Wall clock time and date at job start Tue Mar 31 2020 10:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81399 * 102.99839 * 2 1 4 4 H 1.09002 * 109.47098 * 54.99897 * 3 2 1 5 5 C 1.52997 * 109.47065 * 294.99909 * 3 2 1 6 6 C 1.53002 * 109.46817 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47233 * 60.00194 * 6 5 3 8 8 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 9 9 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 10 10 N 1.46894 * 109.47515 * 180.02562 * 8 7 6 11 11 C 1.46908 * 110.99837 * 84.99962 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47282 * 60.00347 * 12 11 10 14 14 O 1.42897 * 109.47270 * 300.00002 * 12 11 10 15 15 C 1.53006 * 109.47087 * 180.02562 * 12 11 10 16 16 N 1.46891 * 109.47364 * 184.99856 * 15 12 11 17 17 C 1.46907 * 110.99932 * 66.04558 * 16 15 12 18 18 C 1.46895 * 111.00197 * 189.99900 * 16 15 12 19 19 C 1.50706 * 109.47186 * 170.00007 * 18 16 15 20 20 H 1.07988 * 120.00246 * 0.02562 * 19 18 16 21 21 C 1.37881 * 119.99650 * 179.97438 * 19 18 16 22 22 N 1.31515 * 119.99939 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00326 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47357 * 89.99723 * 23 21 19 25 25 H 1.48496 * 109.47393 * 210.00127 * 23 21 19 26 26 H 1.48501 * 109.47004 * 330.00102 * 23 21 19 27 27 C 1.52999 * 109.47317 * 59.99960 * 8 7 6 28 28 H 1.09009 * 109.46694 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47431 * 300.00110 * 1 2 3 30 30 H 1.08998 * 109.47004 * 60.00543 * 1 2 3 31 31 H 1.08993 * 109.47194 * 59.99666 * 5 3 2 32 32 H 1.09002 * 109.46695 * 299.99680 * 5 3 2 33 33 H 1.08992 * 109.47063 * 299.99823 * 6 5 3 34 34 H 1.09004 * 109.46733 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 36 36 H 1.09001 * 109.47194 * 180.02562 * 7 6 5 37 37 H 1.00903 * 111.00093 * 321.05235 * 10 8 7 38 38 H 1.08993 * 109.47111 * 300.00155 * 11 10 8 39 39 H 1.09002 * 109.46900 * 60.00465 * 11 10 8 40 40 H 0.96705 * 114.00020 * 300.00248 * 14 12 11 41 41 H 1.09005 * 109.46848 * 305.00236 * 15 12 11 42 42 H 1.09003 * 109.46866 * 64.99376 * 15 12 11 43 43 H 1.09003 * 109.46901 * 60.00064 * 17 16 15 44 44 H 1.09007 * 109.47107 * 179.97438 * 17 16 15 45 45 H 1.08999 * 109.47229 * 300.00048 * 17 16 15 46 46 H 1.09002 * 109.47401 * 290.00111 * 18 16 15 47 47 H 1.09004 * 109.47175 * 49.99830 * 18 16 15 48 48 H 0.96995 * 120.00279 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.47486 * 180.02562 * 27 8 7 50 50 H 1.09002 * 109.46716 * 60.00091 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4015 -1.3073 6 6 2.0875 3.8922 -1.3076 7 6 3.6025 4.0654 -1.1821 8 6 4.0817 3.4313 0.1252 9 1 3.5894 3.9182 0.9670 10 7 5.5362 3.5981 0.2460 11 6 5.8696 4.9039 0.8306 12 6 7.3896 5.0407 0.9396 13 1 7.8336 4.9629 -0.0528 14 8 7.9028 4.0002 1.7740 15 6 7.7369 6.4005 1.5491 16 7 9.1946 6.5815 1.5437 17 6 9.7088 6.6723 0.1706 18 6 9.5815 7.7606 2.3298 19 6 11.0780 7.7768 2.5077 20 1 11.6812 6.9902 2.0793 21 6 11.6769 8.7966 3.2165 22 7 12.9828 8.8111 3.3713 23 14 10.6335 10.1576 3.9569 24 1 10.2253 9.7757 5.3327 25 1 11.4220 11.4150 4.0056 26 1 9.4236 10.3641 3.1211 27 6 3.7370 1.9407 0.1255 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 0.6636 2.2777 -1.3970 32 1 2.2355 1.9149 -2.1491 33 1 1.5952 4.3791 -0.4658 34 1 1.7464 4.3438 -2.2392 35 1 4.0948 3.5785 -2.0240 36 1 3.8480 5.1274 -1.1818 37 1 5.9897 3.4753 -0.6470 38 1 5.4785 5.6975 0.1940 39 1 5.4253 4.9819 1.8229 40 1 7.5502 4.0082 2.6744 41 1 7.2703 7.1915 0.9620 42 1 7.3691 6.4437 2.5742 43 1 9.2492 7.5222 -0.3340 44 1 10.7903 6.8066 0.1957 45 1 9.4685 5.7561 -0.3687 46 1 9.2679 8.6645 1.8075 47 1 9.0999 7.7200 3.3068 48 1 13.4042 9.5286 3.8696 49 1 4.0781 1.4891 1.0571 50 1 4.2294 1.4538 -0.7163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580889243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:47 Heat of formation + Delta-G solvation = -60.615721 kcal Electronic energy + Delta-G solvation = -24568.915183 eV Core-core repulsion = 21142.529581 eV Total energy + Delta-G solvation = -3426.385602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.45736 -38.04205 -35.82621 -34.60051 -32.45765 -31.27576 -30.76115 -29.42574 -28.59238 -27.46356 -25.69910 -23.55838 -23.07653 -22.04947 -21.31451 -20.31786 -20.10575 -17.04163 -16.94756 -16.36610 -15.80699 -15.65711 -15.17332 -14.93795 -14.92208 -14.61419 -14.33102 -14.17751 -14.06874 -13.90011 -13.62220 -13.36491 -13.30784 -12.72836 -12.72226 -12.40448 -12.24969 -12.08789 -11.92749 -11.63396 -11.54907 -11.27309 -11.21148 -10.98014 -10.94954 -10.80161 -10.74314 -10.52690 -10.28812 -10.12331 -10.00660 -9.50633 -9.21233 -8.56432 -8.52068 -8.07130 -7.32958 -6.04095 -4.01236 1.27313 2.18297 3.27453 3.34800 3.35877 3.72654 4.16815 4.37615 4.41775 4.49152 4.59151 4.65189 4.69522 4.70973 4.73559 4.80710 4.94552 4.97086 5.07409 5.09700 5.12884 5.23874 5.26749 5.30374 5.40327 5.48736 5.51652 5.55800 5.58391 5.62671 5.69427 5.71211 5.90562 5.92883 5.96438 6.09721 6.21044 6.31474 6.67973 6.81651 6.85408 6.98711 7.18427 7.58905 7.90076 8.00484 8.14591 8.67167 9.05768 9.57316 11.09089 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.031912 B = 0.001995 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.199562 B =14028.841324 C =14186.376494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.262 6.262 3 C -0.049 4.049 4 H 0.086 0.914 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.152 4.152 8 C 0.095 3.905 9 H 0.077 0.923 10 N -0.672 5.672 11 C 0.027 3.973 12 C 0.117 3.883 13 H 0.093 0.907 14 O -0.534 6.534 15 C 0.022 3.978 16 N -0.520 5.520 17 C 0.035 3.965 18 C 0.162 3.838 19 C -0.508 4.508 20 H 0.082 0.918 21 C 0.067 3.933 22 N -0.900 5.900 23 Si 0.875 3.125 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.270 1.270 27 C -0.085 4.085 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.343 0.657 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.368 0.632 41 H 0.027 0.973 42 H 0.070 0.930 43 H 0.008 0.992 44 H 0.081 0.919 45 H 0.050 0.950 46 H -0.014 1.014 47 H 0.022 0.978 48 H 0.263 0.737 49 H 0.081 0.919 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.096 -12.822 -9.824 32.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.033 6.033 3 C -0.178 4.178 4 H 0.104 0.896 5 C -0.153 4.153 6 C -0.152 4.152 7 C -0.191 4.191 8 C -0.017 4.017 9 H 0.095 0.905 10 N -0.301 5.301 11 C -0.103 4.103 12 C 0.056 3.944 13 H 0.111 0.889 14 O -0.337 6.337 15 C -0.108 4.108 16 N -0.243 5.243 17 C -0.113 4.113 18 C 0.036 3.964 19 C -0.546 4.546 20 H 0.100 0.900 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.703 3.297 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.194 1.194 27 C -0.125 4.125 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.162 0.838 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.214 0.786 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.026 0.974 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.004 0.996 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.099 0.901 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.680 -14.537 -9.426 31.812 hybrid contribution -2.330 3.447 -0.176 4.164 sum -29.010 -11.090 -9.602 32.508 Atomic orbital electron populations 1.23390 0.94596 1.06378 1.04795 1.87014 1.06905 1.11482 1.97898 1.23195 1.00672 0.93052 1.00890 0.89602 1.21880 1.00758 0.95880 0.96793 1.21477 0.95982 0.95642 1.02109 1.22332 0.96436 1.01232 0.99144 1.21535 0.88603 0.95027 0.96569 0.90520 1.60386 1.07103 1.31698 1.30948 1.22752 0.97829 0.89684 1.00023 1.21862 0.90025 0.87156 0.95347 0.88880 1.86615 1.70152 1.51366 1.25586 1.22789 0.91505 0.95929 1.00576 1.61841 1.07475 1.42446 1.12572 1.22296 1.02381 0.97786 0.88864 1.20197 0.97875 0.86018 0.92346 1.21044 0.89640 1.09943 1.33974 0.90022 1.24910 0.94818 0.97711 0.95983 1.69893 1.08892 1.33324 1.41789 0.86865 0.80730 0.82078 0.80070 1.20142 1.21203 1.19448 1.21279 0.90930 0.96208 1.04048 0.88197 0.90606 0.90557 0.92025 0.90593 0.91897 0.91551 0.91413 0.91793 0.83842 0.94671 0.90740 0.78562 0.95533 0.91135 0.97351 0.90050 0.93166 0.99628 0.95976 0.92679 0.90075 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.45 101.05 1.06 0.40 16 2 S -0.26 -2.15 21.79 -107.50 -2.34 -4.49 16 3 C -0.05 -0.35 2.65 -26.73 -0.07 -0.42 16 4 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 5 C -0.11 -0.69 5.11 -26.73 -0.14 -0.82 16 6 C -0.11 -0.65 5.92 -26.73 -0.16 -0.81 16 7 C -0.15 -1.04 5.17 -26.73 -0.14 -1.18 16 8 C 0.09 0.75 2.47 -67.72 -0.17 0.58 16 9 H 0.08 0.63 7.80 -51.93 -0.40 0.23 16 10 N -0.67 -6.51 6.12 -106.73 -0.65 -7.16 16 11 C 0.03 0.28 5.15 -3.82 -0.02 0.26 16 12 C 0.12 1.58 3.13 -26.73 -0.08 1.49 16 13 H 0.09 1.31 6.34 -51.93 -0.33 0.98 16 14 O -0.53 -8.25 13.15 -35.23 -0.46 -8.72 16 15 C 0.02 0.35 4.59 -3.83 -0.02 0.34 16 16 N -0.52 -10.93 4.70 -244.36 -1.15 -12.08 16 17 C 0.04 0.68 9.15 60.07 0.55 1.23 16 18 C 0.16 3.96 3.79 -4.98 -0.02 3.94 16 19 C -0.51 -14.61 9.01 -34.44 -0.31 -14.93 16 20 H 0.08 2.57 7.37 -52.49 -0.39 2.19 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 23 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 27 C -0.09 -0.70 4.82 -26.73 -0.13 -0.82 16 28 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.34 7.14 -51.92 -0.37 -0.03 16 31 H 0.06 0.33 6.92 -51.93 -0.36 -0.03 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 36 H 0.06 0.46 7.45 -51.93 -0.39 0.08 16 37 H 0.34 3.27 8.47 -39.29 -0.33 2.94 16 38 H 0.04 0.34 7.43 -51.93 -0.39 -0.04 16 39 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.37 4.73 9.05 45.56 0.41 5.14 16 41 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 42 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.08 1.78 6.76 -51.93 -0.35 1.43 16 45 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 46 H -0.01 -0.34 7.18 -51.93 -0.37 -0.72 16 47 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -31.87 394.28 -10.93 -42.80 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.63 Total: 2.68 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 0.26 Total: -8.87 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -1.03 Total: -46.24 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.46 Total: -8.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.34 Total: -4.49 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.87 -10.93 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580889243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.811 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds