.069 15 C -0.153 4.153 16 C -0.008 4.008 17 C -0.547 4.547 18 H 0.093 0.907 19 C -0.132 4.132 20 N -0.539 5.539 21 Si 0.713 3.287 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.191 1.191 25 C -0.135 4.135 26 C -0.053 4.053 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.452 9.897 13.813 25.084 hybrid contribution -1.326 -1.417 -0.503 2.005 sum -19.778 8.481 13.309 25.303 Atomic orbital electron populations 1.23915 0.95335 1.02524 0.98216 1.23210 0.96422 0.98280 1.01853 1.20951 0.91679 0.96773 0.89150 1.46213 1.09080 1.51355 1.10040 1.24480 0.98562 1.04898 0.80779 1.20966 0.88665 0.98558 0.96462 1.22984 1.00502 0.96367 0.96188 1.22831 0.98509 0.96306 1.00158 1.22942 1.00807 0.96536 0.95805 1.73855 0.95954 1.16866 1.25517 1.74688 1.23095 1.21417 0.97600 1.22828 0.82548 1.01405 0.92050 1.58732 1.08049 1.23858 1.27152 1.22471 0.99882 0.84946 0.99640 1.22090 0.98968 1.00138 0.94127 1.19224 0.90783 0.92994 0.97750 1.21017 1.29123 0.99688 1.04916 0.90655 1.25020 0.95468 0.98103 0.94595 1.69891 1.43539 1.22582 1.17873 0.86917 0.80364 0.80887 0.80542 1.20600 1.22365 1.19135 1.21579 0.98531 0.98957 0.94462 1.22191 0.82187 1.01652 0.99265 0.87592 0.88101 0.86513 0.86835 0.88610 0.88077 0.88528 0.91173 0.90095 0.90811 0.91199 0.89095 0.94070 0.91618 0.90875 0.92672 0.95576 0.92664 0.91601 0.91293 0.90802 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 14.32 29.01 0.42 -0.74 16 2 C -0.18 -1.70 9.26 -36.02 -0.33 -2.04 16 3 C 0.14 1.39 5.86 -5.19 -0.03 1.36 16 4 N -0.47 -6.45 2.79 -115.37 -0.32 -6.77 16 5 C 0.18 2.43 7.11 -154.01 -1.09 1.33 16 6 C -0.03 -0.24 4.08 -90.96 -0.37 -0.61 16 7 C -0.12 -1.02 7.63 -25.83 -0.20 -1.21 16 8 C -0.14 -0.94 8.09 -25.83 -0.21 -1.15 16 9 C -0.12 -1.03 7.63 -25.92 -0.20 -1.22 16 10 N -0.28 -4.74 11.83 32.99 0.39 -4.35 16 11 N -0.32 -5.98 11.44 30.31 0.35 -5.64 16 12 C 0.37 6.18 6.90 -318.87 -2.20 3.98 16 13 N -0.45 -7.78 4.63 -174.55 -0.81 -8.59 16 14 C 0.06 1.00 5.38 -3.83 -0.02 0.98 16 15 C -0.12 -2.36 4.84 -26.65 -0.13 -2.49 16 16 C 0.01 0.26 1.75 -91.65 -0.16 0.10 16 17 C -0.51 -13.86 9.14 -34.45 -0.31 -14.18 16 18 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 20 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 21 Si 0.88 21.39 24.37 -169.99 -4.14 17.25 16 22 H -0.28 -6.49 6.89 56.52 0.39 -6.10 16 23 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 25 C -0.10 -1.89 5.32 -26.65 -0.14 -2.04 16 26 C 0.07 1.30 4.87 -3.83 -0.02 1.29 16 27 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 28 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 29 H 0.12 1.30 6.39 -52.49 -0.34 0.96 16 30 H 0.11 1.23 8.09 -51.93 -0.42 0.81 16 31 H 0.10 0.72 7.14 -51.93 -0.37 0.35 16 32 H 0.10 0.73 7.32 -51.93 -0.38 0.35 16 33 H 0.10 0.98 7.82 -51.93 -0.41 0.58 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.01 5.13 -51.93 -0.27 0.74 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.06 1.19 3.38 -51.93 -0.18 1.02 16 43 H 0.03 0.62 7.19 -51.93 -0.37 0.25 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.07 1.26 8.10 -51.93 -0.42 0.83 16 48 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -31.79 371.29 -11.07 -42.86 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.81 Total: 0.77 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -5.10 Total: -14.78 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.38 Total: -51.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.79 -11.07 -42.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570178152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.632 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds