Wall clock time and date at job start Tue Mar 31 2020 12:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47157 * 110.99869 * 2 1 4 4 C 1.52956 * 108.62484 * 52.48882 * 3 2 1 5 5 C 1.50541 * 109.86404 * 50.31246 * 4 3 2 6 6 N 1.32905 * 119.22041 * 163.13908 * 5 4 3 7 7 C 1.31673 * 121.08106 * 179.75904 * 6 5 4 8 8 N 1.31782 * 121.81181 * 359.97310 * 7 6 5 9 9 C 1.32913 * 120.59008 * 0.07641 * 8 7 6 10 10 N 1.38535 * 120.52229 * 179.74796 * 9 8 7 11 11 C 1.46854 * 111.00021 * 272.44333 * 10 9 8 12 12 C 1.53032 * 109.52666 * 185.83724 * 11 10 9 13 13 C 1.53117 * 109.28061 * 300.82330 * 12 11 10 14 14 C 1.53002 * 109.52196 * 177.55599 * 13 12 11 15 15 C 1.50702 * 109.46812 * 65.31605 * 14 13 12 16 16 H 1.08007 * 120.00200 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00063 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00201 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99389 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47194 * 90.00378 * 19 17 15 21 21 H 1.48504 * 109.46719 * 209.99485 * 19 17 15 22 22 H 1.48492 * 109.47582 * 329.99678 * 19 17 15 23 23 C 1.53120 * 109.16122 * 57.65348 * 13 12 11 24 24 C 1.46849 * 111.00715 * 36.65376 * 10 9 8 25 25 C 1.37448 * 121.67539 * 343.00662 * 5 4 3 26 26 C 1.46726 * 111.00207 * 123.08377 * 2 1 3 27 27 H 1.08995 * 109.47534 * 56.04084 * 1 2 3 28 28 H 1.09001 * 109.46863 * 176.05013 * 1 2 3 29 29 H 1.09000 * 109.46872 * 296.04540 * 1 2 3 30 30 H 1.09001 * 109.60936 * 292.74282 * 3 2 1 31 31 H 1.09003 * 109.60672 * 172.22931 * 3 2 1 32 32 H 1.09004 * 109.40515 * 290.18871 * 4 3 2 33 33 H 1.09006 * 109.34037 * 170.39739 * 4 3 2 34 34 H 1.08004 * 119.09212 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.45864 * 305.86123 * 11 10 9 36 36 H 1.08999 * 109.45741 * 65.82034 * 11 10 9 37 37 H 1.09004 * 109.50180 * 180.87629 * 12 11 10 38 38 H 1.09003 * 109.50066 * 60.76500 * 12 11 10 39 39 H 1.08997 * 109.51994 * 297.74889 * 13 12 11 40 40 H 1.08990 * 109.47084 * 185.31114 * 14 13 12 41 41 H 1.08997 * 109.47302 * 305.31900 * 14 13 12 42 42 H 0.97001 * 120.00082 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.50269 * 182.40244 * 23 13 12 44 44 H 1.09003 * 109.50354 * 62.28671 * 23 13 12 45 45 H 1.09009 * 109.45688 * 294.18370 * 24 10 9 46 46 H 1.09002 * 109.46022 * 54.14452 * 24 10 9 47 47 H 1.08996 * 109.31940 * 48.99391 * 26 2 1 48 48 H 1.09008 * 109.32004 * 168.61636 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9963 1.3738 0.0000 4 6 1.3474 2.1462 1.1498 5 6 1.4660 1.3579 2.4268 6 7 1.2789 1.9740 3.5894 7 6 1.3692 1.3191 4.7281 8 7 1.6468 0.0315 4.7688 9 6 1.8479 -0.6528 3.6472 10 7 2.1448 -2.0053 3.6919 11 6 3.5909 -2.2225 3.8266 12 6 3.8949 -3.7189 3.7265 13 6 3.1428 -4.4628 4.8335 14 6 3.3943 -5.9662 4.7013 15 6 4.8513 -6.2560 4.9550 16 1 5.5299 -5.4486 5.1878 17 6 5.3178 -7.5519 4.8911 18 7 6.5892 -7.8048 5.1131 19 14 4.1439 -8.9483 4.4893 20 1 4.1037 -9.1536 3.0192 21 1 4.6111 -10.1934 5.1503 22 1 2.7839 -8.6082 4.9790 23 6 1.6437 -4.1811 4.6995 24 6 1.4050 -2.6713 4.7715 25 6 1.7606 0.0153 2.4215 26 6 1.9949 -0.7477 1.1477 27 1 -0.3634 0.5740 -0.8523 28 1 -0.3633 -1.0252 -0.0708 29 1 -0.3633 0.4512 0.9233 30 1 1.7568 1.8576 -0.9470 31 1 3.0772 1.3507 0.1388 32 1 0.2942 2.3141 0.9243 33 1 1.8498 3.1062 1.2687 34 1 1.2114 1.8518 5.6542 35 1 4.1135 -1.6915 3.0310 36 1 3.9258 -1.8478 4.7939 37 1 4.9666 -3.8811 3.8421 38 1 3.5728 -4.0914 2.7540 39 1 3.4927 -4.1182 5.8066 40 1 2.7853 -6.5019 5.4293 41 1 3.1289 -6.2920 3.6956 42 1 6.9174 -8.7165 5.0677 43 1 1.1070 -4.6736 5.5104 44 1 1.2862 -4.5609 3.7424 45 1 1.7502 -2.2944 5.7344 46 1 0.3400 -2.4663 4.6621 47 1 1.4940 -1.7139 1.2087 48 1 3.0656 -0.9043 1.0161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573718146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:20 Heat of formation + Delta-G solvation = 54.675675 kcal Electronic energy + Delta-G solvation = -27267.983583 eV Core-core repulsion = 23743.446192 eV Total energy + Delta-G solvation = -3524.537392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83387 -39.17199 -38.39157 -35.38886 -33.35329 -32.51271 -31.56840 -31.01568 -30.55760 -28.43382 -27.61135 -25.24773 -24.42507 -23.86957 -22.83714 -22.28831 -20.81885 -20.10610 -19.17173 -17.98192 -17.40758 -16.67209 -16.25028 -15.74099 -15.21145 -15.15789 -14.80585 -14.62615 -14.34934 -14.15677 -13.79010 -13.63487 -13.57899 -13.10228 -12.89114 -12.74518 -12.47011 -12.18249 -12.08723 -11.98790 -11.81356 -11.56920 -11.53505 -11.30061 -11.10281 -10.84337 -10.67344 -10.44951 -10.23305 -9.82594 -9.67108 -9.52249 -9.39791 -9.28163 -9.03375 -8.76704 -8.54349 -8.51825 -6.03204 -4.00507 0.72805 0.82299 3.31537 3.37176 3.39311 3.42830 3.51274 3.57180 3.87945 4.06221 4.42032 4.46396 4.55246 4.69017 4.72474 4.85323 5.06295 5.12177 5.19009 5.21562 5.24921 5.29812 5.31391 5.41248 5.44557 5.47749 5.54738 5.57790 5.66570 5.70454 5.74045 5.87985 5.99307 6.03096 6.07280 6.28134 6.28305 6.48745 6.63485 6.66855 6.68994 6.82712 6.87583 6.93318 7.05376 7.13393 7.29064 7.45979 7.81272 7.93803 8.54977 9.01571 9.59945 11.10131 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.003141 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.271500 B = 8912.792272 C = 9432.696706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.529 5.529 3 C 0.050 3.950 4 C -0.107 4.107 5 C 0.178 3.822 6 N -0.533 5.533 7 C 0.305 3.695 8 N -0.551 5.551 9 C 0.362 3.638 10 N -0.482 5.482 11 C 0.065 3.935 12 C -0.100 4.100 13 C -0.074 4.074 14 C -0.008 4.008 15 C -0.516 4.516 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.115 4.115 24 C 0.066 3.934 25 C -0.202 4.202 26 C 0.108 3.892 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.262 0.738 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.104 0.896 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.796 19.840 -8.602 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.250 5.250 3 C -0.079 4.079 4 C -0.146 4.146 5 C 0.034 3.966 6 N -0.248 5.248 7 C 0.016 3.984 8 N -0.269 5.269 9 C 0.122 3.878 10 N -0.204 5.204 11 C -0.060 4.060 12 C -0.138 4.138 13 C -0.093 4.093 14 C -0.045 4.045 15 C -0.554 4.554 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.544 5.544 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.153 4.153 24 C -0.061 4.061 25 C -0.210 4.210 26 C -0.021 4.021 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.210 0.790 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.122 0.878 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.784 19.684 -8.641 25.011 hybrid contribution -0.501 -0.452 0.847 1.083 sum -13.285 19.232 -7.794 24.640 Atomic orbital electron populations 1.22457 0.87349 1.02740 1.00452 1.62670 1.08407 1.13533 1.40360 1.22337 1.00137 0.88087 0.97302 1.21070 1.03449 0.99507 0.90622 1.21062 0.91059 0.90226 0.94219 1.68338 1.17251 1.40639 0.98582 1.24692 0.90643 0.87045 0.96049 1.68597 1.16074 1.10060 1.32170 1.20248 0.89408 0.90184 0.87943 1.59786 1.09900 1.03729 1.46955 1.22294 0.83282 0.99935 1.00498 1.21604 1.02033 0.90233 0.99891 1.21080 0.92010 0.98184 0.97984 1.19598 0.97674 0.90994 0.96246 1.21145 0.92589 0.94078 1.47541 0.90962 1.25031 0.94879 0.98806 0.94814 1.69913 1.13785 1.20334 1.50374 0.86802 0.81998 0.81872 0.78746 1.20332 1.21557 1.19058 1.21772 0.98524 0.92839 1.02163 1.22081 0.96828 0.95095 0.92059 1.21560 1.05512 0.95686 0.98226 1.20932 1.01926 0.96649 0.82585 0.91156 0.90954 0.95421 0.89145 0.90005 0.89044 0.88675 0.79042 0.91143 0.93754 0.89611 0.91424 0.92082 0.96679 0.96910 0.92822 0.91526 0.91501 0.92798 0.91713 0.87779 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 8.72 60.06 0.52 0.67 16 2 N -0.53 -4.87 5.28 -244.56 -1.29 -6.16 16 3 C 0.05 0.37 6.05 -3.71 -0.02 0.35 16 4 C -0.11 -0.87 5.43 -27.98 -0.15 -1.02 16 5 C 0.18 2.02 5.96 -82.49 -0.49 1.53 16 6 N -0.53 -6.52 10.34 -11.03 -0.11 -6.63 16 7 C 0.31 3.68 12.28 -92.27 -1.13 2.55 16 8 N -0.55 -7.64 9.41 -13.78 -0.13 -7.77 16 9 C 0.36 4.94 5.57 -154.75 -0.86 4.08 16 10 N -0.48 -6.75 3.81 -172.99 -0.66 -7.41 16 11 C 0.07 0.96 5.40 -3.83 -0.02 0.94 16 12 C -0.10 -1.72 5.15 -26.65 -0.14 -1.86 16 13 C -0.07 -1.39 2.20 -90.50 -0.20 -1.59 16 14 C -0.01 -0.18 3.52 -27.88 -0.10 -0.28 16 15 C -0.52 -14.16 9.00 -34.44 -0.31 -14.47 16 16 H 0.07 2.13 7.33 -52.48 -0.38 1.74 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 19 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 C -0.12 -1.81 5.38 -26.65 -0.14 -1.95 16 24 C 0.07 0.95 4.94 -3.84 -0.02 0.93 16 25 C -0.20 -2.42 5.29 -104.48 -0.55 -2.97 16 26 C 0.11 1.16 5.19 -5.26 -0.03 1.13 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.03 0.25 5.71 -51.93 -0.30 -0.04 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 32 H 0.09 0.69 6.95 -51.93 -0.36 0.33 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.19 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.65 7.05 -51.93 -0.37 1.28 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 41 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.83 7.83 -51.92 -0.41 0.42 16 46 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 47 H 0.10 1.21 7.76 -51.93 -0.40 0.80 16 48 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -30.86 365.98 -12.38 -43.23 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.06 Total: -0.66 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.74 Total: -10.18 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -1.42 Total: -54.78 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.86 -12.38 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573718146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.910 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds