Wall clock time and date at job start Tue Mar 31 2020 10:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00372 * 2 1 4 4 H 1.48495 * 109.47688 * 240.00362 * 3 2 1 5 5 H 1.48508 * 109.46716 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47196 * 120.00125 * 3 2 1 7 7 C 1.37885 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99590 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50044 * 59.92982 * 9 7 2 11 11 C 1.53113 * 109.50629 * 299.80724 * 9 7 2 12 12 C 1.53121 * 109.16166 * 182.40523 * 11 9 7 13 13 C 1.53039 * 109.27471 * 57.65545 * 12 11 9 14 14 N 1.46844 * 109.52290 * 300.81878 * 13 12 11 15 15 C 1.46896 * 111.00057 * 185.84366 * 14 13 12 16 16 C 1.50697 * 109.47342 * 45.79121 * 15 14 13 17 17 N 1.30528 * 126.34495 * 269.94512 * 16 15 14 18 18 N 1.28601 * 109.67091 * 179.72566 * 17 16 15 19 19 C 1.30521 * 109.67114 * 0.45195 * 18 17 16 20 20 C 1.50698 * 126.34302 * 179.82487 * 19 18 17 21 21 C 1.53003 * 117.52225 * 350.96907 * 20 19 18 22 22 C 1.53005 * 117.49995 * 59.60061 * 20 19 18 23 23 N 1.35494 * 107.31120 * 359.55603 * 19 18 17 24 24 C 1.46498 * 126.98367 * 180.26535 * 23 19 18 25 25 C 1.53000 * 117.50090 * 131.94551 * 24 23 19 26 26 C 1.52999 * 117.49691 * 63.28428 * 24 23 19 27 27 C 1.46843 * 111.19948 * 61.74510 * 14 13 12 28 28 H 0.97004 * 119.99901 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.52380 * 302.30903 * 11 9 7 30 30 H 1.08996 * 109.52243 * 62.49830 * 11 9 7 31 31 H 1.09002 * 109.50316 * 177.59201 * 12 11 9 32 32 H 1.08995 * 109.50014 * 297.71584 * 12 11 9 33 33 H 1.09000 * 109.45823 * 180.80695 * 13 12 11 34 34 H 1.08996 * 109.46705 * 60.84005 * 13 12 11 35 35 H 1.09006 * 109.47388 * 285.79096 * 15 14 13 36 36 H 1.08998 * 109.47421 * 165.78887 * 15 14 13 37 37 H 1.09003 * 115.55135 * 205.26450 * 20 19 18 38 38 H 1.08992 * 117.49803 * 214.97238 * 21 20 19 39 39 H 1.09004 * 117.49191 * 359.97438 * 21 20 19 40 40 H 1.08995 * 117.49591 * 359.97432 * 22 20 19 41 41 H 1.09005 * 117.50006 * 144.97650 * 22 20 19 42 42 H 1.09000 * 115.54562 * 277.61431 * 24 23 19 43 43 H 1.09002 * 117.49772 * 359.97438 * 25 24 23 44 44 H 1.08992 * 117.49944 * 145.01887 * 25 24 23 45 45 H 1.09001 * 117.49313 * 214.97867 * 26 24 23 46 46 H 1.08994 * 117.50359 * 359.97429 * 26 24 23 47 47 H 1.09006 * 109.46298 * 58.27087 * 27 14 13 48 48 H 1.08996 * 109.46722 * 178.23860 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5566 -0.8895 11 6 0.3745 -2.5835 1.2521 12 6 -0.3411 -3.9370 1.2746 13 6 0.6989 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0201 15 6 2.4282 -6.0739 -0.1194 16 6 1.6824 -7.3552 0.1508 17 7 1.5455 -7.9410 1.3092 18 7 0.8447 -9.0107 1.1731 19 6 0.5108 -9.1609 -0.0797 20 6 -0.3060 -10.2879 -0.6574 21 6 -0.6199 -11.4742 0.2565 22 6 -1.7238 -10.4824 -0.1162 23 7 1.0297 -8.1126 -0.7637 24 6 0.9094 -7.8511 -2.2001 25 6 0.4976 -6.4416 -2.6296 26 6 -0.4933 -7.6013 -2.7576 27 6 2.2448 -3.6629 -0.0011 28 1 -0.4850 0.8401 0.0004 29 1 0.9986 -2.4866 2.1405 30 1 -0.3634 -1.7815 1.2350 31 1 -0.9336 -4.0202 2.1858 32 1 -0.9947 -4.0174 0.4061 33 1 0.1922 -6.0240 1.2386 34 1 1.3436 -4.9862 2.1130 35 1 3.2456 -5.9718 0.5945 36 1 2.8307 -6.0945 -1.1321 37 1 -0.1375 -10.4972 -1.7138 38 1 -0.6579 -12.4638 -0.1986 39 1 -0.2352 -11.4397 1.2758 40 1 -2.0656 -9.7955 0.6580 41 1 -2.4881 -10.8194 -0.8165 42 1 1.6161 -8.3847 -2.8357 43 1 0.3157 -5.7089 -1.8433 44 1 0.9330 -6.0479 -3.5480 45 1 -0.7093 -7.9701 -3.7603 46 1 -1.3267 -7.6319 -2.0559 47 1 2.8823 -3.5966 0.8806 48 1 2.8609 -3.6139 -0.8989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595620258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:17 Heat of formation + Delta-G solvation = 121.251011 kcal Electronic energy + Delta-G solvation = -27474.236652 eV Core-core repulsion = 23952.586183 eV Total energy + Delta-G solvation = -3521.650468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.26579 -39.90663 -38.51862 -38.07574 -35.82882 -34.00314 -33.63425 -31.95383 -31.22965 -27.79947 -26.93398 -25.45186 -24.52871 -23.77427 -23.36885 -23.19089 -23.12433 -21.12572 -20.96273 -20.33118 -18.50938 -18.45114 -17.48127 -16.81574 -16.67869 -16.35179 -16.10378 -15.71644 -15.46176 -15.25614 -14.97494 -14.71453 -14.32120 -14.13896 -13.71515 -13.64785 -13.36178 -13.00872 -12.81347 -12.69061 -12.58121 -12.48442 -12.43008 -12.37585 -12.21035 -11.98484 -11.85736 -11.76394 -11.74096 -11.48546 -11.40894 -11.11088 -10.97829 -10.85852 -10.68541 -10.37569 -9.96337 -9.27941 -8.06321 -6.19641 0.67769 1.38828 1.43874 1.44895 1.52036 1.68346 2.44498 2.50891 2.94663 2.98584 3.18891 3.21557 3.23631 3.66351 3.76189 3.79073 3.92795 4.00851 4.05338 4.08707 4.11191 4.18620 4.32467 4.45248 4.56288 4.60533 4.69020 4.75524 4.78403 4.80610 4.84521 4.87397 4.93336 4.94249 5.01045 5.06883 5.09816 5.13613 5.19410 5.28832 5.29791 5.33064 5.48321 5.64827 5.86442 5.95894 6.06445 6.10201 6.16776 6.43771 6.92362 7.48210 7.68201 8.98303 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.003213 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.848645 B = 8712.314936 C = 8906.604785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.060 3.940 10 H 0.006 0.994 11 C -0.102 4.102 12 C -0.105 4.105 13 C 0.078 3.922 14 N -0.523 5.523 15 C 0.141 3.859 16 C 0.189 3.811 17 N -0.331 5.331 18 N -0.336 5.336 19 C 0.212 3.788 20 C -0.092 4.092 21 C -0.146 4.146 22 C -0.150 4.150 23 N -0.431 5.431 24 C 0.032 3.968 25 C -0.172 4.172 26 C -0.147 4.147 27 C 0.081 3.919 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.062 0.938 36 H 0.115 0.885 37 H 0.151 0.849 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.145 0.855 46 H 0.085 0.915 47 H 0.018 0.982 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -21.307 -8.755 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.041 3.959 10 H 0.024 0.976 11 C -0.141 4.141 12 C -0.143 4.143 13 C -0.050 4.050 14 N -0.249 5.249 15 C 0.012 3.988 16 C -0.080 4.080 17 N -0.172 5.172 18 N -0.175 5.175 19 C -0.056 4.056 20 C -0.112 4.112 21 C -0.184 4.184 22 C -0.189 4.189 23 N -0.120 5.120 24 C -0.070 4.070 25 C -0.209 4.209 26 C -0.184 4.184 27 C -0.046 4.046 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.169 0.831 38 H 0.151 0.849 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.152 0.848 42 H 0.182 0.818 43 H 0.118 0.882 44 H 0.148 0.852 45 H 0.163 0.837 46 H 0.104 0.896 47 H 0.036 0.964 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.700 -21.437 -7.680 22.835 hybrid contribution 0.858 1.640 -0.001 1.851 sum -0.842 -19.797 -7.681 21.252 Atomic orbital electron populations 1.70022 1.07151 1.27066 1.51206 1.25681 0.95587 1.02199 0.94852 0.85718 0.78420 0.79333 0.78795 1.19348 1.21237 1.20041 1.21480 0.93115 0.91937 1.50726 0.92702 1.18519 0.92777 0.91087 0.93518 0.97594 1.21475 0.99225 0.95436 0.97936 1.21544 0.97278 0.95147 1.00361 1.21853 0.95148 0.97683 0.90293 1.62162 1.23600 1.01532 1.37586 1.20505 0.92210 0.82451 1.03658 1.24596 1.00055 0.97549 0.85771 1.74219 1.16942 1.04595 1.21394 1.74086 1.14681 1.13019 1.15735 1.24338 1.00042 0.92554 0.88648 1.20346 0.97313 0.93405 1.00145 1.23073 1.01055 0.94423 0.99821 1.23095 0.90525 1.02088 1.03161 1.45538 1.38646 1.18130 1.09686 1.22430 1.03373 1.04445 0.76781 1.23644 1.02098 0.90468 1.04722 1.23416 0.90403 1.00900 1.03690 1.22081 0.95478 0.87509 0.99542 0.93139 0.96171 0.92163 0.92478 0.92958 0.92594 0.96228 0.92000 0.86655 0.83097 0.84915 0.89676 0.90701 0.84823 0.81841 0.88178 0.85246 0.83722 0.89625 0.96391 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.52 11.36 21.45 0.24 -52.28 16 2 C 0.02 0.86 5.30 84.66 0.45 1.31 16 3 Si 0.95 43.15 29.54 68.60 2.03 45.17 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.53 -28.80 8.56 25.60 0.22 -28.58 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.06 2.94 2.26 -11.49 -0.03 2.92 16 10 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 11 C -0.10 -5.00 5.03 30.67 0.15 -4.84 16 12 C -0.11 -4.37 6.09 30.65 0.19 -4.18 16 13 C 0.08 3.01 4.96 86.33 0.43 3.44 16 14 N -0.52 -18.36 3.23 -900.95 -2.91 -21.27 16 15 C 0.14 4.19 4.88 85.56 0.42 4.61 16 16 C 0.19 5.88 5.69 137.97 0.79 6.67 16 17 N -0.33 -12.15 11.30 -50.15 -0.57 -12.72 16 18 N -0.34 -11.47 11.84 -50.15 -0.59 -12.07 16 19 C 0.21 5.60 7.53 137.98 1.04 6.64 16 20 C -0.09 -1.54 6.00 -11.54 -0.07 -1.61 16 21 C -0.15 -2.17 10.15 30.60 0.31 -1.86 16 22 C -0.15 -2.23 10.23 30.60 0.31 -1.91 16 23 N -0.43 -10.91 3.03 -481.74 -1.46 -12.37 16 24 C 0.03 0.55 6.08 44.99 0.27 0.82 16 25 C -0.17 -3.33 9.35 30.62 0.29 -3.04 16 26 C -0.15 -2.12 10.44 30.62 0.32 -1.80 16 27 C 0.08 3.25 4.65 86.33 0.40 3.65 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.06 3.31 6.16 -2.39 -0.01 3.29 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.20 5.97 -2.39 -0.01 2.18 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 35 H 0.06 1.89 8.08 -2.38 -0.02 1.87 16 36 H 0.12 2.82 7.64 -2.39 -0.02 2.80 16 37 H 0.15 1.63 8.13 -2.39 -0.02 1.61 16 38 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.71 7.92 -2.38 -0.02 1.69 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.10 2.82 6.28 -2.39 -0.01 2.80 16 44 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.08 2.84 8.12 -2.39 -0.02 2.82 16 Total: -1.00 -68.48 379.04 3.16 -65.31 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.94 Total: 17.99 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 5.49 Total: -17.77 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -5.29 Total: -110.71 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -68.48 3.16 -65.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.566 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds