Wall clock time and date at job start Tue Mar 31 2020 12:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47157 * 110.99869 * 2 1 4 4 C 1.52956 * 108.62484 * 52.48882 * 3 2 1 5 5 C 1.50541 * 109.86404 * 50.31246 * 4 3 2 6 6 N 1.32905 * 119.22041 * 163.13908 * 5 4 3 7 7 C 1.31673 * 121.08106 * 179.75904 * 6 5 4 8 8 N 1.31782 * 121.81181 * 359.97310 * 7 6 5 9 9 C 1.32913 * 120.59008 * 0.07641 * 8 7 6 10 10 N 1.38535 * 120.52229 * 179.74796 * 9 8 7 11 11 C 1.46854 * 111.00021 * 272.44333 * 10 9 8 12 12 C 1.53032 * 109.52666 * 185.83724 * 11 10 9 13 13 C 1.53117 * 109.28061 * 300.82330 * 12 11 10 14 14 C 1.53002 * 109.52196 * 177.55599 * 13 12 11 15 15 C 1.50702 * 109.46812 * 65.31605 * 14 13 12 16 16 H 1.08007 * 120.00200 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00063 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00201 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99389 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47194 * 90.00378 * 19 17 15 21 21 H 1.48504 * 109.46719 * 209.99485 * 19 17 15 22 22 H 1.48492 * 109.47582 * 329.99678 * 19 17 15 23 23 C 1.53120 * 109.16122 * 57.65348 * 13 12 11 24 24 C 1.46849 * 111.00715 * 36.65376 * 10 9 8 25 25 C 1.37448 * 121.67539 * 343.00662 * 5 4 3 26 26 C 1.46726 * 111.00207 * 123.08377 * 2 1 3 27 27 H 1.08995 * 109.47534 * 56.04084 * 1 2 3 28 28 H 1.09001 * 109.46863 * 176.05013 * 1 2 3 29 29 H 1.09000 * 109.46872 * 296.04540 * 1 2 3 30 30 H 1.09001 * 109.60936 * 292.74282 * 3 2 1 31 31 H 1.09003 * 109.60672 * 172.22931 * 3 2 1 32 32 H 1.09004 * 109.40515 * 290.18871 * 4 3 2 33 33 H 1.09006 * 109.34037 * 170.39739 * 4 3 2 34 34 H 1.08004 * 119.09212 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.45864 * 305.86123 * 11 10 9 36 36 H 1.08999 * 109.45741 * 65.82034 * 11 10 9 37 37 H 1.09004 * 109.50180 * 180.87629 * 12 11 10 38 38 H 1.09003 * 109.50066 * 60.76500 * 12 11 10 39 39 H 1.08997 * 109.51994 * 297.74889 * 13 12 11 40 40 H 1.08990 * 109.47084 * 185.31114 * 14 13 12 41 41 H 1.08997 * 109.47302 * 305.31900 * 14 13 12 42 42 H 0.97001 * 120.00082 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.50269 * 182.40244 * 23 13 12 44 44 H 1.09003 * 109.50354 * 62.28671 * 23 13 12 45 45 H 1.09009 * 109.45688 * 294.18370 * 24 10 9 46 46 H 1.09002 * 109.46022 * 54.14452 * 24 10 9 47 47 H 1.08996 * 109.31940 * 48.99391 * 26 2 1 48 48 H 1.09008 * 109.32004 * 168.61636 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9963 1.3738 0.0000 4 6 1.3474 2.1462 1.1498 5 6 1.4660 1.3579 2.4268 6 7 1.2789 1.9740 3.5894 7 6 1.3692 1.3191 4.7281 8 7 1.6468 0.0315 4.7688 9 6 1.8479 -0.6528 3.6472 10 7 2.1448 -2.0053 3.6919 11 6 3.5909 -2.2225 3.8266 12 6 3.8949 -3.7189 3.7265 13 6 3.1428 -4.4628 4.8335 14 6 3.3943 -5.9662 4.7013 15 6 4.8513 -6.2560 4.9550 16 1 5.5299 -5.4486 5.1878 17 6 5.3178 -7.5519 4.8911 18 7 6.5892 -7.8048 5.1131 19 14 4.1439 -8.9483 4.4893 20 1 4.1037 -9.1536 3.0192 21 1 4.6111 -10.1934 5.1503 22 1 2.7839 -8.6082 4.9790 23 6 1.6437 -4.1811 4.6995 24 6 1.4050 -2.6713 4.7715 25 6 1.7606 0.0153 2.4215 26 6 1.9949 -0.7477 1.1477 27 1 -0.3634 0.5740 -0.8523 28 1 -0.3633 -1.0252 -0.0708 29 1 -0.3633 0.4512 0.9233 30 1 1.7568 1.8576 -0.9470 31 1 3.0772 1.3507 0.1388 32 1 0.2942 2.3141 0.9243 33 1 1.8498 3.1062 1.2687 34 1 1.2114 1.8518 5.6542 35 1 4.1135 -1.6915 3.0310 36 1 3.9258 -1.8478 4.7939 37 1 4.9666 -3.8811 3.8421 38 1 3.5728 -4.0914 2.7540 39 1 3.4927 -4.1182 5.8066 40 1 2.7853 -6.5019 5.4293 41 1 3.1289 -6.2920 3.6956 42 1 6.9174 -8.7165 5.0677 43 1 1.1070 -4.6736 5.5104 44 1 1.2862 -4.5609 3.7424 45 1 1.7502 -2.2944 5.7344 46 1 0.3400 -2.4663 4.6621 47 1 1.4940 -1.7139 1.2087 48 1 3.0656 -0.9043 1.0161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573718146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:19 Heat of formation + Delta-G solvation = 35.952889 kcal Electronic energy + Delta-G solvation = -27268.795464 eV Core-core repulsion = 23743.446192 eV Total energy + Delta-G solvation = -3525.349273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75500 -40.28667 -39.25359 -36.75427 -34.78666 -33.94182 -32.75222 -31.97838 -31.69429 -30.05157 -28.38007 -26.41500 -25.46841 -24.92798 -24.10855 -23.43732 -22.25284 -20.99863 -20.55720 -19.08785 -18.70772 -18.35987 -16.98279 -16.69351 -16.36591 -16.13724 -15.99020 -15.66217 -15.56422 -15.31239 -15.20223 -14.83588 -14.60595 -14.46609 -14.32275 -13.78216 -13.59685 -13.44033 -13.21006 -13.08340 -12.91120 -12.73961 -12.48716 -12.42957 -12.29975 -12.13504 -12.12384 -11.95789 -11.68719 -11.42217 -11.27471 -11.03047 -10.89711 -10.70990 -10.39631 -10.33840 -9.73530 -9.38195 -8.24285 -6.26455 -0.21630 -0.10759 1.38289 1.39831 1.51388 2.32131 2.39710 2.59110 2.82521 3.11471 3.14200 3.16444 3.54865 3.72078 3.81565 3.91267 3.96544 4.01229 4.07427 4.17077 4.25554 4.38488 4.39261 4.43626 4.46596 4.53307 4.63786 4.67200 4.74670 4.78507 4.79931 4.87659 4.92918 4.95987 5.04259 5.06300 5.08445 5.20751 5.21742 5.28354 5.37672 5.47723 5.63810 5.72637 5.75559 5.89448 5.98585 6.03285 6.06690 6.35307 6.81023 7.00364 7.37439 8.92338 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.003141 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.271500 B = 8912.792272 C = 9432.696706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.534 5.534 3 C 0.052 3.948 4 C -0.102 4.102 5 C 0.175 3.825 6 N -0.540 5.540 7 C 0.299 3.701 8 N -0.571 5.571 9 C 0.343 3.657 10 N -0.477 5.477 11 C 0.079 3.921 12 C -0.092 4.092 13 C -0.071 4.071 14 C -0.004 4.004 15 C -0.518 4.518 16 H 0.034 0.966 17 C 0.002 3.998 18 N -0.954 5.954 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.247 1.247 23 C -0.105 4.105 24 C 0.075 3.925 25 C -0.202 4.202 26 C 0.114 3.886 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.017 0.983 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.218 0.782 35 H 0.085 0.915 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.016 0.984 41 H 0.020 0.980 42 H 0.264 0.736 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.283 20.968 -10.258 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.255 5.255 3 C -0.077 4.077 4 C -0.141 4.141 5 C 0.031 3.969 6 N -0.255 5.255 7 C 0.010 3.990 8 N -0.290 5.290 9 C 0.104 3.896 10 N -0.199 5.199 11 C -0.047 4.047 12 C -0.130 4.130 13 C -0.090 4.090 14 C -0.041 4.041 15 C -0.556 4.556 16 H 0.053 0.947 17 C -0.194 4.194 18 N -0.596 5.596 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.215 1.215 22 H -0.170 1.170 23 C -0.142 4.142 24 C -0.052 4.052 25 C -0.210 4.210 26 C -0.016 4.016 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.235 0.765 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.112 0.888 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.292 20.839 -10.302 27.825 hybrid contribution 0.327 -0.673 1.377 1.567 sum -14.965 20.166 -8.925 26.651 Atomic orbital electron populations 1.22473 0.86683 1.02809 1.00791 1.62698 1.09022 1.14516 1.39237 1.22437 0.99953 0.87127 0.98145 1.21161 1.04315 0.99512 0.89132 1.21618 0.89799 0.90296 0.95191 1.68432 1.17370 1.40745 0.98941 1.25230 0.90006 0.86637 0.97129 1.68576 1.16886 1.10994 1.32542 1.20329 0.90617 0.89919 0.88724 1.59748 1.08950 1.04567 1.46605 1.22056 0.84424 0.97938 1.00305 1.21435 1.00019 0.92061 0.99496 1.20979 0.94754 0.95648 0.97613 1.19548 0.94379 0.93860 0.96360 1.21469 0.94577 0.93143 1.46425 0.94732 1.25983 0.96579 1.01919 0.94924 1.70072 1.16084 1.21059 1.52345 0.85709 0.80282 0.77967 0.78996 1.19190 1.21504 1.17024 1.21653 0.95706 0.93952 1.02932 1.21954 0.97472 0.94059 0.91723 1.21710 1.05156 0.96081 0.98060 1.20840 1.01691 0.96355 0.82686 0.89140 0.91389 0.96390 0.86711 0.90169 0.87953 0.87544 0.76535 0.89710 0.95150 0.92522 0.90956 0.93857 0.96564 0.96141 0.92754 0.90614 0.90730 0.93948 0.90529 0.88779 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.72 127.69 1.11 1.40 16 2 N -0.53 -8.60 5.28 -927.65 -4.89 -13.49 16 3 C 0.05 0.62 6.05 86.24 0.52 1.14 16 4 C -0.10 -1.37 5.43 29.78 0.16 -1.21 16 5 C 0.18 3.63 5.96 42.16 0.25 3.88 16 6 N -0.54 -12.24 10.34 -188.82 -1.95 -14.19 16 7 C 0.30 6.80 12.28 180.92 2.22 9.02 16 8 N -0.57 -15.34 9.41 -197.53 -1.86 -17.20 16 9 C 0.34 9.04 5.57 133.25 0.74 9.78 16 10 N -0.48 -13.01 3.81 -701.23 -2.67 -15.68 16 11 C 0.08 2.32 5.40 86.32 0.47 2.79 16 12 C -0.09 -3.24 5.15 30.64 0.16 -3.08 16 13 C -0.07 -2.69 2.20 -10.71 -0.02 -2.71 16 14 C 0.00 -0.19 3.52 29.85 0.11 -0.08 16 15 C -0.52 -29.29 9.00 25.60 0.23 -29.06 16 16 H 0.03 2.15 7.33 -2.91 -0.02 2.13 16 17 C 0.00 0.12 5.47 84.66 0.46 0.58 16 18 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 19 Si 0.95 44.21 27.47 68.60 1.88 46.10 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 23 C -0.10 -3.14 5.38 30.64 0.16 -2.98 16 24 C 0.07 2.08 4.94 86.32 0.43 2.51 16 25 C -0.20 -4.56 5.29 -19.77 -0.10 -4.67 16 26 C 0.11 2.27 5.19 85.47 0.44 2.72 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 29 H 0.02 0.29 5.71 -2.39 -0.01 0.27 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.01 8.05 -2.39 -0.02 0.99 16 32 H 0.10 1.21 6.95 -2.38 -0.02 1.19 16 33 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.22 3.48 8.06 -2.91 -0.02 3.45 16 35 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 2.30 7.05 -2.38 -0.02 2.28 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 41 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.04 1.28 7.83 -2.38 -0.02 1.27 16 46 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 47 H 0.09 2.07 7.76 -2.39 -0.02 2.05 16 48 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -67.73 365.98 -0.97 -68.70 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.88 Total: 15.40 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 7.34 Total: -9.98 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -11.08 Total: -120.22 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.10 kcal Total: -67.73 -0.97 -68.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573718146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.657 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds