Wall clock time and date at job start Tue Mar 31 2020 10:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00372 * 2 1 4 4 H 1.48495 * 109.47688 * 240.00362 * 3 2 1 5 5 H 1.48508 * 109.46716 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47196 * 120.00125 * 3 2 1 7 7 C 1.37885 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99590 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50044 * 59.92982 * 9 7 2 11 11 C 1.53113 * 109.50629 * 299.80724 * 9 7 2 12 12 C 1.53121 * 109.16166 * 182.40523 * 11 9 7 13 13 C 1.53039 * 109.27471 * 57.65545 * 12 11 9 14 14 N 1.46844 * 109.52290 * 300.81878 * 13 12 11 15 15 C 1.46896 * 111.00057 * 185.84366 * 14 13 12 16 16 C 1.50697 * 109.47342 * 45.79121 * 15 14 13 17 17 N 1.30528 * 126.34495 * 269.94512 * 16 15 14 18 18 N 1.28601 * 109.67091 * 179.72566 * 17 16 15 19 19 C 1.30521 * 109.67114 * 0.45195 * 18 17 16 20 20 C 1.50698 * 126.34302 * 179.82487 * 19 18 17 21 21 C 1.53003 * 117.52225 * 350.96907 * 20 19 18 22 22 C 1.53005 * 117.49995 * 59.60061 * 20 19 18 23 23 N 1.35494 * 107.31120 * 359.55603 * 19 18 17 24 24 C 1.46498 * 126.98367 * 180.26535 * 23 19 18 25 25 C 1.53000 * 117.50090 * 131.94551 * 24 23 19 26 26 C 1.52999 * 117.49691 * 63.28428 * 24 23 19 27 27 C 1.46843 * 111.19948 * 61.74510 * 14 13 12 28 28 H 0.97004 * 119.99901 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.52380 * 302.30903 * 11 9 7 30 30 H 1.08996 * 109.52243 * 62.49830 * 11 9 7 31 31 H 1.09002 * 109.50316 * 177.59201 * 12 11 9 32 32 H 1.08995 * 109.50014 * 297.71584 * 12 11 9 33 33 H 1.09000 * 109.45823 * 180.80695 * 13 12 11 34 34 H 1.08996 * 109.46705 * 60.84005 * 13 12 11 35 35 H 1.09006 * 109.47388 * 285.79096 * 15 14 13 36 36 H 1.08998 * 109.47421 * 165.78887 * 15 14 13 37 37 H 1.09003 * 115.55135 * 205.26450 * 20 19 18 38 38 H 1.08992 * 117.49803 * 214.97238 * 21 20 19 39 39 H 1.09004 * 117.49191 * 359.97438 * 21 20 19 40 40 H 1.08995 * 117.49591 * 359.97432 * 22 20 19 41 41 H 1.09005 * 117.50006 * 144.97650 * 22 20 19 42 42 H 1.09000 * 115.54562 * 277.61431 * 24 23 19 43 43 H 1.09002 * 117.49772 * 359.97438 * 25 24 23 44 44 H 1.08992 * 117.49944 * 145.01887 * 25 24 23 45 45 H 1.09001 * 117.49313 * 214.97867 * 26 24 23 46 46 H 1.08994 * 117.50359 * 359.97429 * 26 24 23 47 47 H 1.09006 * 109.46298 * 58.27087 * 27 14 13 48 48 H 1.08996 * 109.46722 * 178.23860 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5566 -0.8895 11 6 0.3745 -2.5835 1.2521 12 6 -0.3411 -3.9370 1.2746 13 6 0.6989 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0201 15 6 2.4282 -6.0739 -0.1194 16 6 1.6824 -7.3552 0.1508 17 7 1.5455 -7.9410 1.3092 18 7 0.8447 -9.0107 1.1731 19 6 0.5108 -9.1609 -0.0797 20 6 -0.3060 -10.2879 -0.6574 21 6 -0.6199 -11.4742 0.2565 22 6 -1.7238 -10.4824 -0.1162 23 7 1.0297 -8.1126 -0.7637 24 6 0.9094 -7.8511 -2.2001 25 6 0.4976 -6.4416 -2.6296 26 6 -0.4933 -7.6013 -2.7576 27 6 2.2448 -3.6629 -0.0011 28 1 -0.4850 0.8401 0.0004 29 1 0.9986 -2.4866 2.1405 30 1 -0.3634 -1.7815 1.2350 31 1 -0.9336 -4.0202 2.1858 32 1 -0.9947 -4.0174 0.4061 33 1 0.1922 -6.0240 1.2386 34 1 1.3436 -4.9862 2.1130 35 1 3.2456 -5.9718 0.5945 36 1 2.8307 -6.0945 -1.1321 37 1 -0.1375 -10.4972 -1.7138 38 1 -0.6579 -12.4638 -0.1986 39 1 -0.2352 -11.4397 1.2758 40 1 -2.0656 -9.7955 0.6580 41 1 -2.4881 -10.8194 -0.8165 42 1 1.6161 -8.3847 -2.8357 43 1 0.3157 -5.7089 -1.8433 44 1 0.9330 -6.0479 -3.5480 45 1 -0.7093 -7.9701 -3.7603 46 1 -1.3267 -7.6319 -2.0559 47 1 2.8823 -3.5966 0.8806 48 1 2.8609 -3.6139 -0.8989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:17 Heat of formation + Delta-G solvation = 135.872823 kcal Electronic energy + Delta-G solvation = -27473.602602 eV Core-core repulsion = 23952.586183 eV Total energy + Delta-G solvation = -3521.016419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.15271 -38.32601 -37.66006 -37.30606 -34.08455 -32.79381 -32.02557 -30.42248 -29.62507 -26.45034 -24.99504 -24.43958 -23.54758 -22.70003 -22.46461 -22.10134 -21.52672 -20.02433 -19.92440 -18.58829 -17.60457 -16.63284 -16.17436 -15.92500 -15.20120 -15.08915 -14.81505 -14.46307 -14.23093 -13.96111 -13.44274 -13.23998 -12.95527 -12.62306 -12.44503 -12.06978 -11.94475 -11.77091 -11.65409 -11.51717 -11.42210 -11.23985 -11.11788 -10.94139 -10.91234 -10.81163 -10.71450 -10.67502 -10.13523 -10.08431 -9.97386 -9.84876 -9.49541 -9.10101 -8.82508 -8.73518 -8.31615 -7.79184 -5.99215 -4.05553 1.74901 2.35237 2.84460 3.28775 3.31210 3.36260 3.38558 3.67658 4.03359 4.23329 4.40379 4.45756 4.53118 4.54029 4.58335 4.67735 4.75740 4.79950 5.08968 5.31105 5.35808 5.39947 5.45731 5.52418 5.58946 5.66852 5.75568 5.80530 5.83675 5.91777 5.95777 6.03134 6.08812 6.19132 6.21351 6.31232 6.37301 6.51204 6.71903 6.73713 6.90359 6.92011 7.18536 7.33916 7.56241 7.66658 7.75137 8.04247 8.14929 8.45059 8.83798 8.98051 9.58899 11.06677 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.003213 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.848645 B = 8712.314936 C = 8906.604785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.059 3.941 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.115 4.115 13 C 0.064 3.936 14 N -0.531 5.531 15 C 0.136 3.864 16 C 0.198 3.802 17 N -0.293 5.293 18 N -0.295 5.295 19 C 0.202 3.798 20 C -0.081 4.081 21 C -0.152 4.152 22 C -0.158 4.158 23 N -0.433 5.433 24 C 0.037 3.963 25 C -0.157 4.157 26 C -0.167 4.167 27 C 0.067 3.933 28 H 0.260 0.740 29 H 0.031 0.969 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.025 0.975 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 -19.501 -6.476 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.040 3.960 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.153 4.153 13 C -0.064 4.064 14 N -0.257 5.257 15 C 0.006 3.994 16 C -0.069 4.069 17 N -0.134 5.134 18 N -0.135 5.135 19 C -0.065 4.065 20 C -0.102 4.102 21 C -0.189 4.189 22 C -0.197 4.197 23 N -0.123 5.123 24 C -0.067 4.067 25 C -0.194 4.194 26 C -0.205 4.205 27 C -0.059 4.059 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.120 0.880 47 H 0.043 0.957 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.008 -19.620 -5.392 20.447 hybrid contribution 1.013 1.121 -0.704 1.667 sum -0.995 -18.499 -6.096 19.503 Atomic orbital electron populations 1.69879 1.05840 1.26463 1.50456 1.24923 0.94812 0.98928 0.95077 0.86695 0.79621 0.83306 0.78562 1.20319 1.21346 1.20363 1.21093 0.92800 0.90602 1.50993 0.92841 1.18629 0.92474 0.90067 0.94810 0.94798 1.21663 1.00045 0.94597 0.98574 1.21669 0.97135 0.96487 1.00006 1.22074 0.95621 0.98623 0.90113 1.62242 1.23300 1.01542 1.38596 1.20497 0.93012 0.83644 1.02290 1.24680 0.99421 0.97296 0.85503 1.74329 1.15713 1.03583 1.19737 1.74170 1.13199 1.12581 1.13581 1.23594 1.01388 0.92128 0.89355 1.20006 0.97199 0.94285 0.98670 1.23012 1.01685 0.93250 1.00993 1.23056 0.90388 1.02813 1.03404 1.45346 1.39567 1.18821 1.08528 1.21987 1.01605 1.04705 0.78433 1.23753 1.00037 0.90647 1.05003 1.23337 0.91762 1.02909 1.02496 1.22378 0.96624 0.87723 0.99214 0.92990 0.95016 0.89133 0.93565 0.92529 0.92511 0.95084 0.91752 0.89195 0.86110 0.88037 0.87289 0.88212 0.87922 0.84919 0.84389 0.87059 0.87289 0.88039 0.95673 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 11.36 55.43 0.63 -24.24 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -13.72 8.56 -34.44 -0.29 -14.02 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.21 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.11 -2.60 5.03 -26.61 -0.13 -2.74 16 12 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 13 C 0.06 1.20 4.96 -3.83 -0.02 1.18 16 14 N -0.53 -9.28 3.23 -236.12 -0.76 -10.05 16 15 C 0.14 2.06 4.88 -4.98 -0.02 2.03 16 16 C 0.20 3.12 5.69 -154.98 -0.88 2.24 16 17 N -0.29 -5.29 11.30 32.80 0.37 -4.92 16 18 N -0.30 -4.99 11.84 32.80 0.39 -4.60 16 19 C 0.20 2.78 7.53 -154.99 -1.17 1.61 16 20 C -0.08 -0.79 6.00 -91.77 -0.55 -1.34 16 21 C -0.15 -1.30 10.15 -26.73 -0.27 -1.57 16 22 C -0.16 -1.35 10.23 -26.73 -0.27 -1.63 16 23 N -0.43 -5.80 3.03 -103.62 -0.31 -6.11 16 24 C 0.04 0.37 6.08 -67.93 -0.41 -0.04 16 25 C -0.16 -1.68 9.35 -26.69 -0.25 -1.93 16 26 C -0.17 -1.48 10.44 -26.69 -0.28 -1.75 16 27 C 0.07 1.34 4.65 -3.84 -0.02 1.32 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.09 5.97 -51.93 -0.31 0.78 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 36 H 0.09 1.18 7.64 -51.93 -0.40 0.79 16 37 H 0.12 0.93 8.13 -51.93 -0.42 0.51 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.11 1.12 7.92 -51.93 -0.41 0.71 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.14 1.98 6.28 -51.93 -0.33 1.65 16 44 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -30.08 379.04 -12.10 -42.18 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.07 Total: 2.37 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -5.04 Total: -16.25 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.31 Total: -49.92 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.08 -12.10 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.056 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds