Wall clock time and date at job start Tue Mar 31 2020 11:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.46948 * 2 1 4 4 N 1.31577 * 118.99305 * 269.97617 * 3 2 1 5 5 C 1.33428 * 120.89522 * 180.02562 * 4 3 2 6 6 C 1.43206 * 120.51922 * 179.97438 * 5 4 3 7 7 N 5.83664 * 105.61373 * 322.14580 * 2 1 3 8 8 C 1.39294 * 118.95723 * 359.73247 * 5 4 3 9 9 C 1.39659 * 118.18647 * 0.52635 * 8 5 4 10 10 N 1.38549 * 120.49666 * 179.74134 * 9 8 5 11 11 C 1.46501 * 119.99639 * 184.72648 * 10 9 8 12 12 C 1.50700 * 109.46855 * 279.60920 * 11 10 9 13 13 H 1.08002 * 120.00334 * 3.50946 * 12 11 10 14 14 C 1.37883 * 119.99945 * 183.50007 * 12 11 10 15 15 N 1.31513 * 119.99813 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00061 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47085 * 90.00193 * 16 14 12 18 18 H 1.48497 * 109.46955 * 209.99967 * 16 14 12 19 19 H 1.48496 * 109.47315 * 330.00145 * 16 14 12 20 20 C 1.46500 * 120.00206 * 4.72606 * 10 9 8 21 21 C 1.52997 * 109.47163 * 82.52294 * 20 10 9 22 22 C 1.53006 * 109.47041 * 70.07421 * 21 20 10 23 23 C 1.52995 * 109.46919 * 63.30281 * 22 21 20 24 24 C 1.53004 * 109.47129 * 190.07324 * 21 20 10 25 25 C 1.52998 * 109.47178 * 175.47897 * 24 21 20 26 26 N 1.31827 * 118.99603 * 89.99707 * 3 2 1 27 27 H 1.09001 * 109.47016 * 300.00415 * 1 2 3 28 28 H 1.08998 * 109.46954 * 60.00030 * 1 2 3 29 29 H 1.08995 * 109.46609 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47367 * 240.00112 * 2 1 3 31 31 H 1.09002 * 109.46852 * 119.99480 * 2 1 3 32 32 H 1.08003 * 120.90560 * 180.27256 * 8 5 4 33 33 H 1.08993 * 109.47286 * 39.61107 * 11 10 9 34 34 H 1.09000 * 109.46710 * 159.61756 * 11 10 9 35 35 H 0.96994 * 119.99850 * 179.97438 * 15 14 12 36 36 H 1.09007 * 109.46807 * 322.52479 * 20 10 9 37 37 H 1.08994 * 109.47302 * 202.52816 * 20 10 9 38 38 H 1.09001 * 109.47628 * 310.07422 * 21 20 10 39 39 H 1.08998 * 109.46899 * 183.30115 * 22 21 20 40 40 H 1.08993 * 109.46966 * 303.30540 * 22 21 20 41 41 H 1.09000 * 109.47059 * 65.02226 * 23 22 21 42 42 H 1.08994 * 109.47252 * 185.01860 * 23 22 21 43 43 H 1.08995 * 109.47610 * 305.02512 * 23 22 21 44 44 H 1.08992 * 109.47178 * 295.47907 * 24 21 20 45 45 H 1.08997 * 109.47084 * 55.48228 * 24 21 20 46 46 H 1.09001 * 109.47049 * 65.21504 * 25 24 21 47 47 H 1.08997 * 109.47615 * 185.22363 * 25 24 21 48 48 H 1.09004 * 109.47389 * 305.22116 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2454 2.0220 -1.1509 5 6 2.6904 3.2791 -1.1952 6 6 2.9200 3.9254 -2.4523 7 7 3.1010 4.4384 -3.4495 8 6 2.9232 3.9546 0.0006 9 6 2.6888 3.2756 1.1983 10 7 2.9096 3.8999 2.4153 11 6 2.7600 3.1464 3.6627 12 6 1.2998 3.0589 4.0246 13 1 0.5533 3.4690 3.3606 14 6 0.9167 2.4550 5.2035 15 7 1.8257 1.9559 6.0123 16 14 -0.8934 2.3459 5.6518 17 1 -1.4622 1.0853 5.1108 18 1 -1.0391 2.3605 7.1295 19 1 -1.6179 3.5049 5.0715 20 6 3.2927 5.3134 2.4547 21 6 2.0402 6.1846 2.3403 22 6 1.2183 6.0673 3.6255 23 6 2.0299 6.6140 4.8016 24 6 2.4510 7.6432 2.1290 25 6 1.2020 8.4972 1.9022 26 7 2.2453 2.0233 1.1530 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.2792 4.9743 0.0014 33 1 3.1626 2.1421 3.5311 34 1 3.3023 3.6536 4.4607 35 1 1.5562 1.5315 6.8418 36 1 3.9639 5.5312 1.6238 37 1 3.7989 5.5265 3.3961 38 1 1.4406 5.8497 1.4938 39 1 0.2975 6.6412 3.5215 40 1 0.9754 5.0204 3.8072 41 1 2.1965 7.6822 4.6627 42 1 1.4817 6.4494 5.7291 43 1 2.9898 6.1001 4.8508 44 1 2.9817 8.0025 3.0106 45 1 3.1029 7.7146 1.2584 46 1 0.5947 8.5003 2.8074 47 1 1.4985 9.5177 1.6600 48 1 0.6226 8.0818 1.0776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596172149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:43 Heat of formation + Delta-G solvation = 58.059764 kcal Electronic energy + Delta-G solvation = -27555.519117 eV Core-core repulsion = 24031.128470 eV Total energy + Delta-G solvation = -3524.390647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.08305 -39.57264 -37.94184 -36.82784 -35.18282 -34.72672 -33.53602 -31.93466 -31.40971 -30.19699 -28.25509 -26.46114 -25.96697 -24.92541 -24.35039 -23.83266 -21.79418 -20.17377 -19.63114 -18.83619 -18.47704 -17.20614 -16.65490 -16.57121 -16.37197 -16.00911 -15.78402 -15.39133 -15.17591 -14.82097 -14.73881 -14.42922 -14.33857 -14.24247 -14.02353 -13.77723 -13.58660 -13.37926 -13.18433 -13.00534 -12.70376 -12.68577 -12.62242 -12.51914 -12.38949 -12.23761 -11.92843 -11.87634 -11.79332 -11.49862 -11.46726 -11.26004 -11.14965 -10.76913 -10.58988 -10.45583 -10.13694 -8.75325 -8.05636 -6.12285 -0.41570 0.28731 1.29066 1.40588 1.44358 1.50219 1.86338 2.01343 2.38213 2.47472 2.97763 3.20548 3.24225 3.62506 3.90829 3.96596 4.00225 4.16322 4.21645 4.35209 4.42013 4.48567 4.49726 4.52364 4.65107 4.70500 4.73163 4.80594 4.89340 4.99027 5.05948 5.07480 5.11303 5.17478 5.19027 5.20610 5.28420 5.38589 5.42339 5.46220 5.48332 5.51232 5.71278 5.77336 5.89636 6.00552 6.12207 6.20805 6.36853 6.58121 6.90735 7.39495 7.50499 8.97774 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.008772 B = 0.006399 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.268903 B = 4374.825366 C = 6668.406907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C 0.361 3.639 4 N -0.555 5.555 5 C 0.258 3.742 6 C 0.295 3.705 7 N -0.407 5.407 8 C -0.244 4.244 9 C 0.441 3.559 10 N -0.569 5.569 11 C 0.276 3.724 12 C -0.490 4.490 13 H 0.053 0.947 14 C 0.023 3.977 15 N -0.923 5.923 16 Si 0.935 3.065 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.118 3.882 21 C -0.091 4.091 22 C -0.157 4.157 23 C -0.134 4.134 24 C -0.114 4.114 25 C -0.149 4.149 26 N -0.565 5.565 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.172 0.828 33 H 0.007 0.993 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 6.543 -8.043 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C 0.091 3.909 4 N -0.277 5.277 5 C 0.114 3.886 6 C -0.022 4.022 7 N -0.084 5.084 8 C -0.276 4.276 9 C 0.195 3.805 10 N -0.276 5.276 11 C 0.155 3.845 12 C -0.529 4.529 13 H 0.071 0.929 14 C -0.176 4.176 15 N -0.564 5.564 16 Si 0.762 3.238 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.004 4.004 21 C -0.111 4.111 22 C -0.193 4.193 23 C -0.191 4.191 24 C -0.152 4.152 25 C -0.206 4.206 26 N -0.289 5.289 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.189 0.811 33 H 0.025 0.975 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.639 6.448 -9.155 11.318 hybrid contribution -0.901 0.275 1.217 1.539 sum 0.738 6.723 -7.939 10.429 Atomic orbital electron populations 1.21619 0.93166 1.03347 1.01263 1.20429 0.97098 0.86747 1.04710 1.23274 0.88899 0.97338 0.81398 1.68128 1.19796 1.09007 1.30801 1.16187 0.95683 0.90084 0.86628 1.24718 0.93456 0.92562 0.91483 1.81222 1.07883 1.09434 1.09879 1.22110 1.11243 1.04037 0.90236 1.18651 0.86852 0.88117 0.86888 1.47144 1.66914 1.10504 1.03036 1.18839 0.95828 0.90443 0.79393 1.21289 0.92662 1.35359 1.03549 0.92853 1.25406 0.99958 0.95590 0.96672 1.69995 1.34197 1.39936 1.12294 0.85904 0.82337 0.78429 0.77122 1.20712 1.21219 1.19591 1.21980 0.96787 0.77722 1.03945 1.21499 0.96254 0.95639 0.97725 1.22112 0.97743 1.04901 0.94585 1.21657 0.99751 1.00409 0.97293 1.21554 0.98306 0.92809 1.02534 1.21750 0.97915 0.99786 1.01162 1.68007 1.19313 1.10787 1.30829 0.94452 0.92437 0.89359 0.87336 0.89408 0.81104 0.97520 0.95685 0.92942 0.88848 0.89261 0.92765 0.93620 0.89025 0.91588 0.94979 0.93342 0.90753 0.90724 0.93325 0.91649 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.90 71.98 0.71 -2.76 16 2 C -0.05 -1.38 6.36 29.85 0.19 -1.19 16 3 C 0.36 12.09 6.89 138.81 0.96 13.04 16 4 N -0.55 -17.64 10.27 -181.72 -1.87 -19.51 16 5 C 0.26 7.55 6.61 40.40 0.27 7.82 16 6 C 0.30 8.17 15.59 88.33 1.38 9.54 16 7 N -0.41 -11.85 18.54 19.00 0.35 -11.50 16 8 C -0.24 -6.96 8.72 22.87 0.20 -6.76 16 9 C 0.44 15.64 7.20 133.19 0.96 16.60 16 10 N -0.57 -20.48 2.45 -707.71 -1.73 -22.22 16 11 C 0.28 12.53 4.91 85.63 0.42 12.95 16 12 C -0.49 -24.11 6.67 25.60 0.17 -23.94 16 13 H 0.05 2.72 6.66 -2.91 -0.02 2.70 16 14 C 0.02 1.18 5.46 84.66 0.46 1.64 16 15 N -0.92 -50.69 13.29 21.45 0.28 -50.41 16 16 Si 0.93 42.06 29.54 68.60 2.03 44.09 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 C 0.12 3.22 4.47 86.38 0.39 3.61 16 21 C -0.09 -2.42 2.27 -10.79 -0.02 -2.44 16 22 C -0.16 -5.04 5.23 30.59 0.16 -4.88 16 23 C -0.13 -3.97 9.17 71.98 0.66 -3.31 16 24 C -0.11 -2.25 5.09 30.60 0.16 -2.09 16 25 C -0.15 -2.90 9.52 71.98 0.69 -2.21 16 26 N -0.57 -21.94 9.30 -185.54 -1.72 -23.67 16 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.17 3.81 6.33 -2.91 -0.02 3.79 16 33 H 0.01 0.35 7.81 -2.39 -0.02 0.33 16 34 H 0.03 1.20 7.73 -2.39 -0.02 1.18 16 35 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.09 1.98 6.42 -2.38 -0.02 1.97 16 37 H 0.09 2.45 5.59 -2.39 -0.01 2.44 16 38 H 0.05 1.57 7.79 -2.39 -0.02 1.55 16 39 H 0.05 1.42 6.84 -2.39 -0.02 1.41 16 40 H 0.09 3.74 3.10 -2.39 -0.01 3.74 16 41 H 0.07 1.57 6.56 -2.39 -0.02 1.55 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 43 H 0.05 1.48 6.10 -2.39 -0.01 1.46 16 44 H 0.07 1.38 6.23 -2.39 -0.01 1.37 16 45 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 46 H 0.05 1.03 6.89 -2.39 -0.02 1.01 16 47 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -57.99 384.37 6.05 -51.95 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.97 Total: 15.65 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 7.74 Total: 15.60 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -4.69 Total: -127.29 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -57.99 6.05 -51.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596172149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.005 kcal (2) G-P(sol) polarization free energy of solvation -57.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds