Wall clock time and date at job start Tue Mar 31 2020 11:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50708 * 119.99361 * 2 1 4 4 N 1.46494 * 109.47291 * 125.50587 * 3 2 1 5 5 C 1.36742 * 127.13486 * 275.65163 * 4 3 2 6 6 C 1.50699 * 126.34827 * 359.95915 * 5 4 3 7 7 C 1.53779 * 113.61588 * 219.14219 * 6 5 4 8 8 C 1.53954 * 87.01968 * 220.05086 * 7 6 5 9 9 C 1.53778 * 113.61421 * 121.53164 * 6 5 4 10 10 N 1.30293 * 107.30216 * 179.83242 * 5 4 3 11 11 N 1.28531 * 110.05809 * 0.44053 * 10 5 4 12 12 C 1.31221 * 109.85748 * 359.71690 * 11 10 5 13 13 N 1.38574 * 126.47226 * 180.02562 * 12 11 10 14 14 C 1.46851 * 110.99876 * 106.69417 * 13 12 11 15 15 C 1.53031 * 109.52764 * 174.15939 * 14 13 12 16 16 C 1.53122 * 109.27799 * 59.18165 * 15 14 13 17 17 C 1.50693 * 109.52643 * 182.44317 * 16 15 14 18 18 H 1.07998 * 120.00234 * 119.67960 * 17 16 15 19 19 C 1.37872 * 119.99931 * 299.68483 * 17 16 15 20 20 N 1.31516 * 120.00519 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00101 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.46951 * 90.00317 * 21 19 17 23 23 H 1.48496 * 109.47389 * 210.00526 * 21 19 17 24 24 H 1.48505 * 109.46925 * 330.00342 * 21 19 17 25 25 C 1.53121 * 109.15773 * 302.34713 * 16 15 14 26 26 C 1.46845 * 111.00251 * 342.48641 * 13 12 11 27 27 H 1.08001 * 119.99538 * 180.27992 * 1 2 3 28 28 H 1.07991 * 120.00212 * 0.28315 * 1 2 3 29 29 H 1.07991 * 120.00212 * 179.71685 * 2 1 3 30 30 H 1.09006 * 109.46623 * 245.50042 * 3 2 1 31 31 H 1.08994 * 109.47115 * 5.49980 * 3 2 1 32 32 H 1.08996 * 112.84790 * 350.33999 * 6 5 4 33 33 H 1.09001 * 113.61407 * 334.56458 * 7 6 5 34 34 H 1.08996 * 113.61823 * 105.46809 * 7 6 5 35 35 H 1.09003 * 113.53248 * 270.80863 * 8 7 6 36 36 H 1.08998 * 113.74783 * 139.94192 * 8 7 6 37 37 H 1.08995 * 113.61575 * 254.53240 * 9 6 5 38 38 H 1.09006 * 113.61514 * 25.43433 * 9 6 5 39 39 H 1.08994 * 109.46295 * 294.18008 * 14 13 12 40 40 H 1.09003 * 109.46251 * 54.14170 * 14 13 12 41 41 H 1.08998 * 109.50375 * 299.24202 * 15 14 13 42 42 H 1.08995 * 109.50370 * 179.12178 * 15 14 13 43 43 H 1.09003 * 109.52224 * 62.24678 * 16 15 14 44 44 H 0.96997 * 120.00425 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.50880 * 297.71211 * 25 16 15 46 46 H 1.09001 * 109.50291 * 177.59305 * 25 16 15 47 47 H 1.08993 * 109.46168 * 305.85461 * 26 13 12 48 48 H 1.09001 * 109.46187 * 65.82066 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 7 3.0023 1.3272 1.1243 5 6 2.7339 1.6830 2.4171 6 6 1.4026 2.1326 2.9617 7 6 1.5101 3.2734 3.9873 8 6 0.4086 2.5521 4.7851 9 6 0.8776 1.2531 4.1087 10 7 3.8419 1.5587 3.0912 11 7 4.7870 1.1605 2.3165 12 6 4.3274 1.0024 1.0976 13 7 5.0509 0.5841 -0.0078 14 6 4.7012 -0.7941 -0.3749 15 6 5.4071 -1.1708 -1.6794 16 6 6.9211 -1.0417 -1.4904 17 6 7.6191 -1.3534 -2.7890 18 1 8.2384 -0.6058 -3.2622 19 6 7.4671 -2.5930 -3.3731 20 7 8.0759 -2.8650 -4.5067 21 14 6.3964 -3.8864 -2.5544 22 1 5.0015 -3.7584 -3.0472 23 1 6.9152 -5.2386 -2.8824 24 1 6.4214 -3.6903 -1.0825 25 6 7.2537 0.3901 -1.0615 26 6 6.4942 0.7216 0.2251 27 1 -0.5399 -0.9354 0.0046 28 1 -0.5400 0.9352 -0.0046 29 1 1.8500 -0.9352 0.0046 30 1 2.6142 1.4068 -0.9352 31 1 1.3592 2.1313 0.0985 32 1 0.6657 2.3162 2.1799 33 1 2.4701 3.3086 4.5023 34 1 1.2030 4.2431 3.5956 35 1 -0.6006 2.8517 4.5025 36 1 0.5676 2.5650 5.8633 37 1 0.0606 0.5941 3.8149 38 1 1.6644 0.7349 4.6570 39 1 5.0168 -1.4723 0.4178 40 1 3.6223 -0.8713 -0.5103 41 1 5.0814 -0.5016 -2.4758 42 1 5.1596 -2.1990 -1.9432 43 1 7.2529 -1.7388 -0.7209 44 1 7.9692 -3.7372 -4.9175 45 1 6.9571 1.0839 -1.8481 46 1 8.3256 0.4771 -0.8840 47 1 6.7177 1.7452 0.5253 48 1 6.8015 0.0363 1.0150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570178152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:11 Heat of formation + Delta-G solvation = 112.076547 kcal Electronic energy + Delta-G solvation = -27386.618715 eV Core-core repulsion = 23864.570412 eV Total energy + Delta-G solvation = -3522.048303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.09052 -40.26751 -39.36035 -37.24362 -35.93703 -33.89795 -33.61019 -32.00646 -30.92017 -28.30112 -27.48815 -26.61933 -26.51124 -24.56078 -23.94041 -22.50803 -22.29847 -20.95329 -20.56920 -19.97573 -18.87171 -18.66689 -17.62363 -17.33037 -16.72424 -16.54057 -16.13163 -15.83993 -15.63023 -15.36393 -14.99306 -14.89345 -14.55647 -14.18549 -14.01080 -13.78249 -13.46593 -13.39661 -13.22811 -13.16757 -12.87359 -12.69902 -12.49654 -12.28049 -12.19509 -11.82492 -11.78342 -11.72693 -11.52217 -11.38843 -11.30082 -11.21620 -11.04175 -10.96059 -10.67625 -10.58980 -10.50924 -9.38219 -8.29945 -6.33255 0.65275 0.91036 1.25731 1.34220 1.42840 1.53699 1.73568 2.30557 2.63113 3.04580 3.28983 3.59968 3.67175 3.68004 3.71920 3.80792 3.90266 3.94225 3.99158 4.01509 4.19477 4.20338 4.28139 4.34899 4.42392 4.50159 4.55931 4.61869 4.74206 4.79486 4.83895 4.89133 4.90757 4.91928 4.97492 5.02317 5.07088 5.15295 5.15822 5.24380 5.41728 5.49923 5.55016 5.60649 5.62693 5.64653 5.68070 5.75152 6.20471 6.31430 6.73555 7.31783 7.71013 8.86993 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021524 B = 0.003546 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.544012 B = 7894.254109 C = 8589.571299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.210 4.210 3 C 0.133 3.867 4 N -0.467 5.467 5 C 0.199 3.801 6 C -0.029 4.029 7 C -0.125 4.125 8 C -0.125 4.125 9 C -0.123 4.123 10 N -0.322 5.322 11 N -0.358 5.358 12 C 0.351 3.649 13 N -0.450 5.450 14 C 0.067 3.933 15 C -0.109 4.109 16 C 0.010 3.990 17 C -0.513 4.513 18 H 0.037 0.963 19 C 0.014 3.986 20 N -0.949 5.949 21 Si 0.943 3.057 22 H -0.258 1.258 23 H -0.299 1.299 24 H -0.254 1.254 25 C -0.089 4.089 26 C 0.085 3.915 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.017 0.983 44 H 0.265 0.735 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.874 10.517 14.514 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.229 4.229 3 C 0.012 3.988 4 N -0.160 5.160 5 C -0.069 4.069 6 C -0.050 4.050 7 C -0.163 4.163 8 C -0.162 4.162 9 C -0.162 4.162 10 N -0.160 5.160 11 N -0.202 5.202 12 C -0.007 4.007 13 N -0.174 5.174 14 C -0.059 4.059 15 C -0.146 4.146 16 C -0.009 4.009 17 C -0.551 4.551 18 H 0.056 0.944 19 C -0.183 4.183 20 N -0.589 5.589 21 Si 0.770 3.230 22 H -0.184 1.184 23 H -0.227 1.227 24 H -0.178 1.178 25 C -0.127 4.127 26 C -0.041 4.041 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.961 10.710 15.104 29.497 hybrid contribution 0.034 -1.576 -0.895 1.812 sum -22.926 9.135 14.210 28.478 Atomic orbital electron populations 1.24200 0.94346 1.04250 0.94024 1.23002 0.97232 0.96942 1.05698 1.21255 0.91521 0.98573 0.87476 1.46466 1.08321 1.50224 1.10991 1.25338 0.99199 1.02040 0.80342 1.21406 0.87013 0.99079 0.97467 1.22964 1.00076 0.97144 0.96155 1.22816 0.99106 0.94336 0.99990 1.22907 1.00523 0.97390 0.95385 1.73791 0.97020 1.18973 1.26247 1.74572 1.24700 1.22316 0.98595 1.22700 0.83981 1.02549 0.91458 1.58685 1.07508 1.23463 1.27768 1.22321 1.01028 0.85129 0.97443 1.21883 0.97197 0.99764 0.95783 1.19176 0.92153 0.94575 0.94969 1.21293 1.28563 0.98869 1.06344 0.94433 1.25834 0.96948 1.00452 0.95078 1.70040 1.45710 1.23387 1.19798 0.85933 0.79408 0.77530 0.80151 1.18372 1.22723 1.17844 1.21439 0.98943 0.96964 0.95318 1.21978 0.82795 1.01822 0.97550 0.86750 0.85373 0.88738 0.87806 0.85192 0.84841 0.91161 0.89452 0.87437 0.90725 0.89476 0.91782 0.95146 0.89004 0.90956 0.93379 0.96468 0.92566 0.91863 0.91344 0.89952 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 14.32 67.78 0.97 -0.27 16 2 C -0.21 -3.32 9.26 25.64 0.24 -3.08 16 3 C 0.13 2.28 5.86 85.64 0.50 2.79 16 4 N -0.47 -11.84 2.79 -518.91 -1.45 -13.29 16 5 C 0.20 5.01 7.11 137.64 0.98 5.99 16 6 C -0.03 -0.44 4.08 -11.02 -0.04 -0.48 16 7 C -0.12 -1.74 7.63 31.18 0.24 -1.50 16 8 C -0.13 -1.22 8.09 31.18 0.25 -0.97 16 9 C -0.12 -1.71 7.63 31.12 0.24 -1.47 16 10 N -0.32 -10.73 11.83 -49.54 -0.59 -11.32 16 11 N -0.36 -13.28 11.44 -58.00 -0.66 -13.94 16 12 C 0.35 11.54 6.90 260.11 1.79 13.34 16 13 N -0.45 -15.20 4.63 -706.17 -3.27 -18.47 16 14 C 0.07 2.30 5.38 86.32 0.46 2.77 16 15 C -0.11 -4.37 4.84 30.65 0.15 -4.22 16 16 C 0.01 0.47 1.75 -11.46 -0.02 0.45 16 17 C -0.51 -28.82 9.14 25.60 0.23 -28.59 16 18 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 19 C 0.01 0.80 5.45 84.65 0.46 1.26 16 20 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 21 Si 0.94 44.30 24.37 68.60 1.67 45.98 16 22 H -0.26 -11.21 6.89 99.48 0.69 -10.52 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.25 -11.34 6.53 99.48 0.65 -10.69 16 25 C -0.09 -3.51 5.32 30.65 0.16 -3.35 16 26 C 0.09 3.05 4.87 86.33 0.42 3.47 16 27 H 0.11 0.94 8.06 -2.91 -0.02 0.92 16 28 H 0.13 0.55 7.84 -2.92 -0.02 0.52 16 29 H 0.09 1.91 6.39 -2.92 -0.02 1.90 16 30 H 0.10 2.01 8.09 -2.38 -0.02 1.99 16 31 H 0.13 1.30 7.14 -2.39 -0.02 1.29 16 32 H 0.13 1.17 7.32 -2.39 -0.02 1.15 16 33 H 0.07 1.38 7.82 -2.39 -0.02 1.36 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.25 8.09 -2.38 -0.02 1.23 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 2.68 5.13 -2.39 -0.01 2.67 16 41 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.05 2.01 3.38 -2.39 -0.01 2.00 16 43 H 0.02 0.82 7.19 -2.39 -0.02 0.80 16 44 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 45 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.08 2.81 8.10 -2.39 -0.02 2.79 16 48 H 0.04 1.53 8.11 -2.39 -0.02 1.51 16 Total: -1.00 -72.85 371.29 3.90 -68.95 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.86 Total: 14.63 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 7.04 Total: -13.88 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -5.67 Total: -115.67 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.67 Total: 45.98 kcal Total: -72.85 3.90 -68.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570178152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.026 kcal (2) G-P(sol) polarization free energy of solvation -72.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds