Wall clock time and date at job start Tue Mar 31 2020 10:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81399 * 102.99839 * 2 1 4 4 H 1.09002 * 109.47098 * 54.99897 * 3 2 1 5 5 C 1.52997 * 109.47065 * 294.99909 * 3 2 1 6 6 C 1.53002 * 109.46817 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47233 * 60.00194 * 6 5 3 8 8 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 9 9 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 10 10 N 1.46894 * 109.47515 * 180.02562 * 8 7 6 11 11 C 1.46908 * 110.99837 * 84.99962 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47282 * 60.00347 * 12 11 10 14 14 O 1.42897 * 109.47270 * 300.00002 * 12 11 10 15 15 C 1.53006 * 109.47087 * 180.02562 * 12 11 10 16 16 N 1.46891 * 109.47364 * 184.99856 * 15 12 11 17 17 C 1.46907 * 110.99932 * 66.04558 * 16 15 12 18 18 C 1.46895 * 111.00197 * 189.99900 * 16 15 12 19 19 C 1.50706 * 109.47186 * 170.00007 * 18 16 15 20 20 H 1.07988 * 120.00246 * 0.02562 * 19 18 16 21 21 C 1.37881 * 119.99650 * 179.97438 * 19 18 16 22 22 N 1.31515 * 119.99939 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00326 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47357 * 89.99723 * 23 21 19 25 25 H 1.48496 * 109.47393 * 210.00127 * 23 21 19 26 26 H 1.48501 * 109.47004 * 330.00102 * 23 21 19 27 27 C 1.52999 * 109.47317 * 59.99960 * 8 7 6 28 28 H 1.09009 * 109.46694 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47431 * 300.00110 * 1 2 3 30 30 H 1.08998 * 109.47004 * 60.00543 * 1 2 3 31 31 H 1.08993 * 109.47194 * 59.99666 * 5 3 2 32 32 H 1.09002 * 109.46695 * 299.99680 * 5 3 2 33 33 H 1.08992 * 109.47063 * 299.99823 * 6 5 3 34 34 H 1.09004 * 109.46733 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 36 36 H 1.09001 * 109.47194 * 180.02562 * 7 6 5 37 37 H 1.00903 * 111.00093 * 321.05235 * 10 8 7 38 38 H 1.08993 * 109.47111 * 300.00155 * 11 10 8 39 39 H 1.09002 * 109.46900 * 60.00465 * 11 10 8 40 40 H 0.96705 * 114.00020 * 300.00248 * 14 12 11 41 41 H 1.09005 * 109.46848 * 305.00236 * 15 12 11 42 42 H 1.09003 * 109.46866 * 64.99376 * 15 12 11 43 43 H 1.09003 * 109.46901 * 60.00064 * 17 16 15 44 44 H 1.09007 * 109.47107 * 179.97438 * 17 16 15 45 45 H 1.08999 * 109.47229 * 300.00048 * 17 16 15 46 46 H 1.09002 * 109.47401 * 290.00111 * 18 16 15 47 47 H 1.09004 * 109.47175 * 49.99830 * 18 16 15 48 48 H 0.96995 * 120.00279 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.47486 * 180.02562 * 27 8 7 50 50 H 1.09002 * 109.46716 * 60.00091 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4015 -1.3073 6 6 2.0875 3.8922 -1.3076 7 6 3.6025 4.0654 -1.1821 8 6 4.0817 3.4313 0.1252 9 1 3.5894 3.9182 0.9670 10 7 5.5362 3.5981 0.2460 11 6 5.8696 4.9039 0.8306 12 6 7.3896 5.0407 0.9396 13 1 7.8336 4.9629 -0.0528 14 8 7.9028 4.0002 1.7740 15 6 7.7369 6.4005 1.5491 16 7 9.1946 6.5815 1.5437 17 6 9.7088 6.6723 0.1706 18 6 9.5815 7.7606 2.3298 19 6 11.0780 7.7768 2.5077 20 1 11.6812 6.9902 2.0793 21 6 11.6769 8.7966 3.2165 22 7 12.9828 8.8111 3.3713 23 14 10.6335 10.1576 3.9569 24 1 10.2253 9.7757 5.3327 25 1 11.4220 11.4150 4.0056 26 1 9.4236 10.3641 3.1211 27 6 3.7370 1.9407 0.1255 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 0.6636 2.2777 -1.3970 32 1 2.2355 1.9149 -2.1491 33 1 1.5952 4.3791 -0.4658 34 1 1.7464 4.3438 -2.2392 35 1 4.0948 3.5785 -2.0240 36 1 3.8480 5.1274 -1.1818 37 1 5.9897 3.4753 -0.6470 38 1 5.4785 5.6975 0.1940 39 1 5.4253 4.9819 1.8229 40 1 7.5502 4.0082 2.6744 41 1 7.2703 7.1915 0.9620 42 1 7.3691 6.4437 2.5742 43 1 9.2492 7.5222 -0.3340 44 1 10.7903 6.8066 0.1957 45 1 9.4685 5.7561 -0.3687 46 1 9.2679 8.6645 1.8075 47 1 9.0999 7.7200 3.3068 48 1 13.4042 9.5286 3.8696 49 1 4.0781 1.4891 1.0571 50 1 4.2294 1.4538 -0.7163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580889243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:47 Heat of formation + Delta-G solvation = -84.733593 kcal Electronic energy + Delta-G solvation = -24569.961012 eV Core-core repulsion = 21142.529581 eV Total energy + Delta-G solvation = -3427.431431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.16157 -39.21754 -37.21271 -35.45256 -34.59452 -31.84459 -31.73601 -30.34644 -29.62782 -28.85274 -27.06608 -24.88658 -23.70544 -22.72081 -22.56926 -21.71789 -20.93133 -19.02772 -17.71597 -17.38659 -16.97972 -16.65133 -16.26159 -16.03052 -15.85278 -15.62593 -15.56304 -15.31066 -14.81873 -14.69611 -14.51968 -14.32070 -14.26855 -13.96905 -13.87610 -13.49718 -13.27754 -13.12014 -12.88838 -12.76376 -12.52464 -12.47596 -12.40509 -12.28998 -12.13043 -11.91196 -11.81566 -11.60797 -11.51126 -11.48497 -11.34935 -10.78413 -10.71856 -10.58491 -9.24183 -8.95227 -8.69708 -8.27853 -6.31684 0.74071 1.34303 1.36283 1.46679 1.67884 2.34366 2.87938 3.04962 3.35284 3.62692 3.75514 3.85380 3.91087 4.01894 4.04923 4.15346 4.21567 4.31474 4.32132 4.34837 4.36795 4.41261 4.47015 4.51524 4.53314 4.62590 4.64928 4.68012 4.77609 4.87007 4.89375 4.95444 5.00697 5.01796 5.08401 5.11084 5.14382 5.18576 5.26135 5.31641 5.38842 5.53006 5.98092 6.10577 6.36068 6.44562 6.67402 6.75104 7.08008 7.31751 8.89005 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.031912 B = 0.001995 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.199562 B =14028.841324 C =14186.376494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.321 6.321 3 C -0.035 4.035 4 H 0.090 0.910 5 C -0.108 4.108 6 C -0.108 4.108 7 C -0.147 4.147 8 C 0.100 3.900 9 H 0.079 0.921 10 N -0.683 5.683 11 C 0.041 3.959 12 C 0.125 3.875 13 H 0.087 0.913 14 O -0.557 6.557 15 C 0.022 3.978 16 N -0.542 5.542 17 C 0.041 3.959 18 C 0.172 3.828 19 C -0.518 4.518 20 H 0.034 0.966 21 C 0.004 3.996 22 N -0.949 5.949 23 Si 0.952 3.048 24 H -0.264 1.264 25 H -0.282 1.282 26 H -0.250 1.250 27 C -0.079 4.079 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.343 0.657 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.378 0.622 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.021 0.979 44 H 0.044 0.956 45 H 0.075 0.925 46 H -0.012 1.012 47 H 0.029 0.971 48 H 0.267 0.733 49 H 0.062 0.938 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.699 -11.805 -10.007 35.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.093 6.093 3 C -0.164 4.164 4 H 0.109 0.891 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.186 4.186 8 C -0.011 4.011 9 H 0.097 0.903 10 N -0.313 5.313 11 C -0.089 4.089 12 C 0.064 3.936 13 H 0.105 0.895 14 O -0.362 6.362 15 C -0.107 4.107 16 N -0.266 5.266 17 C -0.107 4.107 18 C 0.045 3.955 19 C -0.556 4.556 20 H 0.052 0.948 21 C -0.193 4.193 22 N -0.590 5.590 23 Si 0.775 3.225 24 H -0.189 1.189 25 H -0.208 1.208 26 H -0.174 1.174 27 C -0.119 4.119 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.162 0.838 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.226 0.774 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.005 0.995 47 H 0.047 0.953 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -30.312 -13.542 -9.622 34.566 hybrid contribution -1.167 2.997 -0.164 3.220 sum -31.479 -10.546 -9.786 34.611 Atomic orbital electron populations 1.23418 0.91394 1.07218 1.05756 1.87224 1.10571 1.13422 1.98044 1.23117 0.99698 0.91832 1.01762 0.89129 1.21837 1.01333 0.95882 0.95707 1.21460 0.95136 0.95349 1.02860 1.22268 0.97198 1.00985 0.98185 1.21491 0.87518 0.94729 0.97366 0.90326 1.60345 1.08321 1.31445 1.31175 1.22536 0.95153 0.90410 1.00796 1.21796 0.92185 0.85228 0.94356 0.89508 1.86582 1.71017 1.52026 1.26579 1.22901 0.88201 0.97856 1.01707 1.61720 1.11036 1.40833 1.12987 1.22205 1.00131 0.99630 0.88773 1.19949 0.94695 0.87547 0.93314 1.21289 0.92026 1.08761 1.33558 0.94773 1.25915 0.96159 1.00745 0.96472 1.70062 1.11173 1.34680 1.43077 0.85651 0.79212 0.78059 0.79594 1.18873 1.20769 1.17386 1.21185 0.91823 0.96270 1.02585 0.87465 0.89764 0.89397 0.90887 0.91329 0.91304 0.90628 0.91659 0.91698 0.83822 0.93349 0.90090 0.77431 0.94008 0.90415 0.96024 0.93715 0.90677 0.99473 0.95290 0.92440 0.91909 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.45 113.37 1.18 0.22 16 2 S -0.32 -5.08 21.79 -56.49 -1.23 -6.31 16 3 C -0.04 -0.45 2.65 30.60 0.08 -0.37 16 4 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.11 -1.08 5.11 30.59 0.16 -0.92 16 6 C -0.11 -0.97 5.92 30.60 0.18 -0.79 16 7 C -0.15 -1.67 5.17 30.59 0.16 -1.51 16 8 C 0.10 1.41 2.47 44.92 0.11 1.52 16 9 H 0.08 1.10 7.80 -2.39 -0.02 1.08 16 10 N -0.68 -12.10 6.12 -491.58 -3.01 -15.11 16 11 C 0.04 0.75 5.15 86.30 0.44 1.19 16 12 C 0.12 3.13 3.13 30.60 0.10 3.23 16 13 H 0.09 2.29 6.34 -2.39 -0.02 2.28 16 14 O -0.56 -16.63 13.15 -148.98 -1.96 -18.59 16 15 C 0.02 0.67 4.59 86.31 0.40 1.06 16 16 N -0.54 -22.40 4.70 -927.01 -4.36 -26.76 16 17 C 0.04 1.58 9.15 127.69 1.17 2.75 16 18 C 0.17 8.28 3.79 85.56 0.32 8.60 16 19 C -0.52 -30.59 9.01 25.60 0.23 -30.36 16 20 H 0.03 2.27 7.37 -2.92 -0.02 2.25 16 21 C 0.00 0.24 5.47 84.66 0.46 0.70 16 22 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 23 Si 0.95 44.08 27.47 68.60 1.88 45.97 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 26 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 27 C -0.08 -1.24 4.82 30.60 0.15 -1.09 16 28 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.57 7.14 -2.39 -0.02 0.56 16 31 H 0.07 0.58 6.92 -2.39 -0.02 0.57 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 36 H 0.06 0.75 7.45 -2.39 -0.02 0.74 16 37 H 0.34 6.06 8.47 -89.69 -0.76 5.30 16 38 H 0.05 0.77 7.43 -2.39 -0.02 0.76 16 39 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 40 H 0.38 9.28 9.05 -74.05 -0.67 8.61 16 41 H 0.04 1.15 8.12 -2.38 -0.02 1.13 16 42 H 0.08 2.22 7.93 -2.39 -0.02 2.20 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.04 2.03 6.76 -2.38 -0.02 2.01 16 45 H 0.07 2.49 6.37 -2.39 -0.02 2.47 16 46 H -0.01 -0.59 7.18 -2.39 -0.02 -0.60 16 47 H 0.03 1.36 7.36 -2.38 -0.02 1.34 16 48 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 49 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.68 394.28 -3.81 -74.49 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.58 Total: 21.99 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 5.14 Total: -15.77 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -7.07 Total: -101.78 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -1.96 Total: -18.59 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.23 Total: -6.31 kcal Total: -70.68 -3.81 -74.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580889243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.246 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds