Wall clock time and date at job start Tue Mar 31 2020 10:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48505 * 109.46954 * 239.99625 * 3 2 1 5 5 H 1.48501 * 109.47377 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47477 * 119.99558 * 3 2 1 7 7 C 1.37872 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99670 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00101 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.52938 * 300.09830 * 9 7 2 11 11 C 1.53120 * 109.50322 * 60.19037 * 9 7 2 12 12 C 1.53120 * 109.15900 * 177.59540 * 11 9 7 13 13 C 1.53032 * 109.27975 * 302.34989 * 12 11 9 14 14 N 1.46845 * 109.52517 * 59.17651 * 13 12 11 15 15 C 1.46898 * 111.00200 * 174.15908 * 14 13 12 16 16 C 1.50703 * 109.47252 * 288.16655 * 15 14 13 17 17 N 1.30527 * 126.34236 * 277.51440 * 16 15 14 18 18 N 1.28595 * 109.66833 * 180.29973 * 17 16 15 19 19 C 1.30520 * 109.67406 * 359.71836 * 18 17 16 20 20 C 1.50696 * 126.34572 * 179.97438 * 19 18 17 21 21 C 1.53004 * 117.49973 * 8.66613 * 20 19 18 22 22 C 1.52997 * 60.00305 * 252.50901 * 21 20 19 23 23 N 1.35488 * 126.34998 * 97.35060 * 16 15 14 24 24 C 1.46501 * 126.97614 * 359.96992 * 23 16 15 25 25 C 1.52994 * 117.51724 * 48.40322 * 24 23 16 26 26 C 1.52997 * 60.00254 * 107.47904 * 25 24 23 27 27 C 1.46843 * 111.20158 * 298.25908 * 14 13 12 28 28 H 0.97007 * 120.00142 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.52392 * 297.50469 * 11 9 7 30 30 H 1.08998 * 109.51848 * 57.62818 * 11 9 7 31 31 H 1.09004 * 109.50101 * 62.29212 * 12 11 9 32 32 H 1.08998 * 109.50163 * 182.36873 * 12 11 9 33 33 H 1.08999 * 109.46354 * 299.16353 * 13 12 11 34 34 H 1.08996 * 109.46084 * 179.19345 * 13 12 11 35 35 H 1.08999 * 109.47397 * 168.16519 * 15 14 13 36 36 H 1.09001 * 109.47251 * 48.16058 * 15 14 13 37 37 H 1.08999 * 115.55386 * 154.37518 * 20 19 18 38 38 H 1.09000 * 117.49821 * 0.02562 * 21 20 19 39 39 H 1.09004 * 117.49833 * 145.01852 * 21 20 19 40 40 H 1.09005 * 117.50031 * 252.51098 * 22 21 20 41 41 H 1.08994 * 117.52134 * 107.47877 * 22 21 20 42 42 H 1.09003 * 115.55169 * 262.69647 * 24 23 16 43 43 H 1.09006 * 117.49839 * 214.96575 * 25 24 23 44 44 H 1.08994 * 117.50281 * 359.97438 * 25 24 23 45 45 H 1.09008 * 117.49948 * 252.51030 * 26 25 24 46 46 H 1.08997 * 117.50533 * 107.49305 * 26 25 24 47 47 H 1.08998 * 109.46675 * 181.75633 * 27 14 13 48 48 H 1.09002 * 109.46321 * 301.72440 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6224 -2.5570 0.8891 11 6 0.3746 -2.5835 -1.2521 12 6 -0.3409 -3.9370 -1.2747 13 6 0.6991 -5.0590 -1.2371 14 7 1.5114 -4.9347 -0.0201 15 6 2.4285 -6.0738 0.1194 16 6 1.6449 -7.3076 0.4866 17 7 1.2493 -7.6448 1.6839 18 7 0.6119 -8.7604 1.6310 19 6 0.5667 -9.1825 0.3968 20 6 -0.0877 -10.4495 -0.0904 21 6 -0.9408 -11.2334 0.9090 22 6 0.4247 -11.7737 0.4798 23 7 1.2178 -8.2708 -0.3652 24 6 1.4235 -8.3195 -1.8148 25 6 2.8404 -8.0724 -2.3364 26 6 2.2470 -9.4821 -2.3728 27 6 2.2450 -3.6628 0.0011 28 1 -0.4851 0.8401 -0.0004 29 1 -0.3633 -1.7815 -1.2350 30 1 0.9986 -2.4853 -2.1405 31 1 -0.9946 -4.0175 -0.4062 32 1 -0.9339 -4.0200 -2.1855 33 1 1.3438 -4.9861 -2.1130 34 1 0.1924 -6.0240 -1.2386 35 1 3.1571 -5.8600 0.9013 36 1 2.9471 -6.2405 -0.8248 37 1 -0.4113 -10.4414 -1.1312 38 1 -1.0291 -10.8324 1.9187 39 1 -1.8261 -11.7410 0.5257 40 1 0.4379 -12.6368 -0.1859 41 1 1.2354 -11.7284 1.2068 42 1 0.5936 -7.9546 -2.4200 43 1 2.9428 -7.5448 -3.2848 44 1 3.6198 -7.8730 -1.6010 45 1 2.6360 -10.2105 -1.6611 46 1 1.9589 -9.8820 -3.3449 47 1 2.8611 -3.6138 0.8990 48 1 2.8825 -3.5965 -0.8806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595620257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:14 Heat of formation + Delta-G solvation = 116.923694 kcal Electronic energy + Delta-G solvation = -27190.468486 eV Core-core repulsion = 23668.630371 eV Total energy + Delta-G solvation = -3521.838115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.21521 -39.90561 -38.61468 -38.08198 -35.80638 -33.98289 -33.67627 -31.83486 -31.38051 -27.80522 -26.95129 -25.38538 -24.59777 -23.84860 -23.41803 -23.23785 -23.10220 -21.23654 -20.91283 -20.39780 -18.67702 -18.32517 -17.40365 -16.84430 -16.75981 -16.25769 -16.03265 -15.83273 -15.54772 -15.36031 -15.04008 -14.52536 -14.42709 -14.24554 -13.80223 -13.60297 -13.33678 -12.95345 -12.81778 -12.61446 -12.58271 -12.54265 -12.49660 -12.37643 -12.21676 -11.95519 -11.90756 -11.80859 -11.74903 -11.49884 -11.41436 -11.10721 -11.00594 -10.89711 -10.69399 -10.38478 -9.93257 -9.21378 -8.07133 -6.21682 0.70557 1.35829 1.42579 1.44427 1.51652 1.74584 2.41783 2.43732 2.93208 3.03592 3.18611 3.20238 3.26733 3.53715 3.64462 3.77257 3.91599 3.92574 4.00526 4.08610 4.12860 4.19926 4.31351 4.45326 4.53577 4.60113 4.62629 4.67428 4.75290 4.78789 4.81451 4.84811 4.88474 4.92330 4.94510 5.02151 5.06719 5.08462 5.14375 5.20729 5.29130 5.33876 5.48278 5.63586 5.89080 5.96182 6.10283 6.18614 6.20264 6.43021 6.91183 7.46508 7.74761 8.97649 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.003028 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.833416 B = 9246.323112 C = 9530.683459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.053 3.947 10 H -0.013 1.013 11 C -0.100 4.100 12 C -0.111 4.111 13 C 0.077 3.923 14 N -0.550 5.550 15 C 0.143 3.857 16 C 0.195 3.805 17 N -0.329 5.329 18 N -0.340 5.340 19 C 0.211 3.789 20 C -0.093 4.093 21 C -0.154 4.154 22 C -0.140 4.140 23 N -0.437 5.437 24 C 0.018 3.982 25 C -0.168 4.168 26 C -0.135 4.135 27 C 0.086 3.914 28 H 0.259 0.741 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.149 0.851 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.146 0.854 47 H 0.059 0.941 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 -24.887 -10.924 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.075 0.925 9 C 0.034 3.966 10 H 0.005 0.995 11 C -0.138 4.138 12 C -0.149 4.149 13 C -0.051 4.051 14 N -0.275 5.275 15 C 0.013 3.987 16 C -0.074 4.074 17 N -0.168 5.168 18 N -0.180 5.180 19 C -0.056 4.056 20 C -0.113 4.113 21 C -0.192 4.192 22 C -0.178 4.178 23 N -0.126 5.126 24 C -0.085 4.085 25 C -0.205 4.205 26 C -0.172 4.172 27 C -0.041 4.041 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.167 0.833 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.098 0.902 42 H 0.167 0.833 43 H 0.154 0.846 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.164 0.836 47 H 0.077 0.923 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.721 -24.680 -9.024 26.418 hybrid contribution 0.740 1.593 -1.200 2.127 sum 3.461 -23.087 -10.224 25.486 Atomic orbital electron populations 1.70051 1.07331 1.27104 1.51247 1.25750 0.95615 1.02462 0.94806 0.85653 0.78354 0.78982 0.78900 1.19206 1.21234 1.19841 1.21484 0.93158 0.91853 1.50753 0.92487 1.18575 0.92988 0.91460 0.93558 0.99494 1.21429 0.99116 0.95615 0.97677 1.21578 0.97511 0.95412 1.00362 1.21958 0.95159 0.97867 0.90093 1.61685 1.24846 1.01606 1.39399 1.20456 0.91816 0.83934 1.02492 1.24723 1.01897 0.94394 0.86419 1.74186 1.13810 1.08134 1.20717 1.74112 1.18896 1.06870 1.18091 1.24356 0.98498 0.95263 0.87490 1.20335 1.05563 0.84990 1.00460 1.23072 0.95975 1.01360 0.98821 1.23104 0.97278 0.94625 1.02799 1.45556 1.40811 1.17264 1.08991 1.22416 0.99101 1.10707 0.76302 1.23540 0.92323 1.00576 1.04039 1.23487 0.99008 0.90831 1.03915 1.21998 0.95312 0.87388 0.99394 0.93148 0.92583 0.94738 0.94712 0.90871 0.93453 0.91872 0.88345 0.89955 0.83314 0.89972 0.85203 0.84502 0.90157 0.83325 0.84555 0.88724 0.88349 0.83649 0.92293 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.29 11.36 21.45 0.24 -54.05 16 2 C 0.01 0.69 5.30 84.65 0.45 1.14 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.53 -29.59 8.56 25.60 0.22 -29.37 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 10 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 11 C -0.10 -4.78 5.03 30.67 0.15 -4.63 16 12 C -0.11 -4.35 6.09 30.65 0.19 -4.17 16 13 C 0.08 2.53 5.30 86.32 0.46 2.99 16 14 N -0.55 -20.40 4.60 -900.96 -4.15 -24.54 16 15 C 0.14 4.31 5.35 85.56 0.46 4.77 16 16 C 0.19 6.25 6.60 137.98 0.91 7.17 16 17 N -0.33 -13.02 12.21 -50.15 -0.61 -13.63 16 18 N -0.34 -12.25 11.83 -50.16 -0.59 -12.84 16 19 C 0.21 5.67 7.53 137.98 1.04 6.71 16 20 C -0.09 -1.55 6.00 -11.54 -0.07 -1.62 16 21 C -0.15 -2.41 10.15 30.59 0.31 -2.10 16 22 C -0.14 -1.80 10.23 30.60 0.31 -1.49 16 23 N -0.44 -10.79 2.81 -481.75 -1.35 -12.14 16 24 C 0.02 0.26 5.35 44.99 0.24 0.51 16 25 C -0.17 -1.90 8.81 30.59 0.27 -1.63 16 26 C -0.14 -1.12 10.43 30.59 0.32 -0.80 16 27 C 0.09 3.59 4.67 86.33 0.40 3.99 16 28 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 29 H 0.06 3.07 6.17 -2.39 -0.01 3.05 16 30 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.92 6.04 -2.39 -0.01 1.91 16 35 H 0.10 3.02 7.87 -2.39 -0.02 3.00 16 36 H 0.08 1.95 5.24 -2.39 -0.01 1.94 16 37 H 0.15 1.63 8.13 -2.39 -0.02 1.62 16 38 H 0.08 1.77 7.92 -2.39 -0.02 1.76 16 39 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.14 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.15 1.91 7.93 -2.39 -0.02 1.89 16 43 H 0.14 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.09 1.34 7.11 -2.39 -0.02 1.33 16 45 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.06 2.48 7.96 -2.39 -0.02 2.46 16 48 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.18 379.46 2.14 -73.04 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.94 Total: 14.05 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 5.63 Total: -15.81 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -6.46 Total: -117.20 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -75.18 2.14 -73.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.966 kcal (2) G-P(sol) polarization free energy of solvation -75.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds