Wall clock time and date at job start Tue Mar 31 2020 11:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.46948 * 2 1 4 4 N 1.31577 * 118.99305 * 269.97617 * 3 2 1 5 5 C 1.33428 * 120.89522 * 180.02562 * 4 3 2 6 6 C 1.43206 * 120.51922 * 179.97438 * 5 4 3 7 7 N 5.83664 * 105.61373 * 322.14580 * 2 1 3 8 8 C 1.39294 * 118.95723 * 359.73247 * 5 4 3 9 9 C 1.39659 * 118.18647 * 0.52635 * 8 5 4 10 10 N 1.38549 * 120.49666 * 179.74134 * 9 8 5 11 11 C 1.46501 * 119.99639 * 184.72648 * 10 9 8 12 12 C 1.50700 * 109.46855 * 279.60920 * 11 10 9 13 13 H 1.08002 * 120.00334 * 3.50946 * 12 11 10 14 14 C 1.37883 * 119.99945 * 183.50007 * 12 11 10 15 15 N 1.31513 * 119.99813 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00061 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47085 * 90.00193 * 16 14 12 18 18 H 1.48497 * 109.46955 * 209.99967 * 16 14 12 19 19 H 1.48496 * 109.47315 * 330.00145 * 16 14 12 20 20 C 1.46500 * 120.00206 * 4.72606 * 10 9 8 21 21 C 1.52997 * 109.47163 * 82.52294 * 20 10 9 22 22 C 1.53006 * 109.47041 * 70.07421 * 21 20 10 23 23 C 1.52995 * 109.46919 * 63.30281 * 22 21 20 24 24 C 1.53004 * 109.47129 * 190.07324 * 21 20 10 25 25 C 1.52998 * 109.47178 * 175.47897 * 24 21 20 26 26 N 1.31827 * 118.99603 * 89.99707 * 3 2 1 27 27 H 1.09001 * 109.47016 * 300.00415 * 1 2 3 28 28 H 1.08998 * 109.46954 * 60.00030 * 1 2 3 29 29 H 1.08995 * 109.46609 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47367 * 240.00112 * 2 1 3 31 31 H 1.09002 * 109.46852 * 119.99480 * 2 1 3 32 32 H 1.08003 * 120.90560 * 180.27256 * 8 5 4 33 33 H 1.08993 * 109.47286 * 39.61107 * 11 10 9 34 34 H 1.09000 * 109.46710 * 159.61756 * 11 10 9 35 35 H 0.96994 * 119.99850 * 179.97438 * 15 14 12 36 36 H 1.09007 * 109.46807 * 322.52479 * 20 10 9 37 37 H 1.08994 * 109.47302 * 202.52816 * 20 10 9 38 38 H 1.09001 * 109.47628 * 310.07422 * 21 20 10 39 39 H 1.08998 * 109.46899 * 183.30115 * 22 21 20 40 40 H 1.08993 * 109.46966 * 303.30540 * 22 21 20 41 41 H 1.09000 * 109.47059 * 65.02226 * 23 22 21 42 42 H 1.08994 * 109.47252 * 185.01860 * 23 22 21 43 43 H 1.08995 * 109.47610 * 305.02512 * 23 22 21 44 44 H 1.08992 * 109.47178 * 295.47907 * 24 21 20 45 45 H 1.08997 * 109.47084 * 55.48228 * 24 21 20 46 46 H 1.09001 * 109.47049 * 65.21504 * 25 24 21 47 47 H 1.08997 * 109.47615 * 185.22363 * 25 24 21 48 48 H 1.09004 * 109.47389 * 305.22116 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2454 2.0220 -1.1509 5 6 2.6904 3.2791 -1.1952 6 6 2.9200 3.9254 -2.4523 7 7 3.1010 4.4384 -3.4495 8 6 2.9232 3.9546 0.0006 9 6 2.6888 3.2756 1.1983 10 7 2.9096 3.8999 2.4153 11 6 2.7600 3.1464 3.6627 12 6 1.2998 3.0589 4.0246 13 1 0.5533 3.4690 3.3606 14 6 0.9167 2.4550 5.2035 15 7 1.8257 1.9559 6.0123 16 14 -0.8934 2.3459 5.6518 17 1 -1.4622 1.0853 5.1108 18 1 -1.0391 2.3605 7.1295 19 1 -1.6179 3.5049 5.0715 20 6 3.2927 5.3134 2.4547 21 6 2.0402 6.1846 2.3403 22 6 1.2183 6.0673 3.6255 23 6 2.0299 6.6140 4.8016 24 6 2.4510 7.6432 2.1290 25 6 1.2020 8.4972 1.9022 26 7 2.2453 2.0233 1.1530 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.2792 4.9743 0.0014 33 1 3.1626 2.1421 3.5311 34 1 3.3023 3.6536 4.4607 35 1 1.5562 1.5315 6.8418 36 1 3.9639 5.5312 1.6238 37 1 3.7989 5.5265 3.3961 38 1 1.4406 5.8497 1.4938 39 1 0.2975 6.6412 3.5215 40 1 0.9754 5.0204 3.8072 41 1 2.1965 7.6822 4.6627 42 1 1.4817 6.4494 5.7291 43 1 2.9898 6.1001 4.8508 44 1 2.9817 8.0025 3.0106 45 1 3.1029 7.7146 1.2584 46 1 0.5947 8.5003 2.8074 47 1 1.4985 9.5177 1.6600 48 1 0.6226 8.0818 1.0776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596172149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:43 Heat of formation + Delta-G solvation = 68.666248 kcal Electronic energy + Delta-G solvation = -27555.059185 eV Core-core repulsion = 24031.128470 eV Total energy + Delta-G solvation = -3523.930715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75940 -38.30779 -36.69972 -35.56181 -33.87682 -32.99914 -32.17799 -30.78832 -30.11598 -28.77548 -26.78317 -25.02263 -24.76342 -23.63274 -23.10172 -22.43750 -20.53470 -18.95604 -18.39629 -17.33195 -16.72953 -15.89926 -15.46422 -15.05543 -14.86201 -14.80360 -14.51746 -14.16938 -13.82483 -13.64149 -13.45246 -13.20896 -13.07138 -12.77514 -12.72855 -12.58979 -12.31288 -12.08309 -11.73446 -11.59430 -11.50511 -11.36478 -11.34097 -11.10528 -10.89416 -10.79330 -10.75761 -10.56545 -10.39796 -10.12259 -10.09132 -9.99536 -9.84635 -9.32452 -9.20430 -8.76799 -8.50490 -7.29392 -6.13677 -4.15109 0.85359 1.61994 2.51686 3.11299 3.24210 3.30918 3.31773 3.37540 3.66541 4.27281 4.34431 4.47553 4.89516 5.07199 5.09343 5.14196 5.18669 5.24098 5.39424 5.42425 5.49811 5.59411 5.64712 5.69854 5.74924 5.83824 5.85656 5.91816 5.97095 6.04683 6.09220 6.10930 6.17238 6.30630 6.31869 6.42623 6.44839 6.54040 6.57639 6.72779 6.82206 6.93005 7.23550 7.29361 7.37253 7.42422 7.71049 7.91047 7.96975 8.12783 8.71278 8.84264 9.45297 10.92900 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.006399 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.268903 B = 4374.825366 C = 6668.406907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C 0.368 3.632 4 N -0.552 5.552 5 C 0.258 3.742 6 C 0.281 3.719 7 N -0.400 5.400 8 C -0.260 4.260 9 C 0.456 3.544 10 N -0.563 5.563 11 C 0.254 3.746 12 C -0.509 4.509 13 H 0.064 0.936 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.122 3.878 21 C -0.100 4.100 22 C -0.157 4.157 23 C -0.140 4.140 24 C -0.121 4.121 25 C -0.149 4.149 26 N -0.527 5.527 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.143 0.857 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.131 0.869 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 5.019 -6.313 8.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C 0.097 3.903 4 N -0.275 5.275 5 C 0.114 3.886 6 C -0.036 4.036 7 N -0.078 5.078 8 C -0.294 4.294 9 C 0.210 3.790 10 N -0.269 5.269 11 C 0.135 3.865 12 C -0.547 4.547 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.002 4.002 21 C -0.120 4.120 22 C -0.194 4.194 23 C -0.197 4.197 24 C -0.159 4.159 25 C -0.206 4.206 26 N -0.251 5.251 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.161 0.839 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.148 0.852 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.444 4.906 -7.385 8.983 hybrid contribution -0.839 0.739 0.764 1.354 sum 0.605 5.645 -6.621 8.722 Atomic orbital electron populations 1.21673 0.93785 1.02061 1.02611 1.20303 0.96687 0.88129 1.03875 1.22804 0.89213 0.96373 0.81877 1.68083 1.19825 1.08498 1.31104 1.16111 0.95945 0.90267 0.86271 1.25027 0.93784 0.92920 0.91914 1.81192 1.07624 1.09145 1.09792 1.22003 1.12537 1.03197 0.91659 1.18392 0.86435 0.87998 0.86219 1.47303 1.66024 1.09346 1.04214 1.19427 0.97466 0.91714 0.77909 1.21194 0.91879 1.37212 1.04461 0.91823 1.24840 0.97250 0.95210 0.96253 1.69905 1.32894 1.38296 1.11806 0.86653 0.85559 0.78715 0.77513 1.20495 1.21288 1.19896 1.21743 0.96107 0.79780 1.02570 1.21595 0.97067 0.93696 0.99635 1.22260 0.96850 1.07522 0.92740 1.21716 1.00644 0.98801 0.98576 1.21588 0.97812 0.95178 1.01277 1.21754 0.98267 0.98854 1.01757 1.68020 1.18093 1.09620 1.29332 0.91670 0.92695 0.91921 0.89664 0.88844 0.83917 0.94208 0.94411 0.92693 0.91933 0.89290 0.91607 0.93748 0.85155 0.94335 0.93318 0.92733 0.91498 0.92729 0.92422 0.93410 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.90 37.16 0.37 -1.52 16 2 C -0.05 -0.71 6.36 -27.88 -0.18 -0.88 16 3 C 0.37 6.24 6.89 -157.35 -1.08 5.16 16 4 N -0.55 -9.16 10.27 -8.79 -0.09 -9.25 16 5 C 0.26 4.03 6.61 -84.85 -0.56 3.47 16 6 C 0.28 4.23 15.59 -22.47 -0.35 3.88 16 7 N -0.40 -6.32 18.54 41.84 0.78 -5.54 16 8 C -0.26 -3.99 8.72 -38.66 -0.34 -4.32 16 9 C 0.46 8.20 7.20 -154.81 -1.11 7.09 16 10 N -0.56 -10.16 2.45 -175.04 -0.43 -10.59 16 11 C 0.25 5.58 4.91 -5.19 -0.03 5.55 16 12 C -0.51 -12.16 6.67 -34.44 -0.23 -12.39 16 13 H 0.06 1.58 6.66 -52.49 -0.35 1.23 16 14 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -23.68 13.29 55.43 0.74 -22.95 16 16 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.12 1.77 4.47 -4.04 -0.02 1.75 16 21 C -0.10 -1.41 2.27 -90.62 -0.21 -1.62 16 22 C -0.16 -2.57 5.23 -26.73 -0.14 -2.71 16 23 C -0.14 -2.13 9.17 37.15 0.34 -1.79 16 24 C -0.12 -1.39 5.09 -26.73 -0.14 -1.53 16 25 C -0.15 -1.66 9.52 37.16 0.35 -1.31 16 26 N -0.53 -10.13 9.30 -10.00 -0.09 -10.23 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.14 1.85 6.33 -52.48 -0.33 1.51 16 33 H 0.04 0.99 7.81 -51.93 -0.41 0.58 16 34 H 0.04 0.87 7.73 -51.93 -0.40 0.47 16 35 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.06 0.77 6.42 -51.93 -0.33 0.44 16 37 H 0.09 1.28 5.59 -51.93 -0.29 0.99 16 38 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 39 H 0.04 0.70 6.84 -51.93 -0.35 0.35 16 40 H 0.13 2.62 3.10 -51.93 -0.16 2.46 16 41 H 0.04 0.50 6.56 -51.93 -0.34 0.16 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.85 6.10 -51.93 -0.32 0.53 16 44 H 0.07 0.75 6.23 -51.93 -0.32 0.42 16 45 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 46 H 0.06 0.67 6.89 -51.93 -0.36 0.31 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -26.25 384.37 -9.05 -35.30 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.31 Total: 2.00 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.42 Total: 0.42 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.90 Total: -58.55 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -26.25 -9.05 -35.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596172149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.969 kcal (2) G-P(sol) polarization free energy of solvation -26.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds