Wall clock time and date at job start Tue Mar 31 2020 11:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00174 * 2 1 4 4 H 1.48494 * 109.47574 * 270.00280 * 3 2 1 5 5 H 1.48507 * 109.47061 * 29.99911 * 3 2 1 6 6 H 1.48502 * 109.47195 * 149.99792 * 3 2 1 7 7 C 1.37880 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00166 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.53262 * 60.10298 * 9 7 2 11 11 C 1.53118 * 109.50641 * 300.00639 * 9 7 2 12 12 C 1.53113 * 109.16270 * 182.40509 * 11 9 7 13 13 C 1.53039 * 109.28101 * 57.65036 * 12 11 9 14 14 N 1.46846 * 109.52097 * 300.82237 * 13 12 11 15 15 C 1.38530 * 110.99669 * 185.83432 * 14 13 12 16 16 C 1.39692 * 120.48598 * 56.04878 * 15 14 13 17 17 C 1.38083 * 118.48990 * 180.02562 * 16 15 14 18 18 N 1.32509 * 119.29450 * 0.02562 * 17 16 15 19 19 C 1.32474 * 120.93465 * 359.97438 * 18 17 16 20 20 N 1.38397 * 119.17810 * 179.72294 * 19 18 17 21 21 C 1.46844 * 110.99638 * 124.21150 * 20 19 18 22 22 C 1.53046 * 109.52034 * 174.16095 * 21 20 19 23 23 C 1.53111 * 109.27728 * 59.17841 * 22 21 20 24 24 C 1.53127 * 109.16333 * 302.34526 * 23 22 21 25 25 C 1.46846 * 110.99779 * 0.02562 * 20 19 18 26 26 N 1.32474 * 121.64293 * 0.02562 * 19 18 17 27 27 C 1.46851 * 111.19683 * 61.74378 * 14 13 12 28 28 H 0.97001 * 119.99736 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.52418 * 62.49489 * 11 9 7 30 30 H 1.08997 * 109.52336 * 302.30746 * 11 9 7 31 31 H 1.09002 * 109.50176 * 297.71253 * 12 11 9 32 32 H 1.09001 * 109.50590 * 177.59400 * 12 11 9 33 33 H 1.08996 * 109.46095 * 180.80382 * 13 12 11 34 34 H 1.08996 * 109.44759 * 60.83306 * 13 12 11 35 35 H 1.08003 * 120.74772 * 0.02562 * 16 15 14 36 36 H 1.08002 * 120.34800 * 180.02562 * 17 16 15 37 37 H 1.09000 * 109.46405 * 294.17082 * 21 20 19 38 38 H 1.09001 * 109.46405 * 54.14626 * 21 20 19 39 39 H 1.09000 * 109.50171 * 299.23773 * 22 21 20 40 40 H 1.09003 * 109.53484 * 179.13734 * 22 21 20 41 41 H 1.09002 * 109.52496 * 182.43967 * 23 22 21 42 42 H 1.09004 * 109.52816 * 62.25052 * 23 22 21 43 43 H 1.08996 * 109.50048 * 297.71630 * 24 23 22 44 44 H 1.08994 * 109.53532 * 177.61701 * 24 23 22 45 45 H 1.08999 * 109.45933 * 305.85001 * 25 20 19 46 46 H 1.08994 * 109.46598 * 65.83840 * 25 20 19 47 47 H 1.08998 * 109.46080 * 58.26870 * 27 14 13 48 48 H 1.08996 * 109.45761 * 178.23892 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6250 -2.5586 -0.8909 11 6 0.3708 -2.5813 1.2496 12 6 -0.3449 -3.9347 1.2724 13 6 0.6952 -5.0569 1.2399 14 7 1.5110 -4.9348 0.0250 15 6 2.3762 -6.0092 -0.1020 16 6 1.8854 -7.3170 -0.1113 17 6 2.7847 -8.3571 -0.2395 18 7 4.0773 -8.0868 -0.3487 19 6 4.5150 -6.8365 -0.3368 20 7 5.8734 -6.5961 -0.4474 21 6 6.1591 -5.7006 -1.5755 22 6 7.6468 -5.3415 -1.5794 23 6 8.4759 -6.6232 -1.6984 24 6 8.1240 -7.5589 -0.5384 25 6 6.6224 -7.8537 -0.5654 26 7 3.6854 -5.8109 -0.2157 27 6 2.2448 -3.6629 0.0039 28 1 -0.4850 0.8401 0.0004 29 1 -0.3671 -1.7794 1.2290 30 1 0.9921 -2.4829 2.1397 31 1 -0.9960 -4.0167 0.4021 32 1 -0.9401 -4.0165 2.1819 33 1 0.1884 -6.0219 1.2415 34 1 1.3371 -4.9823 2.1175 35 1 0.8267 -7.5102 -0.0203 36 1 2.4380 -9.3799 -0.2507 37 1 5.9038 -6.2005 -2.5099 38 1 5.5663 -4.7912 -1.4765 39 1 7.8999 -4.8292 -0.6512 40 1 7.8621 -4.6890 -2.4256 41 1 9.5367 -6.3760 -1.6579 42 1 8.2516 -7.1158 -2.6445 43 1 8.3846 -7.0815 0.4061 44 1 8.6797 -8.4910 -0.6406 45 1 6.3662 -8.5084 0.2675 46 1 6.3651 -8.3430 -1.5047 47 1 2.8795 -3.5952 0.8874 48 1 2.8635 -3.6156 -0.8922 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596328107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:24 Heat of formation + Delta-G solvation = 62.042301 kcal Electronic energy + Delta-G solvation = -27183.656758 eV Core-core repulsion = 23659.438807 eV Total energy + Delta-G solvation = -3524.217951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.19438 -39.21666 -37.93976 -34.53668 -33.84425 -32.82633 -31.34549 -30.91519 -30.24242 -29.43141 -25.43139 -24.87625 -24.73762 -23.22225 -22.64888 -21.72248 -21.14412 -19.85005 -18.84028 -17.87028 -17.17675 -16.41523 -15.87103 -15.36688 -15.04144 -14.78522 -14.63843 -14.47621 -14.26233 -13.92820 -13.72856 -13.53743 -13.36907 -13.18901 -12.88627 -12.55242 -12.42163 -12.28855 -11.89338 -11.38059 -11.03820 -10.98745 -10.91167 -10.78317 -10.70227 -10.62303 -10.59887 -10.44918 -10.21080 -10.15648 -9.91298 -9.53727 -9.21262 -8.97469 -8.77596 -8.46271 -8.31458 -7.92098 -6.00123 -4.05707 1.20407 1.38917 3.20730 3.31045 3.37687 3.41448 3.71520 4.13979 4.35258 4.46628 4.62299 4.74347 4.75654 4.95126 5.04680 5.12836 5.23329 5.30382 5.35370 5.43278 5.47048 5.49724 5.56069 5.60624 5.64415 5.74268 5.81519 5.83023 5.87502 5.97294 5.98912 6.06779 6.19571 6.27751 6.37467 6.44854 6.52312 6.65606 6.69324 6.81357 6.89560 7.05889 7.23651 7.32394 7.55009 7.62583 7.73534 7.99818 8.10537 8.40371 8.47210 8.97667 9.58816 11.06284 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.003976 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.407662 B = 7039.856368 C = 8991.436442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.115 4.115 12 C -0.119 4.119 13 C 0.070 3.930 14 N -0.471 5.471 15 C 0.391 3.609 16 C -0.281 4.281 17 C 0.178 3.822 18 N -0.584 5.584 19 C 0.513 3.487 20 N -0.460 5.460 21 C 0.067 3.933 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.121 4.121 25 C 0.073 3.927 26 N -0.561 5.561 27 C 0.078 3.922 28 H 0.260 0.740 29 H 0.095 0.905 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.040 0.960 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.041 0.959 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.028 -16.565 -0.788 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.153 4.153 12 C -0.157 4.157 13 C -0.055 4.055 14 N -0.186 5.186 15 C 0.148 3.852 16 C -0.308 4.308 17 C 0.015 3.985 18 N -0.308 5.308 19 C 0.156 3.844 20 N -0.180 5.180 21 C -0.059 4.059 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.054 4.054 26 N -0.286 5.286 27 C -0.047 4.047 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.161 0.839 36 H 0.180 0.820 37 H 0.059 0.941 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.674 -15.933 -0.831 18.658 hybrid contribution -0.329 0.406 0.028 0.523 sum 9.345 -15.527 -0.804 18.140 Atomic orbital electron populations 1.69882 1.05854 1.26400 1.50713 1.24920 0.94836 0.98988 0.95033 0.86602 0.79900 0.83447 0.78109 1.20692 1.21274 1.19910 1.21089 0.92971 0.90306 1.50689 0.92580 1.18765 0.92590 0.90580 0.94849 0.94810 1.21721 1.00234 0.94589 0.98717 1.21747 0.96868 0.96080 1.01019 1.22228 0.95277 1.00237 0.87792 1.58912 1.21000 1.02873 1.35823 1.20203 0.87077 0.91100 0.86836 1.22182 1.02491 0.92835 1.13324 1.22683 0.87470 0.99382 0.88977 1.68312 1.17627 1.21872 1.22951 1.20761 0.90065 0.84271 0.89349 1.58305 1.01297 1.16141 1.42226 1.22188 0.97827 0.96882 0.89017 1.21634 0.93242 0.97600 1.03096 1.21630 0.99853 0.96182 0.98465 1.21683 0.94831 0.99782 0.99557 1.21976 0.92243 0.88774 1.02391 1.68033 1.02982 1.35095 1.22463 1.22334 0.95972 0.85191 1.01195 0.93028 0.88633 0.94736 0.91650 0.92482 0.91100 0.94030 0.83934 0.81983 0.94123 0.88404 0.90605 0.90775 0.91583 0.92157 0.91003 0.91059 0.89557 0.93295 0.94108 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 11.35 55.43 0.63 -24.35 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.95 8.56 -34.44 -0.29 -14.24 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.05 1.26 2.26 -91.69 -0.21 1.05 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 12 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 13 C 0.07 1.18 5.25 -3.83 -0.02 1.16 16 14 N -0.47 -8.93 4.68 -173.07 -0.81 -9.74 16 15 C 0.39 6.92 6.40 -154.84 -0.99 5.93 16 16 C -0.28 -4.00 9.26 -39.10 -0.36 -4.37 16 17 C 0.18 2.31 11.28 -17.32 -0.20 2.11 16 18 N -0.58 -8.75 8.67 -14.02 -0.12 -8.88 16 19 C 0.51 8.50 7.17 -322.87 -2.31 6.19 16 20 N -0.46 -6.68 4.72 -175.44 -0.83 -7.51 16 21 C 0.07 0.89 5.33 -3.83 -0.02 0.87 16 22 C -0.12 -1.24 6.09 -26.65 -0.16 -1.40 16 23 C -0.12 -1.09 6.00 -26.61 -0.16 -1.25 16 24 C -0.12 -1.11 6.10 -26.64 -0.16 -1.28 16 25 C 0.07 0.86 4.63 -3.83 -0.02 0.84 16 26 N -0.56 -10.36 8.07 -13.16 -0.11 -10.47 16 27 C 0.08 1.72 3.89 -3.83 -0.01 1.70 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.10 2.44 6.15 -51.93 -0.32 2.12 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.99 6.75 -51.93 -0.35 0.64 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.14 1.70 7.24 -52.48 -0.38 1.32 16 36 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 1.52 7.55 -51.93 -0.39 1.13 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 1.05 7.68 -51.93 -0.40 0.66 16 46 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 47 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 48 H 0.07 1.65 7.73 -51.93 -0.40 1.25 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -29.51 368.12 -14.15 -43.65 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.12 Total: 1.71 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -5.31 Total: -6.12 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -1.24 Total: -60.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.51 -14.15 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596328107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.697 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds