Wall clock time and date at job start Tue Mar 31 2020 10:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48505 * 109.46954 * 239.99625 * 3 2 1 5 5 H 1.48501 * 109.47377 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47477 * 119.99558 * 3 2 1 7 7 C 1.37872 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99670 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00101 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.52938 * 300.09830 * 9 7 2 11 11 C 1.53120 * 109.50322 * 60.19037 * 9 7 2 12 12 C 1.53120 * 109.15900 * 177.59540 * 11 9 7 13 13 C 1.53032 * 109.27975 * 302.34989 * 12 11 9 14 14 N 1.46845 * 109.52517 * 59.17651 * 13 12 11 15 15 C 1.46898 * 111.00200 * 174.15908 * 14 13 12 16 16 C 1.50703 * 109.47252 * 288.16655 * 15 14 13 17 17 N 1.30527 * 126.34236 * 277.51440 * 16 15 14 18 18 N 1.28595 * 109.66833 * 180.29973 * 17 16 15 19 19 C 1.30520 * 109.67406 * 359.71836 * 18 17 16 20 20 C 1.50696 * 126.34572 * 179.97438 * 19 18 17 21 21 C 1.53004 * 117.49973 * 8.66613 * 20 19 18 22 22 C 1.52997 * 60.00305 * 252.50901 * 21 20 19 23 23 N 1.35488 * 126.34998 * 97.35060 * 16 15 14 24 24 C 1.46501 * 126.97614 * 359.96992 * 23 16 15 25 25 C 1.52994 * 117.51724 * 48.40322 * 24 23 16 26 26 C 1.52997 * 60.00254 * 107.47904 * 25 24 23 27 27 C 1.46843 * 111.20158 * 298.25908 * 14 13 12 28 28 H 0.97007 * 120.00142 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.52392 * 297.50469 * 11 9 7 30 30 H 1.08998 * 109.51848 * 57.62818 * 11 9 7 31 31 H 1.09004 * 109.50101 * 62.29212 * 12 11 9 32 32 H 1.08998 * 109.50163 * 182.36873 * 12 11 9 33 33 H 1.08999 * 109.46354 * 299.16353 * 13 12 11 34 34 H 1.08996 * 109.46084 * 179.19345 * 13 12 11 35 35 H 1.08999 * 109.47397 * 168.16519 * 15 14 13 36 36 H 1.09001 * 109.47251 * 48.16058 * 15 14 13 37 37 H 1.08999 * 115.55386 * 154.37518 * 20 19 18 38 38 H 1.09000 * 117.49821 * 0.02562 * 21 20 19 39 39 H 1.09004 * 117.49833 * 145.01852 * 21 20 19 40 40 H 1.09005 * 117.50031 * 252.51098 * 22 21 20 41 41 H 1.08994 * 117.52134 * 107.47877 * 22 21 20 42 42 H 1.09003 * 115.55169 * 262.69647 * 24 23 16 43 43 H 1.09006 * 117.49839 * 214.96575 * 25 24 23 44 44 H 1.08994 * 117.50281 * 359.97438 * 25 24 23 45 45 H 1.09008 * 117.49948 * 252.51030 * 26 25 24 46 46 H 1.08997 * 117.50533 * 107.49305 * 26 25 24 47 47 H 1.08998 * 109.46675 * 181.75633 * 27 14 13 48 48 H 1.09002 * 109.46321 * 301.72440 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6224 -2.5570 0.8891 11 6 0.3746 -2.5835 -1.2521 12 6 -0.3409 -3.9370 -1.2747 13 6 0.6991 -5.0590 -1.2371 14 7 1.5114 -4.9347 -0.0201 15 6 2.4285 -6.0738 0.1194 16 6 1.6449 -7.3076 0.4866 17 7 1.2493 -7.6448 1.6839 18 7 0.6119 -8.7604 1.6310 19 6 0.5667 -9.1825 0.3968 20 6 -0.0877 -10.4495 -0.0904 21 6 -0.9408 -11.2334 0.9090 22 6 0.4247 -11.7737 0.4798 23 7 1.2178 -8.2708 -0.3652 24 6 1.4235 -8.3195 -1.8148 25 6 2.8404 -8.0724 -2.3364 26 6 2.2470 -9.4821 -2.3728 27 6 2.2450 -3.6628 0.0011 28 1 -0.4851 0.8401 -0.0004 29 1 -0.3633 -1.7815 -1.2350 30 1 0.9986 -2.4853 -2.1405 31 1 -0.9946 -4.0175 -0.4062 32 1 -0.9339 -4.0200 -2.1855 33 1 1.3438 -4.9861 -2.1130 34 1 0.1924 -6.0240 -1.2386 35 1 3.1571 -5.8600 0.9013 36 1 2.9471 -6.2405 -0.8248 37 1 -0.4113 -10.4414 -1.1312 38 1 -1.0291 -10.8324 1.9187 39 1 -1.8261 -11.7410 0.5257 40 1 0.4379 -12.6368 -0.1859 41 1 1.2354 -11.7284 1.2068 42 1 0.5936 -7.9546 -2.4200 43 1 2.9428 -7.5448 -3.2848 44 1 3.6198 -7.8730 -1.6010 45 1 2.6360 -10.2105 -1.6611 46 1 1.9589 -9.8820 -3.3449 47 1 2.8611 -3.6138 0.8990 48 1 2.8825 -3.5965 -0.8806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:15 Heat of formation + Delta-G solvation = 134.729801 kcal Electronic energy + Delta-G solvation = -27189.696355 eV Core-core repulsion = 23668.630371 eV Total energy + Delta-G solvation = -3521.065984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.11779 -38.40395 -37.84812 -37.34330 -34.05813 -32.82841 -32.09816 -30.32944 -29.76509 -26.50295 -24.99328 -24.44396 -23.66570 -22.93095 -22.61783 -22.11226 -21.58228 -20.17005 -19.95063 -18.65764 -17.74980 -16.51911 -16.32414 -15.97844 -15.27495 -15.07550 -14.71833 -14.66245 -14.25774 -14.21219 -13.66487 -13.29857 -12.90910 -12.63925 -12.43892 -12.31924 -12.05236 -11.84082 -11.80146 -11.68730 -11.34751 -11.26337 -11.16332 -11.13880 -10.93202 -10.83486 -10.72133 -10.68914 -10.16338 -10.12241 -10.03569 -9.86297 -9.49922 -9.17187 -8.76364 -8.73114 -8.30485 -7.77114 -5.96711 -4.03248 1.75578 2.27002 2.91257 2.99962 3.32740 3.37805 3.39862 3.65616 3.95001 4.15038 4.17570 4.27310 4.39991 4.51511 4.54349 4.60673 4.67168 4.78640 5.01904 5.07858 5.23489 5.33252 5.34920 5.38765 5.47313 5.50261 5.52625 5.62972 5.67613 5.71405 5.88860 5.90836 5.96135 6.00612 6.16803 6.25115 6.32309 6.45069 6.64622 6.69758 6.89100 6.92366 7.18268 7.33463 7.56248 7.68465 7.76461 8.07906 8.16814 8.46691 8.90726 9.00505 9.61019 11.09359 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.003028 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.833416 B = 9246.323112 C = 9530.683459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.056 3.944 10 H 0.036 0.964 11 C -0.109 4.109 12 C -0.117 4.117 13 C 0.066 3.934 14 N -0.528 5.528 15 C 0.136 3.864 16 C 0.203 3.797 17 N -0.277 5.277 18 N -0.294 5.294 19 C 0.201 3.799 20 C -0.081 4.081 21 C -0.150 4.150 22 C -0.160 4.160 23 N -0.444 5.444 24 C 0.049 3.951 25 C -0.166 4.166 26 C -0.163 4.163 27 C 0.070 3.930 28 H 0.260 0.740 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.024 0.976 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.114 0.886 47 H 0.064 0.936 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 -22.668 -7.808 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.054 0.946 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.061 4.061 14 N -0.253 5.253 15 C 0.005 3.995 16 C -0.064 4.064 17 N -0.116 5.116 18 N -0.134 5.134 19 C -0.065 4.065 20 C -0.102 4.102 21 C -0.188 4.188 22 C -0.198 4.198 23 N -0.135 5.135 24 C -0.056 4.056 25 C -0.203 4.203 26 C -0.201 4.201 27 C -0.056 4.056 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.138 0.862 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.155 0.845 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.132 0.868 47 H 0.083 0.917 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.710 -22.440 -5.893 23.264 hybrid contribution 1.084 0.979 -2.189 2.631 sum 2.794 -21.461 -8.082 23.102 Atomic orbital electron populations 1.69884 1.05855 1.26466 1.50439 1.24931 0.94820 0.98950 0.95100 0.86683 0.79603 0.83287 0.78538 1.20425 1.21337 1.20251 1.21082 0.92779 0.90575 1.50993 0.92821 1.18661 0.92595 0.90101 0.94940 0.94559 1.21653 1.00055 0.94533 0.98505 1.21672 0.97140 0.96463 1.00209 1.22051 0.95722 0.98527 0.89847 1.61867 1.23811 1.01524 1.38104 1.20485 0.92509 0.85362 1.01124 1.24796 1.01613 0.93695 0.86313 1.74315 1.12137 1.06749 1.18409 1.74220 1.17125 1.06503 1.15534 1.23591 1.00147 0.94533 0.88269 1.20007 1.04832 0.86259 0.99085 1.23019 0.94261 1.01253 1.00242 1.23047 0.98684 0.94774 1.03333 1.45408 1.41954 1.18565 1.07554 1.21966 0.97638 1.07361 0.78659 1.23428 0.94033 0.99121 1.03747 1.23383 1.01713 0.91871 1.03146 1.22364 0.96519 0.87631 0.99090 0.92976 0.89039 0.95121 0.92073 0.93595 0.95745 0.93350 0.87897 0.93082 0.86156 0.87155 0.87965 0.88019 0.88325 0.84484 0.86506 0.87485 0.87772 0.86792 0.91724 0.96004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 11.36 55.43 0.63 -24.76 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.00 8.56 -34.44 -0.29 -14.29 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 10 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 11 C -0.11 -2.56 5.03 -26.61 -0.13 -2.70 16 12 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 13 C 0.07 1.15 5.30 -3.84 -0.02 1.13 16 14 N -0.53 -9.85 4.60 -236.12 -1.09 -10.94 16 15 C 0.14 2.10 5.35 -4.98 -0.03 2.07 16 16 C 0.20 3.28 6.60 -154.98 -1.02 2.25 16 17 N -0.28 -5.28 12.21 32.80 0.40 -4.87 16 18 N -0.29 -5.13 11.83 32.79 0.39 -4.74 16 19 C 0.20 2.77 7.53 -154.99 -1.17 1.60 16 20 C -0.08 -0.78 6.00 -91.77 -0.55 -1.33 16 21 C -0.15 -1.30 10.15 -26.73 -0.27 -1.57 16 22 C -0.16 -1.24 10.23 -26.73 -0.27 -1.51 16 23 N -0.44 -5.82 2.81 -103.62 -0.29 -6.11 16 24 C 0.05 0.44 5.35 -67.93 -0.36 0.08 16 25 C -0.17 -1.25 8.81 -26.74 -0.24 -1.48 16 26 C -0.16 -1.03 10.43 -26.73 -0.28 -1.31 16 27 C 0.07 1.46 4.67 -3.84 -0.02 1.44 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.79 6.04 -51.93 -0.31 0.47 16 35 H 0.10 1.57 7.87 -51.93 -0.41 1.16 16 36 H 0.05 0.67 5.24 -51.93 -0.27 0.39 16 37 H 0.12 0.92 8.13 -51.93 -0.42 0.49 16 38 H 0.11 1.17 7.92 -51.93 -0.41 0.75 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.14 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.11 0.91 7.11 -51.93 -0.37 0.54 16 45 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 46 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 1.33 7.96 -51.93 -0.41 0.92 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -32.11 379.46 -12.34 -44.45 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.96 Total: 0.31 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -5.12 Total: -15.24 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.04 Total: -51.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.11 -12.34 -44.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.180 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds