Wall clock time and date at job start Tue Mar 31 2020 10:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00379 * 2 1 4 4 H 1.48503 * 109.47229 * 270.00595 * 3 2 1 5 5 H 1.48501 * 109.46765 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47236 * 150.00054 * 3 2 1 7 7 C 1.37882 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00300 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99554 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46789 * 179.97438 * 9 7 2 11 11 C 1.53124 * 109.52375 * 185.00024 * 10 9 7 12 12 C 1.53031 * 109.27859 * 182.44098 * 11 10 9 13 13 N 1.46846 * 109.52479 * 59.17927 * 12 11 10 14 14 C 1.38586 * 111.00098 * 174.15609 * 13 12 11 15 15 N 1.31210 * 126.47019 * 63.37444 * 14 13 12 16 16 N 1.28524 * 109.86236 * 179.97438 * 15 14 13 17 17 C 1.30294 * 110.05299 * 359.97438 * 16 15 14 18 18 C 1.50704 * 126.35101 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.49681 * 60.02478 * 18 17 16 20 20 C 1.52995 * 60.03273 * 252.52683 * 19 18 17 21 21 N 1.36457 * 126.47494 * 243.68283 * 14 13 12 22 22 C 1.46498 * 127.13615 * 0.02562 * 21 14 13 23 23 C 1.53002 * 117.50012 * 14.87724 * 22 21 14 24 24 C 1.53008 * 117.49734 * 306.21879 * 22 21 14 25 25 C 1.46847 * 111.19752 * 298.25709 * 13 12 11 26 26 C 1.53034 * 109.52435 * 61.74205 * 25 13 12 27 27 H 0.96997 * 120.00087 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47215 * 60.00030 * 9 7 2 29 29 H 1.08994 * 109.47304 * 299.99906 * 9 7 2 30 30 H 1.09003 * 109.57917 * 305.15687 * 10 9 7 31 31 H 1.09002 * 109.49852 * 62.49929 * 11 10 9 32 32 H 1.08995 * 109.49941 * 302.38315 * 11 10 9 33 33 H 1.09000 * 109.46755 * 299.16036 * 12 11 10 34 34 H 1.09003 * 109.45972 * 179.19483 * 12 11 10 35 35 H 1.09001 * 115.56287 * 205.71561 * 18 17 16 36 36 H 1.09008 * 117.49994 * 145.01971 * 19 18 17 37 37 H 1.08998 * 117.49910 * 0.02861 * 19 18 17 38 38 H 1.08994 * 117.50127 * 107.48422 * 20 19 18 39 39 H 1.09004 * 117.49557 * 252.47895 * 20 19 18 40 40 H 1.09003 * 115.55108 * 160.55658 * 22 21 14 41 41 H 1.08993 * 117.49875 * 0.02562 * 23 22 21 42 42 H 1.09001 * 117.49485 * 145.02078 * 23 22 21 43 43 H 1.08998 * 117.49772 * 214.98222 * 24 22 21 44 44 H 1.09005 * 117.49697 * 359.97438 * 24 22 21 45 45 H 1.09005 * 109.46104 * 181.75630 * 25 13 12 46 46 H 1.08992 * 109.46317 * 301.72459 * 25 13 12 47 47 H 1.09000 * 109.50469 * 180.87649 * 26 25 13 48 48 H 1.08998 * 109.50216 * 60.76038 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4850 -4.9852 -0.1297 12 6 2.4791 -6.1470 -0.0689 13 7 3.2096 -6.1018 1.2042 14 6 4.0247 -7.2132 1.3489 15 7 5.0439 -7.5372 0.5888 16 7 5.5734 -8.6297 1.0107 17 6 4.9291 -9.0636 2.0567 18 6 5.2384 -10.3121 2.8420 19 6 6.6197 -10.4137 3.4921 20 6 6.2873 -11.2671 2.2666 21 7 3.9152 -8.1804 2.3052 22 6 2.9205 -8.2547 3.3782 23 6 1.6870 -7.3571 3.2615 24 6 2.7734 -7.0354 4.2908 25 6 3.9850 -4.8608 1.3276 26 6 3.0358 -3.6606 1.3086 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5563 -0.8920 29 1 0.6240 -2.5575 0.8879 30 1 2.9320 -3.5547 -0.8423 31 1 0.9540 -5.0099 -1.0814 32 1 0.7706 -5.0743 0.6886 33 1 3.1848 -6.0649 -0.8956 34 1 1.9395 -7.0911 -0.1447 35 1 4.3968 -10.7518 3.3772 36 1 6.6869 -10.9201 4.4550 37 1 7.3045 -9.5773 3.3521 38 1 6.7530 -10.9920 1.3203 39 1 6.1359 -12.3352 2.4232 40 1 2.7862 -9.2387 3.8275 41 1 1.6154 -6.7115 2.3862 42 1 0.7413 -7.7504 3.6342 43 1 2.5419 -7.2173 5.3403 44 1 3.4170 -6.1782 4.0931 45 1 4.5392 -4.8707 2.2663 46 1 4.6835 -4.7847 0.4945 47 1 3.6129 -2.7390 1.3846 48 1 2.3458 -3.7290 2.1496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573214496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:01 Heat of formation + Delta-G solvation = 118.933425 kcal Electronic energy + Delta-G solvation = -27082.113944 eV Core-core repulsion = 23560.362977 eV Total energy + Delta-G solvation = -3521.750967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.16166 -40.29740 -38.47897 -38.08283 -36.21717 -34.28409 -33.73496 -31.96807 -31.00492 -29.15503 -26.16168 -25.20653 -24.78185 -24.20027 -23.35061 -23.24516 -22.92280 -21.43055 -21.21695 -20.32547 -18.51499 -18.37462 -17.79642 -17.21500 -16.63681 -16.54128 -15.87614 -15.79655 -15.40338 -15.39293 -15.18712 -14.72949 -14.32387 -14.09143 -13.81463 -13.42961 -13.25119 -13.09769 -12.91664 -12.80951 -12.66853 -12.54725 -12.41489 -12.36207 -12.26777 -12.15334 -12.05123 -11.80858 -11.73564 -11.47148 -11.38606 -11.28484 -10.98456 -10.80438 -10.55220 -10.50535 -9.95516 -9.81734 -8.15883 -6.24230 0.52108 1.09220 1.40517 1.40958 1.51535 1.60507 2.42737 2.51326 2.76570 2.93741 3.15555 3.17816 3.53288 3.66796 3.74865 3.83180 3.90078 3.92666 3.96231 3.99084 4.10006 4.19717 4.22899 4.37638 4.39638 4.48213 4.64870 4.69841 4.73211 4.79580 4.80072 4.85038 4.91187 4.93662 4.95029 5.07204 5.15503 5.16610 5.29114 5.30748 5.32853 5.39265 5.42486 5.56404 5.58309 5.66542 5.83460 5.91963 6.19559 6.32086 6.91749 7.43854 7.59273 8.95722 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.002879 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.676035 B = 9721.831109 C = 9962.592966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.076 4.076 11 C -0.099 4.099 12 C 0.077 3.923 13 N -0.447 5.447 14 C 0.343 3.657 15 N -0.349 5.349 16 N -0.326 5.326 17 C 0.218 3.782 18 C -0.095 4.095 19 C -0.147 4.147 20 C -0.146 4.146 21 N -0.432 5.432 22 C 0.043 3.957 23 C -0.174 4.174 24 C -0.162 4.162 25 C 0.080 3.920 26 C -0.086 4.086 27 H 0.261 0.739 28 H -0.011 1.011 29 H -0.003 1.003 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.177 0.823 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.615 -24.156 12.042 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.094 4.094 11 C -0.137 4.137 12 C -0.049 4.049 13 N -0.174 5.174 14 C -0.014 4.014 15 N -0.192 5.192 16 N -0.166 5.166 17 C -0.049 4.049 18 C -0.116 4.116 19 C -0.185 4.185 20 C -0.184 4.184 21 N -0.122 5.122 22 C -0.060 4.060 23 C -0.212 4.212 24 C -0.200 4.200 25 C -0.047 4.047 26 C -0.124 4.124 27 H 0.070 0.930 28 H 0.007 0.993 29 H 0.015 0.985 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.194 0.806 41 H 0.131 0.869 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.054 0.946 47 H 0.083 0.917 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.128 -23.954 11.294 27.426 hybrid contribution -0.185 1.554 -0.154 1.573 sum 6.944 -22.400 11.140 25.963 Atomic orbital electron populations 1.70080 1.07583 1.27462 1.52214 1.25864 0.95642 1.02885 0.95213 0.85604 0.78839 0.79308 0.78255 1.20253 1.20886 1.18872 1.21650 0.93321 0.92232 1.49488 0.92402 1.18962 0.93805 0.92372 0.94823 1.21106 0.97031 0.94487 0.96799 1.21603 0.97140 0.92400 1.02586 1.22096 0.95668 0.99865 0.87308 1.59024 1.24259 0.98074 1.36007 1.22481 0.95655 0.92748 0.90477 1.74552 1.09559 1.10132 1.25001 1.73881 1.25042 1.06711 1.10982 1.24468 0.88049 0.95577 0.96813 1.20418 0.96608 0.91102 1.03461 1.23123 0.94077 1.02387 0.98920 1.23100 0.99213 0.97943 0.98163 1.45902 1.24512 1.18223 1.23573 1.22463 0.92443 0.99785 0.91319 1.23817 0.93109 1.01290 1.02967 1.23391 1.01951 0.96685 0.98003 1.22083 0.94660 0.87144 1.00856 1.21408 0.97579 0.95412 0.98011 0.92975 0.99299 0.98463 0.93592 0.90872 0.90856 0.94463 0.89943 0.82756 0.84670 0.90371 0.89633 0.84870 0.80632 0.86863 0.85280 0.84671 0.90421 0.90826 0.94598 0.91674 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.53 -29.40 8.45 25.60 0.22 -29.19 16 8 H 0.06 3.12 7.08 -2.91 -0.02 3.10 16 9 C 0.04 1.91 4.45 29.85 0.13 2.04 16 10 C -0.08 -3.01 2.20 -10.71 -0.02 -3.04 16 11 C -0.10 -3.24 5.38 30.65 0.16 -3.08 16 12 C 0.08 2.32 5.09 86.32 0.44 2.76 16 13 N -0.45 -13.16 2.11 -706.17 -1.49 -14.65 16 14 C 0.34 10.47 6.18 260.11 1.61 12.08 16 15 N -0.35 -12.47 12.19 -58.00 -0.71 -13.17 16 16 N -0.33 -10.62 11.79 -49.54 -0.58 -11.20 16 17 C 0.22 5.39 7.59 137.64 1.04 6.43 16 18 C -0.10 -1.37 6.02 -11.51 -0.07 -1.44 16 19 C -0.15 -1.75 10.23 30.59 0.31 -1.44 16 20 C -0.15 -1.86 10.15 30.62 0.31 -1.55 16 21 N -0.43 -10.49 3.15 -492.44 -1.55 -12.05 16 22 C 0.04 0.69 6.72 45.00 0.30 0.99 16 23 C -0.17 -2.99 9.85 30.62 0.30 -2.69 16 24 C -0.16 -2.61 10.34 30.62 0.32 -2.29 16 25 C 0.08 2.55 5.37 86.32 0.46 3.01 16 26 C -0.09 -3.11 5.15 30.65 0.16 -2.96 16 27 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 28 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 35 H 0.15 1.19 7.62 -2.39 -0.02 1.17 16 36 H 0.14 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.55 7.92 -2.39 -0.02 1.53 16 39 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.18 1.50 7.58 -2.39 -0.02 1.48 16 41 H 0.11 2.65 5.37 -2.39 -0.01 2.63 16 42 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.07 2.24 8.10 -2.38 -0.02 2.22 16 46 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.06 2.55 7.05 -2.39 -0.02 2.53 16 48 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -71.71 383.15 5.05 -66.66 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.93 Total: 13.82 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 6.14 Total: -19.82 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.05 Total: -107.04 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.71 5.05 -66.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573214496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.596 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds