Wall clock time and date at job start Tue Mar 31 2020 12:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00283 * 2 1 4 4 C 1.38214 * 119.99957 * 180.25550 * 3 2 1 5 5 C 1.38253 * 119.99978 * 359.51084 * 4 3 2 6 6 C 1.38213 * 120.00331 * 0.44451 * 5 4 3 7 7 C 1.38214 * 119.99908 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99899 * 359.97438 * 7 2 1 9 9 N 1.46899 * 109.47020 * 284.68881 * 8 7 2 10 10 C 1.47915 * 110.99937 * 292.20127 * 9 8 7 11 11 C 1.50802 * 108.49819 * 153.78621 * 10 9 8 12 12 C 1.53698 * 112.09979 * 92.55000 * 11 10 9 13 13 N 1.48069 * 112.46974 * 318.55707 * 12 11 10 14 14 C 1.46901 * 110.99935 * 192.19930 * 13 12 11 15 15 H 1.08995 * 109.47326 * 187.68195 * 14 13 12 16 16 C 1.53006 * 109.47352 * 67.68148 * 14 13 12 17 17 C 1.53001 * 109.46737 * 307.68364 * 14 13 12 18 18 C 1.50695 * 109.47200 * 295.00020 * 17 14 13 19 19 H 1.08003 * 120.00459 * 0.02562 * 18 17 14 20 20 C 1.37879 * 119.99917 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00039 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47409 * 89.99317 * 22 20 18 24 24 H 1.48502 * 109.47242 * 209.99816 * 22 20 18 25 25 H 1.48508 * 109.46872 * 329.99741 * 22 20 18 26 26 C 1.44577 * 113.84954 * 318.30986 * 13 12 11 27 27 C 1.40010 * 111.00346 * 164.22940 * 9 8 7 28 28 H 1.09000 * 109.47422 * 95.26316 * 1 2 3 29 29 H 1.09004 * 109.47478 * 215.26825 * 1 2 3 30 30 H 1.09002 * 109.46928 * 335.26701 * 1 2 3 31 31 H 1.07997 * 119.99782 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.99962 * 179.72400 * 4 3 2 33 33 H 1.08003 * 120.00245 * 180.27577 * 5 4 3 34 34 H 1.08000 * 120.00494 * 179.83707 * 6 5 4 35 35 H 1.08994 * 109.47312 * 44.68986 * 8 7 2 36 36 H 1.08998 * 109.47342 * 164.69168 * 8 7 2 37 37 H 1.08997 * 109.63234 * 273.49322 * 10 9 8 38 38 H 1.08995 * 109.63049 * 34.08667 * 10 9 8 39 39 H 1.08999 * 108.95971 * 331.87677 * 11 10 9 40 40 H 1.08994 * 108.88901 * 213.17581 * 11 10 9 41 41 H 1.08997 * 108.88697 * 197.78003 * 12 11 10 42 42 H 1.09006 * 108.88199 * 79.32185 * 12 11 10 43 43 H 1.08999 * 109.46542 * 60.00706 * 16 14 13 44 44 H 1.08997 * 109.46678 * 180.02562 * 16 14 13 45 45 H 1.08995 * 109.46944 * 300.00281 * 16 14 13 46 46 H 1.09002 * 109.47213 * 55.00511 * 17 14 13 47 47 H 1.09007 * 109.47129 * 175.00210 * 17 14 13 48 48 H 0.97010 * 119.99414 * 180.02562 * 21 20 18 49 49 H 1.08994 * 109.58014 * 334.42652 * 26 13 12 50 50 H 1.09007 * 109.67586 * 214.09971 * 26 13 12 51 51 H 1.08999 * 108.96084 * 308.77196 * 27 9 8 52 52 H 1.09008 * 108.95445 * 67.42349 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0053 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 7 0.8960 -2.7496 1.3418 10 6 1.9771 -3.0089 2.3174 11 6 1.4868 -2.6202 3.6895 12 6 0.8602 -3.8077 4.4375 13 7 0.0099 -4.6442 3.5601 14 6 -0.7952 -5.5857 4.3496 15 1 -1.3060 -6.2775 3.6798 16 6 -1.8299 -4.8106 5.1679 17 6 0.1179 -6.3704 5.2937 18 6 1.0571 -7.2287 4.4862 19 1 1.0081 -7.2155 3.4073 20 6 1.9791 -8.0308 5.1246 21 7 2.0392 -8.0465 6.4382 22 14 3.1439 -9.0941 4.1235 23 1 4.3827 -8.3298 3.8291 24 1 3.4873 -10.3149 4.8961 25 1 2.4877 -9.4829 2.8493 26 6 -0.8220 -3.8836 2.6548 27 6 -0.0901 -3.7429 1.3049 28 1 -0.3634 -0.0943 -1.0233 29 1 -0.3634 -0.8391 0.5934 30 1 -0.3633 0.9334 0.4300 31 1 1.6583 2.1326 -0.0004 32 1 4.1205 2.1325 -0.0098 33 1 5.3517 -0.0002 -0.0001 34 1 4.1206 -2.1324 0.0016 35 1 0.6298 -2.4520 -0.7207 36 1 2.1210 -3.3126 -0.2693 37 1 2.2338 -4.0682 2.3067 38 1 2.8534 -2.4142 2.0596 39 1 0.7409 -1.8319 3.5888 40 1 2.3273 -2.2399 4.2699 41 1 0.2527 -3.4268 5.2584 42 1 1.6580 -4.4261 4.8490 43 1 -2.4804 -4.2517 4.4952 44 1 -2.4269 -5.5093 5.7540 45 1 -1.3191 -4.1189 5.8377 46 1 0.6946 -5.6746 5.9031 47 1 -0.4878 -7.0046 5.9412 48 1 2.6882 -8.6106 6.8873 49 1 -1.0088 -2.8949 3.0737 50 1 -1.7694 -4.4015 2.5041 51 1 -0.8169 -3.4918 0.5323 52 1 0.3763 -4.6957 1.0538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591010694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:52 Heat of formation + Delta-G solvation = 32.895853 kcal Electronic energy + Delta-G solvation = -27828.325957 eV Core-core repulsion = 24406.384465 eV Total energy + Delta-G solvation = -3421.941492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.02430 -38.87277 -36.64754 -33.35148 -32.70293 -32.23781 -31.81737 -30.38607 -27.57590 -27.36753 -26.61881 -25.55554 -24.45305 -22.98374 -22.02355 -20.90229 -20.63900 -20.05117 -18.27246 -16.47822 -16.18572 -16.14274 -15.74405 -15.35868 -15.15283 -14.61379 -14.57659 -14.24415 -13.98974 -13.50236 -13.25740 -13.10536 -13.02413 -12.67128 -12.57924 -12.26165 -12.17005 -12.02887 -11.80059 -11.71542 -11.52038 -11.36305 -11.17563 -10.98352 -10.89313 -10.75982 -10.74279 -10.63311 -10.36169 -10.25361 -10.08320 -9.79350 -9.08555 -8.98083 -8.84196 -8.60083 -8.25854 -7.95302 -7.27179 -5.89123 -3.87010 1.30749 1.35873 3.37867 3.44153 3.48035 3.65380 4.26798 4.54950 4.63000 4.75490 4.79544 4.93199 4.99430 5.19741 5.28592 5.32002 5.43413 5.48061 5.52417 5.56888 5.59929 5.63517 5.67081 5.70106 5.79518 5.85098 5.88271 5.92768 5.97451 6.02569 6.06696 6.10613 6.19372 6.23358 6.29179 6.40388 6.43751 6.45937 6.47000 6.55103 6.58363 6.68203 6.77592 6.92465 6.98222 7.01768 7.34704 7.55521 7.66684 7.78669 8.03244 8.13555 8.17274 8.58796 9.19616 9.74893 11.22750 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.003619 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.766848 B = 7735.009495 C = 8717.412491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.060 4.060 3 C -0.127 4.127 4 C -0.121 4.121 5 C -0.129 4.129 6 C -0.111 4.111 7 C -0.073 4.073 8 C 0.097 3.903 9 N -0.543 5.543 10 C 0.070 3.930 11 C -0.114 4.114 12 C 0.065 3.935 13 N -0.527 5.527 14 C 0.092 3.908 15 H 0.068 0.932 16 C -0.183 4.183 17 C 0.026 3.974 18 C -0.489 4.489 19 H 0.060 0.940 20 C 0.051 3.949 21 N -0.903 5.903 22 Si 0.888 3.112 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.067 3.933 27 C 0.075 3.925 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.020 0.980 47 H 0.016 0.984 48 H 0.257 0.743 49 H 0.040 0.960 50 H 0.064 0.936 51 H 0.060 0.940 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 17.503 -12.797 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.147 4.147 6 C -0.129 4.129 7 C -0.073 4.073 8 C -0.030 4.030 9 N -0.267 5.267 10 C -0.056 4.056 11 C -0.152 4.152 12 C -0.062 4.062 13 N -0.251 5.251 14 C -0.016 4.016 15 H 0.086 0.914 16 C -0.242 4.242 17 C -0.011 4.011 18 C -0.528 4.528 19 H 0.078 0.922 20 C -0.148 4.148 21 N -0.544 5.544 22 Si 0.716 3.284 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.201 1.201 26 C -0.063 4.063 27 C -0.055 4.055 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.038 0.962 47 H 0.034 0.966 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.078 0.922 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.685 17.524 -12.776 21.752 hybrid contribution 0.674 -0.808 -0.138 1.062 sum -1.011 16.716 -12.914 21.147 Atomic orbital electron populations 1.20880 0.91202 1.03604 1.01944 1.19731 0.96197 0.92210 0.97879 1.21029 0.94224 0.97437 1.01796 1.21075 0.94355 0.97846 1.00672 1.21057 0.99649 0.92550 1.01468 1.21097 0.93750 0.98107 0.99990 1.19681 0.93158 0.94632 0.99856 1.20950 0.97688 0.93059 0.91267 1.59263 1.14389 1.47133 1.05931 1.21765 0.92047 1.00671 0.91165 1.21404 1.00255 0.98028 0.95563 1.22383 0.97182 0.93268 0.93413 1.60768 1.24183 1.19011 1.21125 1.21909 0.92492 0.92571 0.94594 0.91391 1.22537 0.99976 1.00929 1.00747 1.19251 0.93782 0.94434 0.93609 1.21165 1.16122 1.22215 0.93280 0.92206 1.24999 0.97721 0.97362 0.94727 1.69967 1.36497 1.40569 1.07368 0.86665 0.81473 0.80033 0.80188 1.20979 1.21613 1.20070 1.21807 0.94782 0.96764 0.92917 1.21026 0.93744 0.93125 0.97653 0.91949 0.89225 0.92304 0.86479 0.86532 0.86424 0.86312 0.90336 0.94078 0.92316 0.91750 0.91895 0.91989 0.95635 0.89533 0.94136 0.92734 0.93112 0.96164 0.96561 0.93344 0.94140 0.91739 0.92173 0.94890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.21 36.00 0.33 -0.82 16 2 C -0.06 -0.66 5.88 -104.62 -0.62 -1.28 16 3 C -0.13 -1.30 9.68 -39.58 -0.38 -1.68 16 4 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 5 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 6 C -0.11 -1.25 8.49 -39.58 -0.34 -1.58 16 7 C -0.07 -0.84 4.64 -104.62 -0.49 -1.33 16 8 C 0.10 1.14 4.25 -4.97 -0.02 1.12 16 9 N -0.54 -7.19 3.00 -241.20 -0.72 -7.91 16 10 C 0.07 1.05 5.15 -4.37 -0.02 1.02 16 11 C -0.11 -1.75 5.36 -27.47 -0.15 -1.90 16 12 C 0.06 1.18 4.34 -2.82 -0.01 1.16 16 13 N -0.53 -9.71 3.68 -226.32 -0.83 -10.54 16 14 C 0.09 1.85 2.14 -67.71 -0.14 1.71 16 15 H 0.07 1.41 8.07 -51.93 -0.42 0.99 16 16 C -0.18 -3.15 8.73 37.16 0.32 -2.82 16 17 C 0.03 0.66 4.03 -27.88 -0.11 0.55 16 18 C -0.49 -13.52 8.83 -34.44 -0.30 -13.83 16 19 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 20 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 21 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 22 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.07 1.02 4.31 -4.44 -0.02 1.00 16 27 C 0.07 1.04 5.03 -6.76 -0.03 1.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.97 6.38 -51.93 -0.33 0.64 16 30 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 34 H 0.12 1.25 8.00 -52.49 -0.42 0.83 16 35 H 0.08 0.83 7.20 -51.93 -0.37 0.46 16 36 H 0.04 0.50 7.92 -51.93 -0.41 0.09 16 37 H 0.06 1.04 7.57 -51.93 -0.39 0.65 16 38 H 0.06 0.91 6.00 -51.93 -0.31 0.60 16 39 H 0.06 0.95 7.23 -51.93 -0.38 0.58 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.46 6.07 -51.93 -0.32 0.15 16 42 H 0.09 1.88 6.82 -51.93 -0.35 1.52 16 43 H 0.04 0.61 6.89 -51.93 -0.36 0.26 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.89 6.37 -51.93 -0.33 0.55 16 46 H 0.02 0.54 6.27 -51.93 -0.33 0.21 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.04 0.62 6.93 -51.93 -0.36 0.26 16 50 H 0.06 0.95 7.06 -51.92 -0.37 0.58 16 51 H 0.06 0.72 7.76 -51.93 -0.40 0.32 16 52 H 0.03 0.54 8.07 -51.92 -0.42 0.12 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -29.33 387.90 -12.06 -41.39 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -9.19 Total: 0.22 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.87 Total: -19.64 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.82 Total: -44.79 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.33 -12.06 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591010694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.287 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds