Wall clock time and date at job start Tue Mar 31 2020 12:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00283 * 2 1 4 4 C 1.38214 * 119.99957 * 180.25550 * 3 2 1 5 5 C 1.38253 * 119.99978 * 359.51084 * 4 3 2 6 6 C 1.38213 * 120.00331 * 0.44451 * 5 4 3 7 7 C 1.38214 * 119.99908 * 179.97438 * 2 1 3 8 8 C 1.50705 * 119.99899 * 359.97438 * 7 2 1 9 9 N 1.46899 * 109.47020 * 284.68881 * 8 7 2 10 10 C 1.47915 * 110.99937 * 292.20127 * 9 8 7 11 11 C 1.50802 * 108.49819 * 153.78621 * 10 9 8 12 12 C 1.53698 * 112.09979 * 92.55000 * 11 10 9 13 13 N 1.48069 * 112.46974 * 318.55707 * 12 11 10 14 14 C 1.46901 * 110.99935 * 192.19930 * 13 12 11 15 15 H 1.08995 * 109.47326 * 187.68195 * 14 13 12 16 16 C 1.53006 * 109.47352 * 67.68148 * 14 13 12 17 17 C 1.53001 * 109.46737 * 307.68364 * 14 13 12 18 18 C 1.50695 * 109.47200 * 295.00020 * 17 14 13 19 19 H 1.08003 * 120.00459 * 0.02562 * 18 17 14 20 20 C 1.37879 * 119.99917 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00039 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47409 * 89.99317 * 22 20 18 24 24 H 1.48502 * 109.47242 * 209.99816 * 22 20 18 25 25 H 1.48508 * 109.46872 * 329.99741 * 22 20 18 26 26 C 1.44577 * 113.84954 * 318.30986 * 13 12 11 27 27 C 1.40010 * 111.00346 * 164.22940 * 9 8 7 28 28 H 1.09000 * 109.47422 * 95.26316 * 1 2 3 29 29 H 1.09004 * 109.47478 * 215.26825 * 1 2 3 30 30 H 1.09002 * 109.46928 * 335.26701 * 1 2 3 31 31 H 1.07997 * 119.99782 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.99962 * 179.72400 * 4 3 2 33 33 H 1.08003 * 120.00245 * 180.27577 * 5 4 3 34 34 H 1.08000 * 120.00494 * 179.83707 * 6 5 4 35 35 H 1.08994 * 109.47312 * 44.68986 * 8 7 2 36 36 H 1.08998 * 109.47342 * 164.69168 * 8 7 2 37 37 H 1.08997 * 109.63234 * 273.49322 * 10 9 8 38 38 H 1.08995 * 109.63049 * 34.08667 * 10 9 8 39 39 H 1.08999 * 108.95971 * 331.87677 * 11 10 9 40 40 H 1.08994 * 108.88901 * 213.17581 * 11 10 9 41 41 H 1.08997 * 108.88697 * 197.78003 * 12 11 10 42 42 H 1.09006 * 108.88199 * 79.32185 * 12 11 10 43 43 H 1.08999 * 109.46542 * 60.00706 * 16 14 13 44 44 H 1.08997 * 109.46678 * 180.02562 * 16 14 13 45 45 H 1.08995 * 109.46944 * 300.00281 * 16 14 13 46 46 H 1.09002 * 109.47213 * 55.00511 * 17 14 13 47 47 H 1.09007 * 109.47129 * 175.00210 * 17 14 13 48 48 H 0.97010 * 119.99414 * 180.02562 * 21 20 18 49 49 H 1.08994 * 109.58014 * 334.42652 * 26 13 12 50 50 H 1.09007 * 109.67586 * 214.09971 * 26 13 12 51 51 H 1.08999 * 108.96084 * 308.77196 * 27 9 8 52 52 H 1.09008 * 108.95445 * 67.42349 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0053 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 7 0.8960 -2.7496 1.3418 10 6 1.9771 -3.0089 2.3174 11 6 1.4868 -2.6202 3.6895 12 6 0.8602 -3.8077 4.4375 13 7 0.0099 -4.6442 3.5601 14 6 -0.7952 -5.5857 4.3496 15 1 -1.3060 -6.2775 3.6798 16 6 -1.8299 -4.8106 5.1679 17 6 0.1179 -6.3704 5.2937 18 6 1.0571 -7.2287 4.4862 19 1 1.0081 -7.2155 3.4073 20 6 1.9791 -8.0308 5.1246 21 7 2.0392 -8.0465 6.4382 22 14 3.1439 -9.0941 4.1235 23 1 4.3827 -8.3298 3.8291 24 1 3.4873 -10.3149 4.8961 25 1 2.4877 -9.4829 2.8493 26 6 -0.8220 -3.8836 2.6548 27 6 -0.0901 -3.7429 1.3049 28 1 -0.3634 -0.0943 -1.0233 29 1 -0.3634 -0.8391 0.5934 30 1 -0.3633 0.9334 0.4300 31 1 1.6583 2.1326 -0.0004 32 1 4.1205 2.1325 -0.0098 33 1 5.3517 -0.0002 -0.0001 34 1 4.1206 -2.1324 0.0016 35 1 0.6298 -2.4520 -0.7207 36 1 2.1210 -3.3126 -0.2693 37 1 2.2338 -4.0682 2.3067 38 1 2.8534 -2.4142 2.0596 39 1 0.7409 -1.8319 3.5888 40 1 2.3273 -2.2399 4.2699 41 1 0.2527 -3.4268 5.2584 42 1 1.6580 -4.4261 4.8490 43 1 -2.4804 -4.2517 4.4952 44 1 -2.4269 -5.5093 5.7540 45 1 -1.3191 -4.1189 5.8377 46 1 0.6946 -5.6746 5.9031 47 1 -0.4878 -7.0046 5.9412 48 1 2.6882 -8.6106 6.8873 49 1 -1.0088 -2.8949 3.0737 50 1 -1.7694 -4.4015 2.5041 51 1 -0.8169 -3.4918 0.5323 52 1 0.3763 -4.6957 1.0538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591010694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:51 Heat of formation + Delta-G solvation = 18.430359 kcal Electronic energy + Delta-G solvation = -27828.953228 eV Core-core repulsion = 24406.384465 eV Total energy + Delta-G solvation = -3422.568763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.04066 -40.00555 -37.94628 -35.04658 -34.02623 -33.37587 -32.93527 -31.74140 -29.22772 -28.60839 -27.53573 -26.88895 -25.65045 -24.83081 -22.82134 -22.30853 -21.75636 -21.09737 -19.78865 -18.36201 -17.46544 -17.22839 -16.88288 -16.54035 -16.42208 -16.06386 -15.73449 -15.65702 -15.24124 -14.67495 -14.35720 -14.30075 -14.11169 -13.93654 -13.71459 -13.71087 -13.52318 -13.19678 -13.02718 -12.89552 -12.83201 -12.71104 -12.62394 -12.54074 -12.36536 -12.19167 -12.01467 -11.83110 -11.73028 -11.61031 -11.44969 -11.42205 -11.07832 -10.91817 -10.48113 -9.64578 -9.39627 -9.07680 -8.73228 -8.10806 -6.15315 0.50879 0.57421 1.39145 1.39458 1.50343 2.45346 2.80663 3.13188 3.23812 3.28900 3.90169 3.99232 4.02003 4.15351 4.18144 4.23722 4.24418 4.28559 4.41023 4.45988 4.49721 4.56563 4.58277 4.59356 4.66302 4.72939 4.78284 4.81559 4.92035 4.93966 4.96742 4.98954 5.05000 5.11064 5.12593 5.18090 5.20393 5.25136 5.26681 5.34924 5.42340 5.50402 5.51242 5.66387 5.69254 5.74204 5.87039 5.90813 6.20028 6.23772 6.35247 6.47187 6.59623 6.74442 6.98763 7.50602 9.01137 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.003619 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.766848 B = 7735.009495 C = 8717.412491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.138 4.138 6 C -0.126 4.126 7 C -0.087 4.087 8 C 0.101 3.899 9 N -0.534 5.534 10 C 0.078 3.922 11 C -0.103 4.103 12 C 0.074 3.926 13 N -0.541 5.541 14 C 0.100 3.900 15 H 0.064 0.936 16 C -0.172 4.172 17 C 0.034 3.966 18 C -0.495 4.495 19 H 0.055 0.945 20 C -0.003 4.003 21 N -0.939 5.939 22 Si 0.952 3.048 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.069 3.931 27 C 0.081 3.919 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.024 0.976 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.045 0.955 46 H -0.002 1.002 47 H -0.012 1.012 48 H 0.258 0.742 49 H 0.049 0.951 50 H 0.075 0.925 51 H 0.090 0.910 52 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 19.445 -14.753 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.071 4.071 3 C -0.152 4.152 4 C -0.142 4.142 5 C -0.156 4.156 6 C -0.144 4.144 7 C -0.087 4.087 8 C -0.026 4.026 9 N -0.258 5.258 10 C -0.049 4.049 11 C -0.141 4.141 12 C -0.054 4.054 13 N -0.265 5.265 14 C -0.008 4.008 15 H 0.082 0.918 16 C -0.230 4.230 17 C -0.003 4.003 18 C -0.534 4.534 19 H 0.073 0.927 20 C -0.199 4.199 21 N -0.581 5.581 22 Si 0.778 3.222 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.192 1.192 26 C -0.060 4.060 27 C -0.050 4.050 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.006 0.994 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.094 0.906 51 H 0.108 0.892 52 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -2.268 19.476 -14.753 24.538 hybrid contribution 0.869 -1.372 0.457 1.687 sum -1.399 18.104 -14.297 23.111 Atomic orbital electron populations 1.20857 0.90214 1.03620 1.02521 1.19967 0.97064 0.92244 0.97785 1.21322 0.94598 0.97982 1.01276 1.21396 0.94567 0.98581 0.99688 1.21308 1.00601 0.92463 1.01207 1.21228 0.93970 0.98610 1.00623 1.19701 0.93319 0.94695 1.01011 1.20961 0.98067 0.93095 0.90450 1.59301 1.13653 1.46266 1.06566 1.21608 0.93052 0.98577 0.91635 1.21313 1.00555 0.96762 0.95504 1.22202 0.95953 0.93302 0.93901 1.60660 1.24898 1.19743 1.21193 1.21632 0.92184 0.93024 0.93998 0.91829 1.22389 0.99311 1.00629 1.00710 1.19094 0.93660 0.93804 0.93756 1.21437 1.16455 1.22277 0.93184 0.92698 1.25802 0.99486 0.98850 0.95716 1.70093 1.37458 1.41611 1.08963 0.85643 0.79341 0.78285 0.78904 1.20524 1.21138 1.19191 1.21884 0.94841 0.96692 0.92559 1.20988 0.94252 0.92119 0.97601 0.90830 0.90275 0.91381 0.84631 0.84373 0.84958 0.86501 0.88810 0.94951 0.95727 0.90901 0.90723 0.91339 0.95670 0.94061 0.91233 0.92686 0.93593 0.98408 0.99356 0.93316 0.93253 0.90635 0.89218 0.97521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 9.21 71.24 0.66 -1.24 16 2 C -0.07 -1.39 5.88 -19.87 -0.12 -1.51 16 3 C -0.13 -2.40 9.68 22.27 0.22 -2.18 16 4 C -0.12 -2.16 10.05 22.27 0.22 -1.93 16 5 C -0.14 -2.61 10.05 22.27 0.22 -2.39 16 6 C -0.13 -2.70 8.49 22.27 0.19 -2.51 16 7 C -0.09 -1.88 4.64 -19.86 -0.09 -1.97 16 8 C 0.10 2.22 4.25 85.56 0.36 2.59 16 9 N -0.53 -13.39 3.00 -917.03 -2.76 -16.15 16 10 C 0.08 2.33 5.15 85.39 0.44 2.77 16 11 C -0.10 -3.12 5.36 30.12 0.16 -2.96 16 12 C 0.07 2.74 4.34 86.31 0.37 3.12 16 13 N -0.54 -19.99 3.68 -869.94 -3.20 -23.19 16 14 C 0.10 4.05 2.14 44.92 0.10 4.14 16 15 H 0.06 2.63 8.07 -2.39 -0.02 2.61 16 16 C -0.17 -5.74 8.73 71.98 0.63 -5.11 16 17 C 0.03 1.78 4.03 29.85 0.12 1.90 16 18 C -0.50 -28.23 8.83 25.60 0.23 -28.01 16 19 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 20 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 21 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 22 Si 0.95 45.96 29.54 68.60 2.03 47.99 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 C 0.07 1.98 4.31 87.14 0.38 2.36 16 27 C 0.08 2.11 5.03 87.95 0.44 2.56 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.48 6.38 -2.38 -0.02 1.46 16 30 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 31 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.12 2.44 8.00 -2.91 -0.02 2.42 16 35 H 0.09 1.77 7.20 -2.39 -0.02 1.75 16 36 H 0.03 0.77 7.92 -2.39 -0.02 0.75 16 37 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 38 H 0.07 2.04 6.00 -2.39 -0.01 2.03 16 39 H 0.07 2.11 7.23 -2.39 -0.02 2.09 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.03 0.93 6.07 -2.39 -0.01 0.91 16 42 H 0.04 1.89 6.82 -2.38 -0.02 1.88 16 43 H 0.07 1.93 6.89 -2.39 -0.02 1.91 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.05 1.57 6.37 -2.39 -0.02 1.56 16 46 H 0.00 -0.13 6.27 -2.39 -0.01 -0.15 16 47 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 48 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 49 H 0.05 1.36 6.93 -2.39 -0.02 1.34 16 50 H 0.08 2.02 7.06 -2.38 -0.02 2.00 16 51 H 0.09 1.87 7.76 -2.39 -0.02 1.85 16 52 H 0.01 0.21 8.07 -2.38 -0.02 0.19 16 Total: -1.00 -64.90 387.90 2.21 -62.68 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.87 Total: 16.45 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 4.99 Total: -30.07 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -5.67 Total: -97.05 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -64.90 2.21 -62.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591010694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.115 kcal (2) G-P(sol) polarization free energy of solvation -64.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds